BAC Information

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BAC

Clone NameB6Ng01-003E24
Chromosome18 (Build37)
Map Location 27,861,127 - 28,001,103
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665977, EG665646
Downstream geneEG271505, EG625997, BC051408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003E24.bB6Ng01-003E24.g
ACCDH841066DH841067
length1,1661,096
definitionDH841066|Mus musculus domesticus DNA, BAC clone: B6Ng01-003E24, 5' end.DH841067|Mus musculus domesticus DNA, BAC clone: B6Ng01-003E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,861,127 - 27,862,318)(28,000,001 - 28,001,103)
sequence
gaattctttacctgctaccatcttagtacattgtgctacttggaaggtga
gccctatatagtatagagcaaacatttatacatgcgagcagtacaaataa
caaatatgcttacatgtatgtatacatgtctaattgccacatgttcactc
gcgctataaatcctgtaaggatgccaaatgctaggcaatatggttcagta
ggtaaagataaccatcactgtgcccgatggatgtcttgagtatgatccct
gagactcacatggaagaaggaaagaagtgactctcacgagttaccatcca
gtttccaggtggtaccttccaccagctgttaatgtgtgtctgtcacatta
actaccaacctccctaaaatgtcagacattgctgtggtgtcgctctgagt
gtagttcctgaggttccaggtatgacttgtattttaattaaattcattaa
tcttttcttgaaagacaatgcaacaggacaggagggattcatcaacctgc
aaagtgaaatgacaccttctgtttcctaaaaacttatccgtgggagtgtt
agtattgagatatttttaataagcttgaagacatatgcatttctcctcat
tgtttttctttccacagtactgttagcactcagtgttccccaagcatcct
ttggacactgctaccaatacgccaggatatcatgcttatttcctgttccg
gattacatgaagcaatgcttattgtgggcatatgaggaacttacagaagt
tccttgctttgcaagtgtcttttctccaaacagcacaggggagctgtttc
ccagattcttttgggatatgtccagatgcctgagttcttagcagaggaat
gtgaatgggggtgcgtgtaagctcttcccagcctggttctaatgtctatt
gcttttctattcactgagaactactgagcaagtctgaacccaaacacata
agagtcagtgatgactttatcaacattctgtccttcagcacatgggaagc
cccagcatggaagacttcaagccagatgcctctgaatactgaccattgag
gagtgcaattttgattgttttcaattattttaacttattataaagcatac
atcaaagatccacctcttgagtgtggtgagataatctattcctactagga
agcgattaggacttgc
gaattctttcattgcttccaaacttggattttgagtgtccacacattttc
ctttttaaatctaagcattctgaagtagtaattagaaccttcatgaatca
cagtggaactgcatgaggctatagcctttacagcattagacatgccagac
actcaaggttgtacctctatttcacaagaatgggacagatattccttatg
ctcccaaacttctctgaaccttctccattttcctttttgttgtgtctggc
cagcagaccacaacctgggttctagcctggaaaggcattttggaatcctg
gaagagaagaggggctaggtagcgagagaaagaaatgtagccaagacagt
tattctgatcaaagcccaaattttactgttgcgacactagttatgaagga
agggggaggggaccctattcccgccgaataatctcaggtccagtagtagg
gtgagcatgtgatggcttcggaacagcaaagcggcaggttccagcagtgg
gcgtggcagaacgaatgaacaggaagctccacccctgagcaagcaggttt
caggctgggggaggggagactacaccttttatccttgtgaggggtaagga
atcctaaaattgttggcgaatatttgtatttcgtttgtaggaacatgaag
acataggaaagtggggcagggaaaagcaagatggttccttaattctagat
tcttctctatagtatccttggcacaactaggatcattagcagatcagtac
ttttatcaaagtaccaaatttctgttattttctttccttctttgtttatc
attcctggggtatctacaacttctcactgaataagaatttattcattctt
tctgagttagatcttttttagacgtattctaaatgtattccaccattaac
tttttctactagaagtctaacaggtaagctgaatcaaaaacactttcact
acatataaatatatgttttatggtataacagataaattgcaaagaaatgc
attgtctcaatttatagtgccactatcttattgctcatctattttatttt
gaagtgatctttgtgctagaaattccaaagttaaataagtcttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27861127_27862318
seq2: B6Ng01-003E24.b_48_1213

seq1  GAATTCTTTACCTGCTACCATCTTAGTACATTGTGCTACTTGGAAGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCTGCTACCATCTTAGTACATTGTGCTACTTGGAAGGTGA  50

seq1  GCCCTATATAGTATAGAGCAAACATTTATACATGCGAGCAGTACAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATATAGTATAGAGCAAACATTTATACATGCGAGCAGTACAAATAA  100

seq1  CAAATATGCTTACATGTATGTATACATGTCTAATTGCCACATGTTCACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGCTTACATGTATGTATACATGTCTAATTGCCACATGTTCACTC  150

seq1  GCGCTATAAATCCTGTAAGGATGCCAAATGCTAGGCAATATGGTTCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTATAAATCCTGTAAGGATGCCAAATGCTAGGCAATATGGTTCAGTA  200

seq1  GGTAAAGATAACCATCACTGTGCCCGATGGATGTCTTGAGTATGATCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGATAACCATCACTGTGCCCGATGGATGTCTTGAGTATGATCCCT  250

seq1  GAGACTCACATGGAAGAAGGAAAGAAGTGACTCTCACGAGTTACCATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCACATGGAAGAAGGAAAGAAGTGACTCTCACGAGTTACCATCCA  300

seq1  GTTTCCAGGTGGTACCTTCCACCAGCTGTTAATGTGTGTCTGTCACATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGGTGGTACCTTCCACCAGCTGTTAATGTGTGTCTGTCACATTA  350

seq1  ACTACCAACCTCCCTAAAATGTCAGACATTGCTGTGGTGTCGCTCTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAACCTCCCTAAAATGTCAGACATTGCTGTGGTGTCGCTCTGAGT  400

seq1  GTAGTTCCTGAGGTTCCAGGTATGACTTGTATTTTAATTAAATTCATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCCTGAGGTTCCAGGTATGACTTGTATTTTAATTAAATTCATTAA  450

seq1  TCTTTTCTTGAAAGACAATGCAACAGGACAGGAGGGATTCATCAACCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTGAAAGACAATGCAACAGGACAGGAGGGATTCATCAACCTGC  500

seq1  AAAGTGAAATGACACCTTCTGTTTCCTAAAAACTTATCCGTGGGAGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAATGACACCTTCTGTTTCCTAAAAACTTATCCGTGGGAGTGTT  550

seq1  AGTATTGAGATATTTTTAATAAGCTTGAAGACATATGCATTTCTCCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGAGATATTTTTAATAAGCTTGAAGACATATGCATTTCTCCTCAT  600

seq1  TGTTTTTCTTTCCACAGTACTGTTAGCACTCAGTGTTCCCCAAGCATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTTTCCACAGTACTGTTAGCACTCAGTGTTCCCCAAGCATCCT  650

seq1  TTGGACACTGCTACCAATACGCCAGGATATCATGCTTATTTCCTGTTCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACTGCTACCAATACGCCAGGATATCATGCTTATTTCCTGTTCCG  700

seq1  GATTACATGAAGCAATGCTTATTGTGGGCATATGAGGAACTTACAGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACATGAAGCAATGCTTATTGTGGGCATATGAGGAACTTACAGAAGT  750

seq1  TCCTTGCTTTGCAAGTGTCTTTTCTCCAAACAGCACAGGGGAGCTGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTTTGCAAGTGTCTTTTCTCCAAACAGCACAGGGGAGCTGTTTC  800

seq1  CCAGATTCTTTTGGGATATGTCCAGATGCCTGAGTTCTTAGCAGAGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCTTTTGGGATATGTCCAGATGCCTGAGTTCTTAGCAGAGGAAT  850

seq1  GTGAATGGGGGTGCGTGTAAGCTCTTCCCAGCCTGGTTCTAATGTCTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGGGGGTGCGTGTAAGCTCTTCCCAGCCTGGTTCTAATGTCTATT  900

seq1  GCTTTTCTATTCACTGAGAACTACTGAGCAAGTCTGAACCCAAACACATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTATTCACTGAGAACTACTGAGCAAGTCTGAACCCAAACACATA  950

seq1  AGAGTCAGTGATGACTTTATCAAACATTCTGTCCCTTCAGCACATGGGGG  1000
      ||||||||||||||||||||| |||||||||| ||||||||||||  |||
seq2  AGAGTCAGTGATGACTTTATC-AACATTCTGT-CCTTCAGCACAT--GGG  996

seq1  AAGCCCCAGCATGGAAGAACTTCAAGCCAAGATGCCTTCCTTGAATACTG  1050
      ||||||||||||||||| |||||||||| ||||||||    |||||||||
seq2  AAGCCCCAGCATGGAAG-ACTTCAAGCC-AGATGCCT---CTGAATACTG  1041

seq1  ACCAATTGA-GAGTGC-ATTTTGATTGTTTTCAATTTATTTTTAAACTTT  1098
      ||| ||||| |||||| ||||||||||||||||| |||||||  ||| ||
seq2  ACC-ATTGAGGAGTGCAATTTTGATTGTTTTCAA-TTATTTT--AAC-TT  1086

seq1  ATTATAAAAGCATTACAAATCAAAAGGATCACACTCTTGAGTGTGTGAAG  1148
      ||||| |||||||   | ||||||  ||||   ||||||||||||   ||
seq2  ATTAT-AAAGCAT---ACATCAAA--GATCCACCTCTTGAGTGTGGTGAG  1130

seq1  ATTAATCTATTCCTTAATTTAGGAAAGCAGATTAGAGAACTTGC  1192
      | ||||||||||||     |||| |||| ||||  || ||||||
seq2  A-TAATCTATTCCT---ACTAGG-AAGC-GATT--AGGACTTGC  1166

seq1: chr18_28000001_28001103
seq2: B6Ng01-003E24.g_64_1159 (reverse)

seq1  TAGAAGACTTATTTTTACTTTTGAATTTCTAAGCCACAAAGAATCACTTC  50
      ||||||||||| ||| ||||| |||||||||   ||||||| ||||||||
seq2  TAGAAGACTTA-TTTAACTTTGGAATTTCTA--GCACAAAG-ATCACTTC  46

seq1  AAAAT-AAATAGATTGAGCAATAAGATAGTGGCACTATAAATTTGAGACA  99
      ||||| ||||||| ||||||||||||||||||||||||||| ||||||||
seq2  AAAATAAAATAGA-TGAGCAATAAGATAGTGGCACTATAAA-TTGAGACA  94

seq1  ATGCATTTTCTTTGCAATTTTATCTGTTATACCATAAAACATATATTTTA  149
      ||||| ||||||||||| ||||||||||||||||||||||||||| ||||
seq2  ATGCA-TTTCTTTGCAA-TTTATCTGTTATACCATAAAACATATA-TTTA  141

seq1  TATGTAGTGAAAGTGTTTTTGATTCAGCTTACCTGTTAGACTTCTAGTAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGTGAAAGTGTTTTTGATTCAGCTTACCTGTTAGACTTCTAGTAG  191

seq1  AAAAAGTTAATGGTGGAATACATTTAGAATACGTCT-AAAAAGATCTAAC  248
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAAAGTTAATGGTGGAATACATTTAGAATACGTCTAAAAAAGATCTAAC  241

seq1  TCAGAAAGAATGAATAAATTCTTATTCAGTGAGAAGTTGTAGATACCCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGAATGAATAAATTCTTATTCAGTGAGAAGTTGTAGATACCCCA  291

seq1  GGAATGATAAACAAAGAAGGAAAGAAAATAACAGAAATTTGGTACTTTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGATAAACAAAGAAGGAAAGAAAATAACAGAAATTTGGTACTTTGA  341

seq1  TAAAAGTACTGATCTGCTAATGATCCTAGTTGTGCCAAGGATACTATAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTACTGATCTGCTAATGATCCTAGTTGTGCCAAGGATACTATAGA  391

seq1  GAAGAATCTAGAATTAAGGAACCATCTTGCTTTTCCCTGCCCCACTTTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATCTAGAATTAAGGAACCATCTTGCTTTTCCCTGCCCCACTTTCC  441

seq1  TATGTCTTCATGTTCCTACAAACGAAATACAAATATTCGCCAACAATTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTTCATGTTCCTACAAACGAAATACAAATATTCGCCAACAATTTT  491

seq1  AGGATTCCTTACCCCTCACAAGGATAAAAGGTGTAGTCTCCCCTCCCCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCCTTACCCCTCACAAGGATAAAAGGTGTAGTCTCCCCTCCCCCA  541

seq1  GCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCTGTTCATTCGTTCTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCTGTTCATTCGTTCTGC  591

seq1  CACGCCCACTGCTGGAACCTGCCGCTTTGCTGTTCCGAAGCCATCACATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCCACTGCTGGAACCTGCCGCTTTGCTGTTCCGAAGCCATCACATG  641

seq1  CTCACCCTACTACTGGACCTGAGATTATTCGGCGGGAATAGGGTCCCCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCTACTACTGGACCTGAGATTATTCGGCGGGAATAGGGTCCCCTC  691

seq1  CCCCTTCCTTCATAACTAGTGTCGCAACAGTAAAATTTGGGCTTTGATCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCTTCATAACTAGTGTCGCAACAGTAAAATTTGGGCTTTGATCA  741

seq1  GAATAACTGTCTTGGCTACATTTCTTTCTCTCGCTACCTAGCCCCTCTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACTGTCTTGGCTACATTTCTTTCTCTCGCTACCTAGCCCCTCTTC  791

seq1  TCTTCCAGGATTCCAAAATGCCTTTCCAGGCTAGAACCCAGGTTGTGGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGGATTCCAAAATGCCTTTCCAGGCTAGAACCCAGGTTGTGGTC  841

seq1  TGCTGGCCAGACACAACAAAAAGGAAAATGGAGAAGGTTCAGAGAAGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCCAGACACAACAAAAAGGAAAATGGAGAAGGTTCAGAGAAGTTT  891

seq1  GGGAGCATAAGGAATATCTGTCCCATTCTTGTGAAATAGAGGTACAACCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCATAAGGAATATCTGTCCCATTCTTGTGAAATAGAGGTACAACCT  941

seq1  TGAGTGTCTGGCATGTCTAATGCTGTAAAGGCTATAGCCTCATGCAGTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTCTGGCATGTCTAATGCTGTAAAGGCTATAGCCTCATGCAGTTC  991

seq1  CACTGTGATTCATGAAGGTTCTAATTACTACTTCAGAATGCTTAGATTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGATTCATGAAGGTTCTAATTACTACTTCAGAATGCTTAGATTTA  1041

seq1  AAAAGGAAAATGTGTGGACACTCAAAATCCAAGTTTGGAAGCAATGAAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAATGTGTGGACACTCAAAATCCAAGTTTGGAAGCAATGAAAG  1091

seq1  AATTC  1103
      |||||
seq2  AATTC  1096