BAC Information

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BAC

Clone NameB6Ng01-003O23
Chromosome18 (Build37)
Map Location 88,656,869 - 88,657,967
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003O23.bB6Ng01-003O23.g
ACCDH841492DH841493
length1,1381,085
definitionDH841492|Mus musculus domesticus DNA, BAC clone: B6Ng01-003O23, 5' end.DH841493|Mus musculus domesticus DNA, BAC clone: B6Ng01-003O23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatcccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctctcaa
tgagagctagagaaagtatccagagctaaaggatctcactctataggtga
aaacatatgaactaccagtactcctgagctcttgactctagctgcatatg
tatcaagatgctagtcgcatcactgaaagaactaatgaaccgcgactttg
gtgcccgttacaggaacgctaggtcaagggggggaatg
gaattcacagatgttaaagtagcttcagactgctcttctattgtttctta
atgaataacaggggcatatgtaaattagcacatggaaaataaacattaat
caagtgtaagagatgcaaagcattgtgcaaggctgagcctttggttttct
gggcatgtacaattctttgccaattgagctgatggaactgctatctcact
tcaaaataataatgcagcagtttcaacattttagcgtccaccttctccgt
aactagcagcactattcaaatgcttttgatgtgatagcagaatgattccc
tcttttgagagtgatgatcagggttcttgtgatttcctggtacaaactat
ttgaaaggttgaaatggggagatgagtagcctatgatgatattgaattgc
tagggtatgtgtctgaacagccaggaacagagaaatacaaagcccaacta
gaaagtgttctttgtactccagggacttttagagtttcttggtacatata
gattttggaaattttttttcgtatggtttagatttattcttttgaccttg
tccatataaagtgaaacacagtttttcaatgctcacaaaacagaattaga
cattaaatgttcatgtgtgaacagttcgcagacatcaaaattttttggtt
atttgtacacagttcatccagtaaaaccttttaaaccagtcgttattcca
taaagccaaaatgtcacacctgaaatcatagcacaggcttacattttcaa
tggagccatagaaaacaaagcataatagtgcctatctcattgtttcaaag
tttttttttttcatcatttgctcatattcccttatcagaagcaccacaga
aaccactgcctttacagtaaatgaagtggaaattactgaggaatacttgc
atgagttgtacaccaacagagtaaaagtgtgaatgcatgaatgcatgatg
atgagtagacaatcacctagtgtatagcagaaattaggatcatggagagg
atacgactagagaaaaacattgtatcatgtatttgctcagtgactttcat
gtttaaaacaggcttctgaactgcagttacctacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88656869_88657967
seq2: B6Ng01-003O23.g_67_1151 (reverse)

seq1  GGTAGGTAACTGCAATTTTCAGAAGCTGTTTTTAAAACCATGGAAGTCAC  50
      ||||||||||||||   |||||||||   |||||||  |||| |||||||
seq2  GGTAGGTAACTGCA--GTTCAGAAGCCTGTTTTAAA--CATGAAAGTCAC  46

seq1  TGAGCAAATACATGATACAATGTTTTTCTCTAGTCCGTTATCCCTCT-CA  99
      |||||||||||||||||||||||||||||||||||   ||| ||||| ||
seq2  TGAGCAAATACATGATACAATGTTTTTCTCTAGTC--GTAT-CCTCTCCA  93

seq1  TGATTCCTTAAATGTCTGCTTATACAACTAGGTTAATTTGTCTACTCATT  149
      ||| ||||  ||| ||||| ||||| ||||||| |  ||||||||||| |
seq2  TGA-TCCT--AATTTCTGC-TATAC-ACTAGGTGA--TTGTCTACTCA-T  135

seq1  CATCCATGCATTCATGCATTCACACTTTTACTCTGTTGGTGTACAACTCA  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAT-CATGCATTCATGCATTCACACTTTTACTCTGTTGGTGTACAACTCA  184

seq1  TGCAAGTATTCCTCAGTAATTTCCACTTCATTTACTGTAAAGGCAGTGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTATTCCTCAGTAATTTCCACTTCATTTACTGTAAAGGCAGTGGT  234

seq1  TTCTGTGGTGCTTCTGATAAGGGAATATGAGCAAATGATG-AAAAAAAAA  298
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCTGTGGTGCTTCTGATAAGGGAATATGAGCAAATGATGAAAAAAAAAA  284

seq1  ACTTTGAAACAATGAGATAGGCACTATTATGCTTTGTTTTCTATGGCTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAACAATGAGATAGGCACTATTATGCTTTGTTTTCTATGGCTCC  334

seq1  ATTGAAAATGTAAGCCTGTGCTATGATTTCAGGTGTGACATTTTGGCTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAATGTAAGCCTGTGCTATGATTTCAGGTGTGACATTTTGGCTTT  384

seq1  ATGGAATAACGACTGGTTTAAAAGGTTTTACTGGATGAACTGTGTACAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATAACGACTGGTTTAAAAGGTTTTACTGGATGAACTGTGTACAAA  434

seq1  TAACCAAAAAATTTTGATGTCTGCGAACTGTTCACACATGAACATTTAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAAAAATTTTGATGTCTGCGAACTGTTCACACATGAACATTTAAT  484

seq1  GTCTAATTCTGTTTTGTGAGCATTGAAAAACTGTGTTTCACTTTATATGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATTCTGTTTTGTGAGCATTGAAAAACTGTGTTTCACTTTATATGG  534

seq1  ACAAGGTCAAAAGAATAAATCTAAACCATACGAAAAAAAATTTCCAAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTCAAAAGAATAAATCTAAACCATACGAAAAAAAATTTCCAAAAT  584

seq1  CTATATGTACCAAGAAACTCTAAAAGTCCCTGGAGTACAAAGAACACTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTACCAAGAAACTCTAAAAGTCCCTGGAGTACAAAGAACACTTT  634

seq1  CTAGTTGGGCTTTGTATTTCTCTGTTCCTGGCTGTTCAGACACATACCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGGGCTTTGTATTTCTCTGTTCCTGGCTGTTCAGACACATACCCT  684

seq1  AGCAATTCAATATCATCATAGGCTACTCATCTCCCCATTTCAACCTTTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTCAATATCATCATAGGCTACTCATCTCCCCATTTCAACCTTTCA  734

seq1  AATAGTTTGTACCAGGAAATCACAAGAACCCTGATCATCACTCTCAAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTGTACCAGGAAATCACAAGAACCCTGATCATCACTCTCAAAAG  784

seq1  AGGGAATCATTCTGCTATCACATCAAAAGCATTTGAATAGTGCTGCTAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCATTCTGCTATCACATCAAAAGCATTTGAATAGTGCTGCTAGT  834

seq1  TACGGAGAAGGTGGACGCTAAAATGTTGAAACTGCTGCATTATTATTTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGAGAAGGTGGACGCTAAAATGTTGAAACTGCTGCATTATTATTTTG  884

seq1  AAGTGAGATAGCAGTTCCATCAGCTCAATTGGCAAAGAATTGTACATGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGATAGCAGTTCCATCAGCTCAATTGGCAAAGAATTGTACATGCC  934

seq1  CAGAAAACCAAAGGCTCAGCCTTGCACAATGCTTTGCATCTCTTACACTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACCAAAGGCTCAGCCTTGCACAATGCTTTGCATCTCTTACACTT  984

seq1  GATTAATGTTTATTTTCCATGTGCTAATTTACATATGCCCCTGTTATTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATGTTTATTTTCCATGTGCTAATTTACATATGCCCCTGTTATTCA  1034

seq1  TTAAGAAACAATAGAAGAGCAGTCTGAAGCTACTTTAACATCTGTGAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAACAATAGAAGAGCAGTCTGAAGCTACTTTAACATCTGTGAATT  1084

seq1  C  1099
      |
seq2  C  1085