BAC Information

Click to search

BAC

Clone NameB6Ng01-003O20
Chromosome3 (Build37)18 (Build37)
Map Location 41,058,901 - 41,059,39762,082,965 - 62,084,079
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003O20.bB6Ng01-003O20.g
ACCDH841486DH841487
length9521,120
definitionDH841486|Mus musculus domesticus DNA, BAC clone: B6Ng01-003O20, 5' end.DH841487|Mus musculus domesticus DNA, BAC clone: B6Ng01-003O20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,901 - 41,059,397)(62,082,965 - 62,084,079)
sequence
gaattccttaatccacttagatttgaccttagtacaaggagatagaaatg
gatcaattcgcattcttctacatcataaccgccagttgtgccagcaccat
ttgttgaaaatgctatcttttttcccactggatggttttagctcccttgt
cgaagatcaagtgaccataggtgtgtgggttcatctctaggtcttcaatt
ctgttccattggtctacttgtctgtcgctataccagtaccatgcagtttt
tatcacaattgctctgtagtacagctttaggtcaggcatggtgattccac
cagaggttcttttatccttgagaagagtttttgctatcttaggttttttg
ttattgcagatgaatctgccgattgccttttctaattcgttgaagaattg
agttggaattttgatggggattgcattgaatctgtagattgcttttggca
agacggccatttttactatattggtcctgccaatccatgagcatggaaga
tacaaggatggaaaccacgccctagaaaaagcaagaaggtaatccctcaa
caaaactaaaataagacagccataagaacagaatgccaactttaacaaca
gaattttaaagctgaattagtttaatagtttttctatctgaagtgcagac
cagaaatattctttcctccataatgacgcaagcaattcataagcagcata
tttagtaaaagtagaaacgagtgaactctgccaacctaatctcccttacg
tagatatcaccaggtagaatttagaattaactaaaagttaattctcttta
gaattaactaaaaggccccaatgagccatctgcttctctttgatcgcccc
ctttgggtgttagaccctcagttggctccttgactcagaacagtgaccac
ttctttcagctgtctataccactgtgtggtcagtgtatttattagacccc
ca
gaattcatgtatcgggctagactggctggccactgagctcctgtaatcag
tccgtttatccctgttttccctgcccagggactaggatcagcttttactt
gggtgtcaggatccaaacccagatttcacaggcaagcactttattgatgg
agtcatctccctcgtcaacaagcaacatttaaaacccagagtttgcatca
gattttaaaaggattataaaagcaacagagggacttaagaagttcactgg
ggataggggtaagacatattcattatgtatggccagggcagtggcagggg
caggggacggagttatgatcaaaatataccatgtacacatacacaattgt
caaagagtgaatcctaaaacataataaaaattatgattggcacaagcacc
tctcatttcctcagcgagcaagcagctcttataagacaaaccagccaaat
tcgtgcttctggtttccagaaacagccctcactcagggacttggtgtttg
atgtctgagaaaataaaggctgagagattgtgcggaacgtgtccagctcc
atccagatcattggtggctcaagtggcactcacgtttagttatttcgccc
ctcaagcactcaactttcctgcctcgtggaaagcacgtggcctctctggt
tcccatttcggattgctagcctatgatctttctcttgtctgggatctggg
gcaatattttaagatatcactcgctgggttgccaaaaatgttgtggagcg
tgagtcacacagaatgcagcaggtttgctctacatctgcaccactgccat
ttgctaggcattctcgtgggtgctgtgctgtgtgttggccgggcttagcg
gtttatgtattccgctagcagagcgtcgtgacaacaaagaaaggctccag
gaaatgcgtcctcaaggagacaaaatctttccttgataaatcctgcagaa
aactcaaacaaacaaacaaacaaacaacctctctttctgaagcaaagtct
gcataatttacatttccatcatgttagcgaatagtgactctgaatttaag
gagctgcacttgggcattaataccaggatcttcaggtggcacacgccttt
agccacttgggggaggcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058901_41059397
seq2: B6Ng01-003O20.b_51_548 (reverse)

seq1  ATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATC  50
      |||| |||||||||||||||||||||| ||| || |||||||||||  ||
seq2  ATCTTCCATGCTCATGGATTGGCAGGACCAATATAGTAAAAATGGCCGTC  50

seq1  TTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAAC  100

seq1  TCAATTCTTCAACGAATTTGAAAGAGCAATCTGCAAATTCATCTGGAATA  150
      |||||||||||||||||| ||||  |||||| ||| ||||||||| ||||
seq2  TCAATTCTTCAACGAATTAGAAAAGGCAATCGGCAGATTCATCTGCAATA  150

seq1  ACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAACAGAACCTCT  200
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  ACAAAAAACCTAAGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCT  200

seq1  GGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGAT  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTGGAATCACCATGCCTGACCTAAAGCTGTACTACAGAGCAATTGTGAT  250

seq1  AAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATA  300
      |||||||||||||||||||||||| |||||||||| |||||||||||| |
seq2  AAAAACTGCATGGTACTGGTATAGCGACAGACAAGTAGACCAATGGAACA  300

seq1  GAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTC  350
      |||||||||||  ||| | ||| |||||||||||||||||||||||||||
seq2  GAATTGAAGACCTAGAGATGAACCCACACACCTATGGTCACTTGATCTTC  350

seq1  GACAAGGGAGCTAAAACCATCCAGT-GGAAAAAAGACAGCATTTTCAACA  399
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  GACAAGGGAGCTAAAACCATCCAGTGGGAAAAAAGATAGCATTTTCAACA  400

seq1  AATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGAT  449
      ||||||||||||||||||||  ||||| ||||||||||||||||||||||
seq2  AATGGTGCTGGCACAACTGGCGGTTATGATGTAGAAGAATGCGAATTGAT  450

seq1  CCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAA  497
      ||| | ||||||||||||||||||||||||||||||||||| ||||||
seq2  CCATTTCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAA  498

seq1: chr18_62082965_62084079
seq2: B6Ng01-003O20.g_69_1188

seq1  GAATTCATGTATCGGGCTAGACTGGCTGGCCACTGAGCTCCTGTAATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTATCGGGCTAGACTGGCTGGCCACTGAGCTCCTGTAATCAG  50

seq1  TCCGTTTATCCCTGTTTTCCCTGCCCAGGGACTAGGATCAGCTTTTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTTATCCCTGTTTTCCCTGCCCAGGGACTAGGATCAGCTTTTACTT  100

seq1  GGGTGTCAGGATCCAAACCCAGATTTCACAGGCAAGCACTTTATTGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCAGGATCCAAACCCAGATTTCACAGGCAAGCACTTTATTGATGG  150

seq1  AGTCATCTCCCTCGTCAACAAGCAACATTTAAAACCCAGAGTTTGCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTCCCTCGTCAACAAGCAACATTTAAAACCCAGAGTTTGCATCA  200

seq1  GATTTTAAAAGGATTATAAAAGCAACAGAGGGACTTAAGAAGTTCACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAAAGGATTATAAAAGCAACAGAGGGACTTAAGAAGTTCACTGG  250

seq1  GGATAGGGGTAAGACATATTCATTATGTATGGCCAGGGCAGTGGCAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGGGTAAGACATATTCATTATGTATGGCCAGGGCAGTGGCAGGGG  300

seq1  CAGGGGACGGAGTTATGATCAAAATATACCATGTACACATACACAATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGACGGAGTTATGATCAAAATATACCATGTACACATACACAATTGT  350

seq1  CAAAGAGTGAATCCTAAAACATAATAAAAATTATGATTGGCACAAGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTGAATCCTAAAACATAATAAAAATTATGATTGGCACAAGCACC  400

seq1  TCTCATTTCCTCAGCGAGCAAGCAGCTCTTATAAGACAAACCAGCCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCCTCAGCGAGCAAGCAGCTCTTATAAGACAAACCAGCCAAAT  450

seq1  TCGTGCTTCTGGTTTCCAGAAACAGCCCTCACTCAGGGACTTGGTGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCTTCTGGTTTCCAGAAACAGCCCTCACTCAGGGACTTGGTGTTTG  500

seq1  ATGTCTGAGAAAATAAAGGCTGAGAGATTGTGCGGAACGTGTCCAGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGAGAAAATAAAGGCTGAGAGATTGTGCGGAACGTGTCCAGCTCC  550

seq1  ATCCAGATCATTGGTGGCTCAAGTGGCACTCACGTTTAGTTATTTCGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATCATTGGTGGCTCAAGTGGCACTCACGTTTAGTTATTTCGCCC  600

seq1  CTCAAGCACTCAACTTTCCTGCCTCGTGGAAAGCACGTGGCCTCTCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCACTCAACTTTCCTGCCTCGTGGAAAGCACGTGGCCTCTCTGGT  650

seq1  TCCCATTTCGGATTGCTAGCCTATGATCTTTCTCTTGTCTGGGATCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTCGGATTGCTAGCCTATGATCTTTCTCTTGTCTGGGATCTGGG  700

seq1  GCAATATTTTAAGATATCACTCGCTGGGTTGCCAAAAATGTTGTGGAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATTTTAAGATATCACTCGCTGGGTTGCCAAAAATGTTGTGGAGCG  750

seq1  TGAGTCACACAGAATGCAGCAGGTTTGCTCTACATCTGCACCACTGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACACAGAATGCAGCAGGTTTGCTCTACATCTGCACCACTGCCAT  800

seq1  TTGCTAGGCATTCTCGTGGGTGCTGTGCTGTGTGTTGGCCGGGCTTAGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGGCATTCTCGTGGGTGCTGTGCTGTGTGTTGGCCGGGCTTAGCG  850

seq1  GTTTATGTATTCCGCTAGCAGAGCGTCGTGACAACAAAG-AAGGCTCCAG  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTTATGTATTCCGCTAGCAGAGCGTCGTGACAACAAAGAAAGGCTCCAG  900

seq1  GAAATGCGTCCTCAAGGAGACAAAATC-TTCCTTGATAAATCCTGCAGAA  948
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAATGCGTCCTCAAGGAGACAAAATCTTTCCTTGATAAATCCTGCAGAA  950

seq1  AACCCAAACAAACAAACAAACAAACAACCCCTCTTTTCTG-AGCAAAGTC  997
      ||| ||||||||||||||||||||||||| ||| |||||| |||||||||
seq2  AACTCAAACAAACAAACAAACAAACAACCTCTC-TTTCTGAAGCAAAGTC  999

seq1  TGCATAATTTACATTTCCATCATGTTAGCGATTAGTGACTCTGAATTT-A  1046
      ||||||||||||||||||||||||||||||| |||||||||||||||| |
seq2  TGCATAATTTACATTTCCATCATGTTAGCGAATAGTGACTCTGAATTTAA  1049

seq1  GGAGCCTGCACCTTTGGCATT-ATCACAGGATCTTCAGGTGGCACACGCC  1095
      |||| ||||| ||| |||||| ||  ||||||||||||||||||||||||
seq2  GGAG-CTGCA-CTTGGGCATTAATACCAGGATCTTCAGGTGGCACACGCC  1097

seq1  TTTAG-CACTT--GGGAGGCAGA  1115
      ||||| |||||  ||||||||||
seq2  TTTAGCCACTTGGGGGAGGCAGA  1120