BAC Information

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BAC

Clone NameB6Ng01-003D22
Chromosome18 (Build37)
Map Location 79,745,977 - 79,870,441
singlet/doubletdoublet
Overlap geneLOC100039250
Upstream geneSlc14a2, Setbp1, LOC100039242
Downstream geneLOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003D22.bB6Ng01-003D22.g
ACCDH841018DH841019
length980221
definitionDH841018|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D22, 5' end.DH841019|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,745,977 - 79,746,521)(79,870,245 - 79,870,441)
sequence
gaattctttcttagtttgagatactcacttattattctctctctcttttt
aattctttgacaatgtaatacatgtatataattaattcatttctattcct
tgttattctctcttattccttgcccattgaaactcttcttcttcctagaa
agcccctgtactaatttcatgccactttgggtatacatatggtttgttga
attaattatgacagcttgctagggcatgcatagtgggttatttactggaa
cttgactagtttaacaatagcaactccactgagagaatgataccctctgc
ttcagcagccattaaggaccaatatttcctcatgagctccttatccatgg
atgatgaaatggtgatgtgtccaatattttgcaggtagttcttcatcatc
ttctggctcttacagttttttgtttgtttatttgtttgttttgttttgtt
ttgccacctattacacaatattccttctttggagggagtggtatagaata
gatacactgtttagagataaggacttcacagttgttattcttagcacttc
aacaagctttgggtctctgcactaaattctaaataggccacccacttaga
aaacaagcttccctgattattgcttggagtagcacgaatctatgggtata
aacataactccttagaaggcaatttgatactacattcatttagcaaaaga
gtggtatctttgacctcaaggcctatgaaacctcaaaccaagaactcttg
accagttccatttatccaaagtttctccttgtagattggaacataaatac
aaccaggaagctgttagatacccccataataaaaatgcttatagtgcact
actgagtaagtcttgcctaaccaattgttattaaagctcatagcgctcaa
agttgtaggagtctgctgatgacttttctctatcagatttttgtatactc
tttttccagcactgggaagattggccagta
atacgaactgtatttgtcatgacattgatatttgtcttttgtttaatttt
tcctgaagaaaaaaaaaatcaaataaaaatgggttacttcagcagcagaa
gccaaaaagaaaaagcagattccatgaatatatatatatatatatatata
tatgtatatatgtatgtatatatatatatatatatatatatatatatata
tatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_79745977_79746521
seq2: B6Ng01-003D22.b_44_588

seq1  GAATTCTTTCTTAGTTTGAGATACTCACTTATTATTCTCTCTCTCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTAGTTTGAGATACTCACTTATTATTCTCTCTCTCTTTTT  50

seq1  AATTCTTTGACAATGTAATACATGTATATAATTAATTCATTTCTATTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTGACAATGTAATACATGTATATAATTAATTCATTTCTATTCCT  100

seq1  TGTTATTCTCTCTTATTCCTTGCCCATTGAAACTCTTCTTCTTCCTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCTCTCTTATTCCTTGCCCATTGAAACTCTTCTTCTTCCTAGAA  150

seq1  AGCCCCTGTACTAATTTCATGCCACTTTGGGTATACATATGGTTTGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGTACTAATTTCATGCCACTTTGGGTATACATATGGTTTGTTGA  200

seq1  ATTAATTATGACAGCTTGCTAGGGCATGCATAGTGGGTTATTTACTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTATGACAGCTTGCTAGGGCATGCATAGTGGGTTATTTACTGGAA  250

seq1  CTTGACTAGTTTAACAATAGCAACTCCACTGAGAGAATGATACCCTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTAGTTTAACAATAGCAACTCCACTGAGAGAATGATACCCTCTGC  300

seq1  TTCAGCAGCCATTAAGGACCAATATTTCCTCATGAGCTCCTTATCCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGCCATTAAGGACCAATATTTCCTCATGAGCTCCTTATCCATGG  350

seq1  ATGATGAAATGGTGATGTGTCCAATATTTTGCAGGTAGTTCTTCATCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAAATGGTGATGTGTCCAATATTTTGCAGGTAGTTCTTCATCATC  400

seq1  TTCTGGCTCTTACAGTTTTTTGTTTGTTTATTTGTTTGTTTTGTTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTCTTACAGTTTTTTGTTTGTTTATTTGTTTGTTTTGTTTTGTT  450

seq1  TTGCCACCTATTACACAATATTCCTTCTTTGGAGGGAGTGGTATAGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACCTATTACACAATATTCCTTCTTTGGAGGGAGTGGTATAGAATA  500

seq1  GATACACTGTTTAGAGATAAGGACTTCACAGTTGTTATTCTTAGC  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACTGTTTAGAGATAAGGACTTCACAGTTGTTATTCTTAGC  545

seq1: chr18_79870245_79870441
seq2: B6Ng01-003D22.g_68_264 (reverse)

seq1  ATATATATATATATATATATATATACATACATATATACATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATACATACATATATACATATATATATAT  50

seq1  ATATATATATATATTCATGGAATCTGCTTTTTCTTTTTGGCTTCTGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATTCATGGAATCTGCTTTTTCTTTTTGGCTTCTGCTGC  100

seq1  TGAAGTAACCCATTTTTATTTGATTTTTTTTTTCTTCAGGAAAAATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAACCCATTTTTATTTGATTTTTTTTTTCTTCAGGAAAAATTAAA  150

seq1  CAAAAGACAAATATCAATGTCATGACAAATACAGTTCGTATGAATTC  197
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACAAATATCAATGTCATGACAAATACAGTTCGTATGAATTC  197