BAC Information

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BAC

Clone NameB6Ng01-003D24
Chromosome18 (Build37)
Map Location 58,088,676 - 58,228,233
singlet/doubletdoublet
Overlap geneSlc12a2, Fbn2
Upstream geneC330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, 9330166H04Rik
Downstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003D24.bB6Ng01-003D24.g
ACCDH841022DH841023
length1,159836
definitionDH841022|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D24, 5' end.DH841023|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,227,081 - 58,228,233)(58,088,676 - 58,089,504)
sequence
gaattcttttggaaatccttaaagacacatagttagtttgcccttcaaga
caaatctttcaagtgaattgtattttgcattttgtcggttcattgcagcc
ctgtgctaacattcagtttaaaaggtggtttttaaattacggtgatagag
acaaaggtaactggacgacacaatgcgtttttttccagatgtgaacgagt
gtgacctgaatcccaacatctgcatgtttggggaatgtgagaacacgaag
ggctctttcatttgccactgccagctgggctactcggtgaagaaggggac
cacaggatgcacaggtaggatccccatgcccgcctggcttcagcctcagg
gggttcacaggctagcatcattccagcattcaacatcccaggacccagtc
aaccagaaaacacctgccagtgtgaggagtaactggctcttagctatgcc
attcactgtccctgaggtgcccccccccaccccgcctgagccaccctgca
gggaggaagtagtagtgaacccgccctgcttctggttgatcttgcagcat
cattaagtttctcggcttgatggcagcccaagtggaggacccgtgtaaag
taggaaatgaaagcagcggtcctcagccttcctgaagctgcagcccttta
gtacagcgcctcatgtcgtggtgactcccgaccatacatttttttttttg
ttgctacctcacataactgcagatgttttgctactgttacgaattgtaat
gtaaataaatatctgtgttttcaatgtcttatgtgactcctacaaaagag
tcattctgacgcccaaggagtcatgaaccacatgttgatgaaaaacactg
acttaaaccatcccaactttcgtttgacttgttatgttaaacggataaac
atcctagattcaataaggacttttattggcctacttgaaatgggttctaa
tccctctccctgtctacgacgccaacctacacctcccgatacctcgtctt
atcgcctgacggtggtcaatccacgacgatttatcttacagtctgacgtt
ctctgtacctctttagtgtaacaccctctgtaacagactggactagagag
aactctagtggaaggtgcagctacatagtccctggcatgctgccgttaag
gacctatgg
gaattctttaataagagtttcttggattttgccagatagagttgttaaaa
tttgaaaagtacttttcttagtattctaggatttgctcaatacattttta
cattgagaattcacattgtgccattatcatcaatattattagtttaaaaa
acaaacatcagggagaaaatcttgtctttagcagagtggtttgaatatgg
aattgggatgccagttttccttgtaattcactgaagttctctctactgca
attcctgctatgtctacagatttttttcataacttatttgaaaagtcttt
taagaaatgatcagaggtcatacagtaggtgacaaacaagaagcctttaa
atgttaggtgattttgtggactttgtgccctcgtgttatttggcgaggag
aatctccttgtagctacctagttctgtactgtgcacattgtgtatatggt
agctcagaaaaggaagacagtagaaagaaagattaaatcatgggctatca
aagtgtgagagctgtgctgtactgtttcctcaggctcaagagcagtggga
tggactaagcatcctagagaacagagcctcggcagtgtggaaaatggttt
agatacaccgactgcattagttgtagcttcaggttgcttataactgcaat
ctttcacagacattcaagtgcacatgcctacaaacagacacataatgaga
aacaaaacaaaacctaaaatcaaacaaccaaacaaacctgttcctactct
aagaggctgctacgtaagtcagtcaccgcagtttacggtgggtgctcatt
gtgggaagtaggttgggaggtggttttgtaacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58227081_58228233
seq2: B6Ng01-003D24.b_43_1201 (reverse)

seq1  CCATAAGGGTCCTTAAAGTGAGCATGCCAGGGAC-AAGTAGCTCACACCT  49
      |||||  ||||||||| |  |||||||||||||| | ||||||  |||||
seq2  CCATA--GGTCCTTAACGGCAGCATGCCAGGGACTATGTAGCT-GCACCT  47

seq1  --CAATTGACATCTC-CTAGTCCCATCTGTACAAGAGGG-GTGAAACTAA  95
        || | ||  |||| |||||||  |||||   |||||| || | |||||
seq2  TCCACTAGAGTTCTCTCTAGTCCAGTCTGTTACAGAGGGTGTTACACTAA  97

seq1  AGA-GTA-AAAAAAGG--AGACAG-AAGATAAATCGT-GTGGAGTGAACC  139
      ||| ||| | | || |  |||| | |||||||||||| ||||| || |||
seq2  AGAGGTACAGAGAACGTCAGACTGTAAGATAAATCGTCGTGGATTG-ACC  146

seq1  ACCG-CA-GTGAAAAGAGGGAGGTAACGGGGGGTGGAGGGAGAGGGAGGG  187
      |||| || | || ||||  |||||| |||| |||| |||  | | |  | 
seq2  ACCGTCAGGCGATAAGA-CGAGGTATCGGGAGGTGTAGGTTG-GCGTCGT  194

seq1  AGAAAGGGGAGAGGGGATGAGAAACCATTT-AAGTAAGGCAATAAAAGTC  236
      ||| | |||||| ||||| |||| |||||| ||||| | |||||||||||
seq2  AGACA-GGGAGA-GGGATTAGAACCCATTTCAAGTAGGCCAATAAAAGTC  242

seq1  CAAATAGAATCTAGGATGTTTTATCAGTTTAACATTACAAGTCAAATGAA  286
      |  || |||||||||||| |||||| ||||||||| |||||||||| |||
seq2  CTTATTGAATCTAGGATG-TTTATCCGTTTAACATAACAAGTCAAACGAA  291

seq1  AATTTGGATCTTTTAAGCCACTGGTTTTC-TCAACCTGTGGTTCATGACT  335
      | || ||||  |||||| || || ||||| ||||| ||||||||||||||
seq2  AGTTGGGATGGTTTAAGTCAGTGTTTTTCATCAACATGTGGTTCATGACT  341

seq1  CCTTGGGCGTCAGAATGACTCTTTTGTAGGAGTCACCTAAGACACTGGAA  385
      |||||||||||||||||||||||||||||||||||| ||||||| | |||
seq2  CCTTGGGCGTCAGAATGACTCTTTTGTAGGAGTCACATAAGACA-TTGAA  390

seq1  AACACAGATATTTATTTACATTACAATTCGTAACAGTAGCAAAACAT-TG  434
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AACACAGATATTTATTTACATTACAATTCGTAACAGTAGCAAAACATCTG  440

seq1  CAGTTATGTGAGGTAGCAACAAAAAAAAAAATGTATGGTCGGGAGTCACC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATGTGAGGTAGCAACAAAAAAAAAAATGTATGGTCGGGAGTCACC  490

seq1  ACGACATGAGGCGCTGTACTAAAGGGCTGCAGCTTCAGGAAGGCTGAGGA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACATGAGGCGCTGTACTAAAGGGCTGCAGCTTCAGGAAGGCTGAGGA  540

seq1  CCGCTGCTTTCATTTCCTACTTTACACGGGTCCTCCACTTGGGCTGCCAT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGCTTTCATTTCCTACTTTACACGGGTCCTCCACTTGGGCTGCCAT  590

seq1  CAAGCCGAGAAACTTAATGATGCTGCAAGATCAACCAGAAGCAGGGCGGG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCGAGAAACTTAATGATGCTGCAAGATCAACCAGAAGCAGGGCGGG  640

seq1  TTCACTACTACTTCCTCCCTGCAGGGTGGCTCAGGCGGGGTGGGGGGGGG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTACTACTTCCTCCCTGCAGGGTGGCTCAGGCGGGGTGGGGGGGGG  690

seq1  CACCTCAGGGACAGTGAATGGCATAGCTAAGAGCCAGTTACTCCTCACAC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGGGACAGTGAATGGCATAGCTAAGAGCCAGTTACTCCTCACAC  740

seq1  TGGCAGGTGTTTTCTGGTTGACTGGGTCCTGGGATGTTGAATGCTGGAAT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTGTTTTCTGGTTGACTGGGTCCTGGGATGTTGAATGCTGGAAT  790

seq1  GATGCTAGCCTGTGAACCCCCTGAGGCTGAAGCCAGGCGGGCATGGGGAT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAGCCTGTGAACCCCCTGAGGCTGAAGCCAGGCGGGCATGGGGAT  840

seq1  CCTACCTGTGCATCCTGTGGTCCCCTTCTTCACCGAGTAGCCCAGCTGGC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTGTGCATCCTGTGGTCCCCTTCTTCACCGAGTAGCCCAGCTGGC  890

seq1  AGTGGCAAATGAAAGAGCCCTTCGTGTTCTCACATTCCCCAAACATGCAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAAATGAAAGAGCCCTTCGTGTTCTCACATTCCCCAAACATGCAG  940

seq1  ATGTTGGGATTCAGGTCACACTCGTTCACATCTGGAAAAAAACGCATTGT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGGATTCAGGTCACACTCGTTCACATCTGGAAAAAAACGCATTGT  990

seq1  GTCGTCCAGTTACCTTTGTCTCTATCACCGTAATTTAAAAACCACCTTTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCCAGTTACCTTTGTCTCTATCACCGTAATTTAAAAACCACCTTTT  1040

seq1  AAACTGAATGTTAGCACAGGGCTGCAATGAACCGACAAAATGCAAAATAC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAATGTTAGCACAGGGCTGCAATGAACCGACAAAATGCAAAATAC  1090

seq1  AATTCACTTGAAAGATTTGTCTTGAAGGGCAAACTAACTATGTGTCTTTA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTTGAAAGATTTGTCTTGAAGGGCAAACTAACTATGTGTCTTTA  1140

seq1  AGGATTTCCAAAAGAATTC  1153
      |||||||||||||||||||
seq2  AGGATTTCCAAAAGAATTC  1159

seq1: chr18_58088676_58089504
seq2: B6Ng01-003D24.g_64_892

seq1  GAATTCTTTAATAAGAGTTTCTTGGATTTTGCCAGATAGAGTTGTTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATAAGAGTTTCTTGGATTTTGCCAGATAGAGTTGTTAAAA  50

seq1  TTTGAAAAGTACTTTTCTTAGTATTCTAGGATTTGCTCAATACATTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAGTACTTTTCTTAGTATTCTAGGATTTGCTCAATACATTTTTA  100

seq1  CATTGAGAATTCACATTGTGCCATTATCATCAATATTATTAGTTTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGAATTCACATTGTGCCATTATCATCAATATTATTAGTTTAAAAA  150

seq1  ACAAACATCAGGGAGAAAATCTTGTCTTTAGCAGAGTGGTTTGAATATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATCAGGGAGAAAATCTTGTCTTTAGCAGAGTGGTTTGAATATGG  200

seq1  AATTGGGATGCCAGTTTTCCTTGTAATTCACTGAAGTTCTCTCTACTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGATGCCAGTTTTCCTTGTAATTCACTGAAGTTCTCTCTACTGCA  250

seq1  ATTCCTGCTATGTCTACAGATTTTTTTCATAACTTATTTGAAAAGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGCTATGTCTACAGATTTTTTTCATAACTTATTTGAAAAGTCTTT  300

seq1  TAAGAAATGATCAGAGGTCATACAGTAGGTGACAAACAAGAAGCCTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATGATCAGAGGTCATACAGTAGGTGACAAACAAGAAGCCTTTAA  350

seq1  ATGTTAGGTGATTTTGTGGACTTTGTGCCCTCGTGTTATTTGGCGAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGGTGATTTTGTGGACTTTGTGCCCTCGTGTTATTTGGCGAGGAG  400

seq1  AATCTCCTTGTAGCTACCTAGTTCTGTACTGTGCACATTGTGTATATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCTTGTAGCTACCTAGTTCTGTACTGTGCACATTGTGTATATGGT  450

seq1  AGCTCAGAAAAGGAAGACAGTAGAAAGAAAGATTAAATCATGGGCTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGAAAAGGAAGACAGTAGAAAGAAAGATTAAATCATGGGCTATCA  500

seq1  AAGTGTGAGAGCTGTGCTGTACTGTTTCCTCAGGCTCAAGAGCAGTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGAGAGCTGTGCTGTACTGTTTCCTCAGGCTCAAGAGCAGTGGGA  550

seq1  TGGACTAAGCATCCTAGAGAACAGAGCCTCGGCAGTGTGGAAAATGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTAAGCATCCTAGAGAACAGAGCCTCGGCAGTGTGGAAAATGGTTT  600

seq1  AGATACACCGACTGCATTAGTTGTAGCTTCAGGTTGCTTATAACTGCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACACCGACTGCATTAGTTGTAGCTTCAGGTTGCTTATAACTGCAAT  650

seq1  CTTTCACAGACATTCAAGTGCACATGCCTACAAACAGACACATAATGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACAGACATTCAAGTGCACATGCCTACAAACAGACACATAATGAGA  700

seq1  AACAAAACAAAACCTAAAATCAAACAACCAAACAAACCTGTTCCTACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACCTAAAATCAAACAACCAAACAAACCTGTTCCTACTCT  750

seq1  AAGAGGCTGCTACGTAAGTCAGTCACCGCAGTTTACGGTGGGTGCTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTGCTACGTAAGTCAGTCACCGCAGTTTACGGTGGGTGCTCATT  800

seq1  GTGGGAAGTAGGTTGGGAGGTGGTTTTGT  829
      |||||||||||||||||||||||||||||
seq2  GTGGGAAGTAGGTTGGGAGGTGGTTTTGT  829