BAC Information

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BAC

Clone NameB6Ng01-005C15
Chromosome18 (Build37)5 (Build37)
Map Location 54,749,909 - 54,750,37260,867,126 - 60,867,295
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCcdc100, Csnk1g3, EG433184, LOC667360
Downstream geneEG545257, LOC100042489, Zfp608, LOC100043089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005C15.bB6Ng01-005C15.g
ACCDH842377DH842378
length458257
definitionDH842377|Mus musculus domesticus DNA, BAC clone: B6Ng01-005C15, 5' end.DH842378|Mus musculus domesticus DNA, BAC clone: B6Ng01-005C15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,749,909 - 54,750,372)(60,867,126 - 60,867,295)
sequence
tcattggtctggagcattttcttggtttccaatactacaaaagattccag
gatcttctggtatcattgtccctattttaaaggtttctgaaacacctaga
aaagtatttggaagccagggtttggggttctggagtatctgttctctcag
cctctcagtgtgaagagttaagagatgtatccaaatattatacattcgca
cgcgcgagcacgcacacacacatgtgcacaccgacatgttgtggtaaata
ttattagggatgtctacctcgcctctgatcacttagttcccaaataaaag
aaataaatctttatatttttaataaaacttaacagcactagagctgggca
gatctgctttgtctgctcctattccacttggctagccctcatggccatgt
tctcatgatccacctactccacggagccttccattctcctcccctcccct
cccctctc
tgtttatctctgtgccccatttttttatttggttatttggttcattgaag
tctaccttcttgagttctttatatattttggatgttagccctctgtcagc
tgtagtgttagtgaagacattttctcattctgtaggctgatattttgtct
tattaagtaagtgtcctttgtctggataagctttgcagatccatgaggtc
acatttattaattgttgatcttagaggtttttgttgttgttgttttttgt
ttgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_54749909_54750372
seq2: B6Ng01-005C15.b_43_506 (reverse)

seq1  GAGAGGGGAGGGGAGGGGAGGAGAATGGAAGGCTCCGTGGAGTAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGAGGGGAGGGGAGGAGAATGGAAGGCTCCGTGGAGTAGGTGGA  50

seq1  TCATGAGAACATGGCCATGAGGGCTAGCCAAGTGGAATAGGAGCAGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGAACATGGCCATGAGGGCTAGCCAAGTGGAATAGGAGCAGACAA  100

seq1  AGCAGATCTGCCCAGCTCTAGTGCTGTTAAGTTTTATTAAAAATATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATCTGCCCAGCTCTAGTGCTGTTAAGTTTTATTAAAAATATAAAG  150

seq1  ATTTATTTCTTTTATTTGGGAACTAAGTGATCAGAGGCGAGGTAGACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTCTTTTATTTGGGAACTAAGTGATCAGAGGCGAGGTAGACATC  200

seq1  CCTAATAATATTTACCACAACATGTCGGTGTGCACATGTGTGTGTGCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAATATTTACCACAACATGTCGGTGTGCACATGTGTGTGTGCGTG  250

seq1  CTCGCGCGTGCGAATGTATAATATTTGGATACATCTCTTAACTCTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCGCGTGCGAATGTATAATATTTGGATACATCTCTTAACTCTTCACA  300

seq1  CTGAGAGGCTGAGAGAACAGATACTCCAGAACCCCAAACCCTGGCTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGCTGAGAGAACAGATACTCCAGAACCCCAAACCCTGGCTTCCA  350

seq1  AATACTTTTCTAGGTGTTTCAGAAACCTTTAAAATAGGGACAATGATACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTTCTAGGTGTTTCAGAAACCTTTAAAATAGGGACAATGATACC  400

seq1  AGAAGATCCTGGAATCTTTTGTAGTATTGGAAACCAAGAAAATGCTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCCTGGAATCTTTTGTAGTATTGGAAACCAAGAAAATGCTCCAG  450

seq1  ACCAATGAGAATTC  464
      ||||||||||||||
seq2  ACCAATGAGAATTC  464

seq1: chr5_60867126_60867295
seq2: B6Ng01-005C15.g_80_330 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  AAAACAAACAAAAAACAACAACAACAAAAACCTCTAAGATCAACAATTAA  50

seq1  --------------------------------------AAA--ACA----  6
                                            |||  |||    
seq2  TAAATGTGACCTCATGGATCTGCAAAGCTTATCCAGACAAAGGACACTTA  100

seq1  ------AAAACAAAA-AACAACAACAACAACGACAAAA--ACCCCACTAA  47
            || |||||| | || |    | || || ||||   |  ||||||
seq2  CTTAATAAGACAAAATATCAGCCTACAGAATGAGAAAATGTCTTCACTAA  150

seq1  TCCAACAACATTTGATGGAGAGCAAATATCTAATATAAATAAAGAACTCA  97
          || |||  |||  ||| || || ||| || ||| ||||||||||||
seq2  ---CACTACAGCTGACAGAGGGCTAACATCCAAAATATATAAAGAACTCA  197

seq1  AGAAGCTAGACACCCCCCAAAAAAAAAAATCAAACAAGCCAATCCAAAAA  147
      ||||| |||||  |         ||  || |||| || | |||  |||||
seq2  AGAAGGTAGACTTC---------AATGAACCAAATAACCAAATAAAAAAA  238

seq1  TGGGGTATAGAATTAAACAGAGA  170
      |||||           |||||||
seq2  TGGGG----------CACAGAGA  251