BAC Information

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BAC

Clone NameB6Ng01-005F09
Chromosome8 (Build37)18 (Build37)
Map Location 42,369,455 - 42,370,56720,367,933 - 20,368,350
singlet/doubletsingletsinglet
Overlap genePcm1
Upstream geneFgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1
Downstream geneAsah1, Frg1, LOC100039376, Gm1815, LOC671994, Zfp353, EG620772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005F09.bB6Ng01-005F09.g
ACCDH842498DH842499
length1,102412
definitionDH842498|Mus musculus domesticus DNA, BAC clone: B6Ng01-005F09, 5' end.DH842499|Mus musculus domesticus DNA, BAC clone: B6Ng01-005F09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,369,455 - 42,370,567)(20,367,933 - 20,368,350)
sequence
gaattccatatggagcttgggatgacctgttaactgctggtcctcttacc
ttcgactcctccgtgctcacagtataggcattctccaccatgcccagttg
aattactttttatcttaaattgtgtatctaccatttgtaaggttcttgag
gataatcataaagtctttttatatacaacattaagtttttgaaatgagtt
tgcaagtcccgtatttggaatatttgtaaaagaattagttatttgttaag
ataagttaactagctatatagtaatatttaatttaaaaatttgaagtcca
gatatgttgcagtcttattttttcagatattcagatggcatttctaaaat
attatacatactctcttcctcttaggagatttcataatattggagcctcg
atgtgcattttgctgaataaagtatattatatcctgttttgttcttgcca
ctgtgtatctgctctttcacagaactcttcagatatttttgatgagcttc
tggtttcagaatcatttgtgtagagctggcttcttaaccgagggttcacg
tgactgaatgttaactgaacgggggcaggccttacaaaattgcttatttc
caacatactacagcgaaaaatgaagccagaagtaaatgctgagtgaatac
aaggtgttttccagcattgctaaacctgtgtcgcatcatgtgcactttgt
actgacagcctacaaggccaaccgaacacgttaccaaaggcttcctgact
tgtttcaccgcacgtacaaagtagtctgctctgaacagtgtagttgtgga
aagttgtggaaaacttgtagtgtttccctttatcatacttcatcctgtta
gtaccgagcttagtatatcttaggatttatttttgttccagtgtttattc
aaaaaaatagttgatttgctgatttttttttttcattttgtttttgagac
gaaacttttttggtgtagccaagatgcccacttttgactatacattatac
gtatatacatacattagatatgtgaaaagaatttggatttatggcgaagt
caatatccaaaatgatttcaacatcactggtaatttggattactactgta
ta
caaacatctgctggaggggatattacaattgatgctatctagaaactatt
ctggagtttaaggagtatagtgaaggggaatcagtagacctactcattta
aattggtttaaatatagatcatttgtgttgggagtatggcccagtggtta
aaattcctgctgcataagcataaagcctggggtttgtaccctagtgccta
tttcagagtgagatgactactgagatctgtgagctccagacttgccacaa
tttaatttgcttaatatccaaagtccattcatagtgagcttcttttaagg
atctctctctctctctctctctctctctctctctctctctctctccatct
atccatctctctcctacatccatacccagggacttatagactctactatg
atctacatctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_42369455_42370567
seq2: B6Ng01-005F09.b_46_1147

seq1  GAATTCCATATGGAGCTTGGGATGACCTGTTAACTGCTGGTCCTCTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGGAGCTTGGGATGACCTGTTAACTGCTGGTCCTCTTACC  50

seq1  TTCGACTCCTCCGTGCTCACAGTATAGGCATTCTCCACCATGCCCAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGACTCCTCCGTGCTCACAGTATAGGCATTCTCCACCATGCCCAGTTG  100

seq1  AATTACTTTTTATCTTAAATTGTGTATCTACCATTTGTAAGGTTCTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTTTTATCTTAAATTGTGTATCTACCATTTGTAAGGTTCTTGAG  150

seq1  GATAATCATAAAGTCTTTTTATATACAACATTAAGTTTTTGAAATGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCATAAAGTCTTTTTATATACAACATTAAGTTTTTGAAATGAGTT  200

seq1  TGCAAGTCCCGTATTTGGAATATTTGTAAAAGAATTAGTTATTTGTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTCCCGTATTTGGAATATTTGTAAAAGAATTAGTTATTTGTTAAG  250

seq1  ATAAGTTAACTAGCTATATAGTAATATTTAATTTAAAAATTTGAAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTAACTAGCTATATAGTAATATTTAATTTAAAAATTTGAAGTCCA  300

seq1  GATATGTTGCAGTCTTATTTTTTCAGATATTCAGATGGCATTTCTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTTGCAGTCTTATTTTTTCAGATATTCAGATGGCATTTCTAAAAT  350

seq1  ATTATACATACTCTCTTCCTCTTAGGAGATTTCATAATATTGGAGCCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACATACTCTCTTCCTCTTAGGAGATTTCATAATATTGGAGCCTCG  400

seq1  ATGTGCATTTTGCTGAATAAAGTATATTATATCCTGTTTTGTTCTTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATTTTGCTGAATAAAGTATATTATATCCTGTTTTGTTCTTGCCA  450

seq1  CTGTGTATCTGCTCTTTCACAGAACTCTTCAGATATTTTTGATGAGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATCTGCTCTTTCACAGAACTCTTCAGATATTTTTGATGAGCTTC  500

seq1  TGGTTTCAGAATCATTTGTGTAGAGCTGGCTTCTTAACCGAGGGTTCACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCAGAATCATTTGTGTAGAGCTGGCTTCTTAACCGAGGGTTCACG  550

seq1  TGACTGAATGTTAACTGAACGGGGGCAGGCCTTACAAAATTGCTTATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAATGTTAACTGAACGGGGGCAGGCCTTACAAAATTGCTTATTTC  600

seq1  CAACATACTACAGCGAAAAATGAAGCCAGAAGTAAATGCTGAGTGAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATACTACAGCGAAAAATGAAGCCAGAAGTAAATGCTGAGTGAATAC  650

seq1  AAGGTG-TTTCCAGCATTGCTAAACCTGTGTCGCATCATGTGCACTTTGT  699
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTTTCCAGCATTGCTAAACCTGTGTCGCATCATGTGCACTTTGT  700

seq1  ACTGACAGCCTACAAGGCCAACCGAACACGTTACCAAAGGCTTCCTGACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAGCCTACAAGGCCAACCGAACACGTTACCAAAGGCTTCCTGACT  750

seq1  TGTTTCACCGCACGTACAAAGTAGTCTGCTCTGAACAGTGTAGTTGTGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCACCGCACGTACAAAGTAGTCTGCTCTGAACAGTGTAGTTGTGGA  800

seq1  AAGTTGTGGAAAACTTGTAGTGTTTTCCTTTATCATACTTCATCCTGTTA  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGTTGTGGAAAACTTGTAGTGTTTCCCTTTATCATACTTCATCCTGTTA  850

seq1  GTACCGAGCTTAGTATATCTTAGGATTTATTTTTGTTCCAGTGTTTAATT  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTACCGAGCTTAGTATATCTTAGGATTTATTTTTGTTCCAGTGTTT-ATT  899

seq1  TAAAAAAATAGTTGATTTGCTGACTTTTTTTTTTCATTTTGTTTTTTTGA  949
       |||||||||||||||||||||| |||||||||||||||||  |||||||
seq2  CAAAAAAATAGTTGATTTGCTGATTTTTTTTTTTCATTTTG--TTTTTGA  947

seq1  GACAGAACTTTTCT-GTGTAGCCAAGATGCCCACTTTTGAC-ATACATAT  997
      |||  ||||||| | |||||||||||||||||||||||||| |||||| |
seq2  GACGAAACTTTTTTGGTGTAGCCAAGATGCCCACTTTTGACTATACAT-T  996

seq1  ATACGTATATACATACA-TAGATATGTGAAAAGAATTTTGGATTATGGCA  1046
      ||||||||||||||||| |||||||||||||||||||| |  ||||||| 
seq2  ATACGTATATACATACATTAGATATGTGAAAAGAATTTGGATTTATGGC-  1045

seq1  GAAGTTCCAATAATTCCCAAAATGATTTTAAACATCCACCTGTAATTTTG  1096
      |||||  |||||    ||||||||| ||| ||||| |||  |||| ||||
seq2  GAAGT--CAATA---TCCAAAATGA-TTTCAACAT-CACTGGTAA-TTTG  1087

seq1  TATTACTTACTTGTATA  1113
       ||||| ||| ||||||
seq2  GATTAC-TAC-TGTATA  1102

seq1: chr18_20367933_20368350
seq2: B6Ng01-005F09.g_71_488 (reverse)

seq1  TAAGGTGTAGATCATGGTAGAGTCTATAAGTCCCTGGGTATGGATGTAGG  50
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAAGATGTAGATCATAGTAGAGTCTATAAGTCCCTGGGTATGGATGTAGG  50

seq1  AGAGAGATGGATAGATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATGGATAGATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100

seq1  AGAGAGAGAGATCCTTAAAAGAAGCTCACTATGAATGGACTTTGGATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGATCCTTAAAAGAAGCTCACTATGAATGGACTTTGGATATT  150

seq1  AAGCAAATTAAATTGTGGCAAGTCTGGAGCTCACAGATCTCAGTAGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATTAAATTGTGGCAAGTCTGGAGCTCACAGATCTCAGTAGTCAT  200

seq1  CTCACTCTGAAATAGGCACTAGGGTACAAACCCCAGGCTTTATGCTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGAAATAGGCACTAGGGTACAAACCCCAGGCTTTATGCTTATG  250

seq1  CAGCAGGAATTTTAACCACTGGGCCATACTCCCAACACAAATGATCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAATTTTAACCACTGGGCCATACTCCCAACACAAATGATCTATA  300

seq1  TTTAAACCAATTTAAATGAGTAGGTCTACTGATTCCCCTTCACTATACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCAATTTAAATGAGTAGGTCTACTGATTCCCCTTCACTATACTC  350

seq1  CTTAAACTCCAGAATAGTTTCTAGATAGCATCAATTGTAATATCCCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTCCAGAATAGTTTCTAGATAGCATCAATTGTAATATCCCCTCC  400

seq1  AGCAGATGTTTGGAATTC  418
      ||||||||||||||||||
seq2  AGCAGATGTTTGGAATTC  418