BAC Information

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BAC

Clone NameB6Ng01-004O24
Chromosome18 (Build37)
Map Location 8,737,270 - 8,868,399
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039606, Wac, LOC665121, LOC225134, LOC665132, EG433158, EG545242
Downstream geneLOC665161, Fzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004O24.bB6Ng01-004O24.g
ACCDH842213DH842214
length1,1081,100
definitionDH842213|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O24, 5' end.DH842214|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,737,270 - 8,738,392)(8,867,284 - 8,868,399)
sequence
gaattcaacatttgccaatagatgacaacaaattccttgtgtctgtagat
aagtaatggagtatttataacaagaaaattaattagagctacatgcatgg
aaaccttggggaaaaagccactggtgtgtaaaagtatggttttggagcat
atgaagcaaaagggttcaattacgtaaggttaaaaacatgtagttctctc
ccagggaagctaaacagaggaaaactatgcacacttcacgacatggacaa
taacagaaatgatctgccttctgtctctattgggcagcaaggaaactctg
atcttaaacatcataagaatttaagtagtacttgtatttatcagatgagt
tgttggagagctagacatttgttataatatttctgttatttctgttttgg
gttttgttttctttctttctttcttctgctttttggtttcagtttttttg
tttgtttgtttgctttgttttgtttttgtcctgttcagacttgcctggcc
tcagactttctatgtagtttgatcttgcctccaccttgggaatgctgtga
agaaagctgtaccaccagggcttatgcagtgctaggtattaaccccaggt
tttcctatttgctaggtaatcactccaccaaccaaactgcattctaaagc
catgaaaatctataataaagaatttttaaaagaaaatatgtttacccaga
acacattgagtggcatctagtcataactgtatttgctgagtattagttct
tttttatattatactttaaattaagaaacgtagttaagtaaatttaaatg
aattaatcagagctatggtccaaattgaaacagccactaacattaatgtt
aatagtctgtcccccaggagaagtgtgcacctctgcactttatgtctgac
tctgataatgttacccatagaggtccagagacatcatatctctcaaacaa
acttgaccttgaaatcatctcctatattggtagctttggtcaacatgaca
catcttggagagggaatcttaattttgaaatgccgccactatggctataa
gcagtctacaggtcatttctgattatatgactagcagacacagaatcact
gggggtag

gaattctttctgaagccccatcctggccataaactaatggccgttacttg
cctcagcctcctacatgatgaaattataggcatgagctattttatgagtt
ccttccttgcctgaaaattttcagttctctgaacaaagggtcacattcat
tctggactgggcttcatcagtcatttagccagaatgagcggcagtgaaca
tttggctgatgccatctgcagtttctgcacacattttttttttcctatga
aaaattagaatatatatgtgatttgtgtgtgtgtgacagagagagttgag
tatatatctatatatataatgtatatatctctatatagatatatatgata
atgtatatgcatatgtgaggtacctgtggaagccagaggttaacaacaaa
atatcttcctatattgctttctgtcctatattgtgaaatctctcactaaa
cctggagctctttgaattgatcagtgtgcttggcctgaaactcagggatc
cacttgtttctgcttccccagtgccagggacacaggtaggttgctccaaa
ctcagaggctgtacataattgaactgagggttgcctttaggccttcatgc
ttttgtggcactttactgtctgtgccatctcttagctcaagattaactcc
tggcaggcaggagggtatcttgagatgtctaatgactcatgttccctgag
gtttaaactgactgctcttgtgtaccacatttaccatgaagataattatg
agataggaattaaatacagagatacaacaatggagggaaagctctgcaaa
gtcctatcttcagtgagtacaggtccgtggaaagataaattgggaagtat
ctttagaaatgttcatagaggtatgaaagagatctggagtgccatgtggg
agagtggcatgagaagacagaagtgctgtagcctttgagccaaatctaga
aactcgctgcactcagtatggagtcacagtaatgttgggtctcttggcat
tcacacaatatagagagatcagaacacctataatgtgacctaggaggggt
gagctctgaagttatcgtatgatggaggctggaatgtgatgtgtgtgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_8737270_8738392
seq2: B6Ng01-004O24.b_46_1153

seq1  GAATTCAACATTTGCCAATAGATGACAACAAATTCCTTGTGTCTGTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATTTGCCAATAGATGACAACAAATTCCTTGTGTCTGTAGAT  50

seq1  AAGTAATGGAGTATTTATAACAAGAAAATTAATTAGAGCTACATGCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGGAGTATTTATAACAAGAAAATTAATTAGAGCTACATGCATGG  100

seq1  AAACCTTGGGGAAAAAGCCACTGGTGTGTAAAAGTATGGTTTTGGAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTGGGGAAAAAGCCACTGGTGTGTAAAAGTATGGTTTTGGAGCAT  150

seq1  ATGAAGCAAAAGGGTTCAATTACGTAAGGTTAAAAACATGTAGTTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCAAAAGGGTTCAATTACGTAAGGTTAAAAACATGTAGTTCTCTC  200

seq1  CCAGGGAAGCTAAACAGAGGAAAACTATGCACACTTCACGACATGGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAAGCTAAACAGAGGAAAACTATGCACACTTCACGACATGGACAA  250

seq1  TAACAGAAATGATCTGCCTTCTGTCTCTATTGGGCAGCAAGGAAACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAAATGATCTGCCTTCTGTCTCTATTGGGCAGCAAGGAAACTCTG  300

seq1  ATCTTAAACATCATAAGAATTTAAGTAGTACTTGTATTTATCAGATGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAACATCATAAGAATTTAAGTAGTACTTGTATTTATCAGATGAGT  350

seq1  TGTTGGAGAGCTAGACATTTGTTATAATATTTCTGTTATTTCTGTTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGAGCTAGACATTTGTTATAATATTTCTGTTATTTCTGTTTTGG  400

seq1  GTTTTGTTTTCTTTCTTTCTTTCTTCTGCTTTTTGGTTTCAGTTTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTCTTTCTTTCTTTCTTCTGCTTTTTGGTTTCAGTTTTTTTG  450

seq1  TTTGTTTGTTTGCTTTGTTTTGTTTTTGTCCTGTTCAGACTTGCCTGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGCTTTGTTTTGTTTTTGTCCTGTTCAGACTTGCCTGGCC  500

seq1  TCAGACTTTCTATGTAGTTTGATCTTGCCTCCACCTTGGGAATGCTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTTCTATGTAGTTTGATCTTGCCTCCACCTTGGGAATGCTGTGA  550

seq1  AGAAAGCTGTACCACCAGGGCTTATGCAGTGCTAGGTATTAACCCCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTGTACCACCAGGGCTTATGCAGTGCTAGGTATTAACCCCAGGT  600

seq1  TTTCCTATTTGCTAGGTAATCACTCCACCAACCAAACTGCATTCTAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATTTGCTAGGTAATCACTCCACCAACCAAACTGCATTCTAAAGC  650

seq1  CATGAAAATCTATAATAAAGAATTTTTAAAAGAAAATATGTTTACCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATCTATAATAAAGAATTTTTAAAAGAAAATATGTTTACCCAGA  700

seq1  ACACATTGAGTGGCATCTAGTCATAACTGTATTTGCTGAGTATTAGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGAGTGGCATCTAGTCATAACTGTATTTGCTGAGTATTAGTTCT  750

seq1  TTTTTATATTATACTTTAAATTAAGAAACGTAGTTAAGTAAATTTAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATTATACTTTAAATTAAGAAACGTAGTTAAGTAAATTTAAATG  800

seq1  AATTAATCAGAGCTATGGTCCAAATTGAAACAGCCACTAACATTAATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCAGAGCTATGGTCCAAATTGAAACAGCCACTAACATTAATGTT  850

seq1  AATAGTCTGTCCCCCAGGAGAAGTGTGCACCTCTGCACTTTATGTCTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCTGTCCCCCAGGAGAAGTGTGCACCTCTGCACTTTATGTCTGAC  900

seq1  TCTGATAATGTTACCCATAGAGGTCCAGAGACATCATATCTCTCAAACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAATGTTACCCATAGAGGTCCAGAGACATCATATCTCTCAAACAA  950

seq1  ACTTGACCTTGAAATCAATCTCCCTATATTGGTTAGCTTTTGGTCAACAT  1000
      |||||||||||||||| |||| |||||||||| |||| ||||||||||||
seq2  ACTTGACCTTGAAATC-ATCT-CCTATATTGG-TAGC-TTTGGTCAACAT  996

seq1  GACACATCTTGGAAGAGGGAATCTTAATTTTGAAAATGCCGCCACTTAAT  1050
      |||||||||||| ||||||||||||||||||| |||||||||||||  ||
seq2  GACACATCTTGG-AGAGGGAATCTTAATTTTG-AAATGCCGCCACT--AT  1042

seq1  TGGCCTATAAGCCAGTCTACAGGTCATTTTCTTGATTAATAATGACTAGC  1100
        | ||||||| |||||||||||||||||   ||||||   |||||||||
seq2  --GGCTATAAG-CAGTCTACAGGTCATTT--CTGATTA--TATGACTAGC  1085

seq1  AGGACACAG-ATCACTGTGGGTAG  1123
      | ||||||| ||||||| ||||||
seq2  A-GACACAGAATCACTGGGGGTAG  1108


seq1: chr18_8867284_8868399
seq2: B6Ng01-004O24.g_68_1167 (reverse)

seq1  GATCACACACATCACGTGTCCCAGCCTCCATCCATACGATAACCTCTCAG  50
      |||||||||||||||   | ||||||||||| |||||||||||   ||||
seq2  GATCACACACATCAC--ATTCCAGCCTCCAT-CATACGATAAC--TTCAG  45

seq1  AAGCTCAACACCCTTCCTA-GTCACA-TATAGGTG-TCTGAATTCTCTCT  97
       ||||   ||||| ||||| |||||| |||||||| |||||  |||||||
seq2  -AGCT---CACCCCTCCTAGGTCACATTATAGGTGTTCTGA--TCTCTCT  89

seq1  ATATTGTGTGAATGCCAAGAGAACCCAACATTACTGTGACTCCCATACTT  147
      ||||||||||||||||||||| ||||||||||||||||||| |||||| |
seq2  ATATTGTGTGAATGCCAAGAG-ACCCAACATTACTGTGACT-CCATAC-T  136

seq1  GAGTTGCAGGCGAGGTTTCTAGGTTTGGCTCAAAGGCTACAGCACCTTCT  197
      ||| |||| |||| |||||||| ||||||||||||||||||||| |||||
seq2  GAG-TGCA-GCGA-GTTTCTAGATTTGGCTCAAAGGCTACAGCA-CTTCT  182

seq1  GTCTTCTCCATGCCACTCTCCCACATGGCACTCCAGATCTCTTTCATACC  247
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCT-CATGCCACTCTCCCACATGGCACTCCAGATCTCTTTCATACC  231

seq1  TCTATGAACATTTCTAAAGATACTTCCCAATTTATCTTTCCACGGACCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAACATTTCTAAAGATACTTCCCAATTTATCTTTCCACGGACCTG  281

seq1  TACTCACTGAAGATAGGACTTTGCAGAGCTTTCCCTCCATTGTTGTATCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACTGAAGATAGGACTTTGCAGAGCTTTCCCTCCATTGTTGTATCT  331

seq1  CTGTATTTAATTCCTATCTCATAATTATCTTCATGGTAAATGTGGTACAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTAATTCCTATCTCATAATTATCTTCATGGTAAATGTGGTACAC  381

seq1  AAGAGCAGTCAGTTTAAACCTCAGGGAACATGAGTCATTAGACATCTCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGTCAGTTTAAACCTCAGGGAACATGAGTCATTAGACATCTCAA  431

seq1  GATACCCTCCTGCCTGCCAGGAGTTAATCTTGAGCTAAGAGATGGCACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCTCCTGCCTGCCAGGAGTTAATCTTGAGCTAAGAGATGGCACAG  481

seq1  ACAGTAAAGTGCCACAAAAGCATGAAGGCCTAAAGGCAACCCTCAGTTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAGTGCCACAAAAGCATGAAGGCCTAAAGGCAACCCTCAGTTCA  531

seq1  ATTATGTACAGCCTCTGAGTTTGGAGCAACCTACCTGTGTCCCTGGCACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTACAGCCTCTGAGTTTGGAGCAACCTACCTGTGTCCCTGGCACT  581

seq1  GGGGAAGCAGAAACAAGTGGATCCCTGAGTTTCAGGCCAAGCACACTGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGCAGAAACAAGTGGATCCCTGAGTTTCAGGCCAAGCACACTGAT  631

seq1  CAATTCAAAGAGCTCCAGGTTTAGTGAGAGATTTCACAATATAGGACAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAAAGAGCTCCAGGTTTAGTGAGAGATTTCACAATATAGGACAGA  681

seq1  AAGCAATATAGGAAGATATTTTGTTGTTAACCTCTGGCTTCCACAGGTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATATAGGAAGATATTTTGTTGTTAACCTCTGGCTTCCACAGGTAC  731

seq1  CTCACATATGCATATACATTATCATATATATCTATATAGAGATATATACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATATGCATATACATTATCATATATATCTATATAGAGATATATACA  781

seq1  TTATATATATAGATATATACTCAACTCTCTCTGTCACACACACACAAATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATATAGATATATACTCAACTCTCTCTGTCACACACACACAAATC  831

seq1  ACATATATATTCTAATTTTTCATAGGAAAAAAAAAATGTGTGCAGAAACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATTCTAATTTTTCATAGGAAAAAAAAAATGTGTGCAGAAACT  881

seq1  GCAGATGGCATCAGCCAAATGTTCACTGCCGCTCATTCTGGCTAAATGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGGCATCAGCCAAATGTTCACTGCCGCTCATTCTGGCTAAATGAC  931

seq1  TGATGAAGCCCAGTCCAGAATGAATGTGACCCTTTGTTCAGAGAACTGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGCCCAGTCCAGAATGAATGTGACCCTTTGTTCAGAGAACTGAA  981

seq1  AATTTTCAGGCAAGGAAGGAACTCATAAAATAGCTCATGCCTATAATTTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCAGGCAAGGAAGGAACTCATAAAATAGCTCATGCCTATAATTTC  1031

seq1  ATCATGTAGGAGGCTGAGGCAAGTAACGGCCATTAGTTTATGGCCAGGAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTAGGAGGCTGAGGCAAGTAACGGCCATTAGTTTATGGCCAGGAT  1081

seq1  GGGGCTTCAGAAAGAATTC  1116
      |||||||||||||||||||
seq2  GGGGCTTCAGAAAGAATTC  1100


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