BAC Information

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BAC

Clone NameB6Ng01-005K12
Chromosome18 (Build37)
Map Location 41,325,412 - 41,473,708
singlet/doubletdoublet
Overlap geneLOC677182
Upstream geneYipf5, Kctd16, EG225416
Downstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005K12.bB6Ng01-005K12.g
ACCDH842732DH842733
length1,1781,086
definitionDH842732|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K12, 5' end.DH842733|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,472,530 - 41,473,708)(41,325,412 - 41,326,493)
sequence
gaattcctgaccacagatttaatgagctaatgttttgtattaattcacta
agtttggggaattttctaatcaagggacaactactggccctctttggtaa
accttttaaaaagactatttcaaattgatatatatatataccaaaacata
cttatgccaaaaaaattaaagaagttaccaaaattggaaagtatgtgcct
tcttgttgtcacttacatattcgagttaatgttctttagaatttatagaa
gatggctgattaacattgaactgacttaggtcctaaattgattgagaagt
gagtctggaagagcccggttttgagtagtatgtgacaacttcaatttaac
ttataagtatttaactttgttttgacaaggatccgtaaggcttgaaaatc
tagagcttttttaacttgggcagtcaatatacagttattcttctctttgc
aataaatccatgaaaagtcaacctatacagtcttagggaggatggaggaa
gttaagtaatgagattaagacatgactgtggtacttgaactctttaaaag
actgtaggactggagaaatgactctgctgttactagtactccttatacag
aggaactgcctttagctcccagcacccatgctgggtggctcacaactact
tggaatttcagctgcagggaactcttctcacctctgaggcattttagcca
tgcacataatctcatactctgatacacacacacacacacacacacacaca
cacgtttaatatatactgtatatattatatgtattaagaataaaaatcat
ataaaatagataaaagtctgggtttgagcaaatatatctgtattaactcc
agaaaagacactgaatgtgggctgggccaatatagaaaacatccattcct
aggtatatgcagtgtatagagcttctgtgaacactcaaacacacttgtct
cattctcaattgttgggtagaacagtgaacagagttgtggtcctacaact
atacttgcagactagtgtccaagttacccaagaaatgtctgcactaggaa
acaatttctttatttggaacttcttaacaaattgggaaaaatagaattac
tatacttttctaccaaacaatggggctgtccattgtgggccaagactcag
tgggatacttaaggatagatatttctgc
gaattccactctctcacatgttttttttcttttagggacagttgtttttc
atatatattttcaatttttggttctggtcactgaaaaaagagtgacagta
atggacagtattagaagacagggtgggggatgaccaaaaaagtactatgg
cattgacttcagctgtagagatgaaagacaatactgacatctatgaaggt
ctcaccaggcacattttgaaatgtattgtttttttgagtatgattttcag
ctgttaaagattaattacagggaagatgatttgctgtcgatttagagatg
atgaacaagggaagaagttgtcaaatctagagcaatgtaataaggtgtgg
cacctgatatttgagatgagattcatgaatacagaaattgtgagaaaaaa
tatctagaggttttaggcatgccatttagtgttattatttaacctgagag
atgtaaattaatctaatgaacacattagttaaaattaatattaacagata
tataagtctcaagcagaattgtaatatcaacatttgagaactaaatattc
acataatatatagaagccaatgtatggactgatattccctaggaaggtgt
ggagagaagtgagcctgtggcatgtgacatcaacacagaactttggaaga
aaaagaggaatgagtgtagtggcaaaggtataaaatagctgaagagatta
gagattttaaagagtcaacttcacaacacattttatttttgctacatgtt
attatctattacttgatatgagaataaaatatatacaagtataattgacc
agaagtttgtggttctcaataatttgttagccttcgtgaaggatgataac
ccttttccttcatatttataaatggattattcatgttacttcaactatag
aaagaaaagtttgttctactcccagatgaaacaaagtatataagccccac
aaatgcatgggccaagttgaaaaacaatcattaaaagtgattgaaagctg
aatgagaagttgaaagtggtagtgacaccttgaaagagaaatcttattca
tgtgagaatgtttcccgaccatttatttaccaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_41472530_41473708
seq2: B6Ng01-005K12.b_46_1223 (reverse)

seq1  GCAGAAGTATC-ATCCTTAAGATAATCCACTTGAGTCCTTGGCCACAATG  49
      |||||| |||| ||||||||| ||  |||| |||||| | | ||||||||
seq2  GCAGAAATATCTATCCTTAAG-TATCCCAC-TGAGTCTTGGCCCACAATG  48

seq1  G-CAG-CCCACTGTTTGGTAGAAATGTAT-GTTATTCTATTTCT-CCAAT  95
      | ||| |||| ||||||||||||| |||| || ||||||||| | |||||
seq2  GACAGCCCCATTGTTTGGTAGAAAAGTATAGTAATTCTATTTTTCCCAAT  98

seq1  TTGTTAAGAAGTTCAAAATAAGAAAATTGTCTCCTAGTTGCAAGCATTTC  145
      |||||||||||||| ||||||  ||||||| |||||| ||||  ||||||
seq2  TTGTTAAGAAGTTCCAAATAAAGAAATTGTTTCCTAG-TGCAGACATTTC  147

seq1  TTTGGTTAACTTGGACACTAAGTCTGCAAGTTATAGTTGTAGGACCACAA  195
       |||| ||||||||||||| |||||||||| |||||||||||||||||||
seq2  -TTGGGTAACTTGGACACT-AGTCTGCAAG-TATAGTTGTAGGACCACAA  194

seq1  CTCTGTTCACTGTTCTACCCAACAATTGAGAATGAAGACAAGTGTGTTTG  245
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTGTTCACTGTTCTACCCAACAATTGAGAATG-AGACAAGTGTGTTTG  243

seq1  AGTGTTCACAGAAGCTCTATACACTGCATATACCTAGGAATGGATGTTTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCACAGAAGCTCTATACACTGCATATACCTAGGAATGGATGTTTT  293

seq1  CTATATTGGCCCAGCCCACATTCAGTGTCTTTTCTGGAGTTAATACAGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTGGCCCAGCCCACATTCAGTGTCTTTTCTGGAGTTAATACAGAT  343

seq1  ATATTTGCTCAAA-CCAGACTTTTATCTATTTTATATGATTTTTATTCTT  394
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTCAAACCCAGACTTTTATCTATTTTATATGATTTTTATTCTT  393

seq1  AATACATATAATATATACAGTATATATTAAACGTGTGTGTGTGTGTGTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATATAATATATACAGTATATATTAAACGTGTGTGTGTGTGTGTGT  443

seq1  GTGTGTGTGTGTATCAGAGTATGAGATTATGTGCATGGCTAAAATGCCTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTATCAGAGTATGAGATTATGTGCATGGCTAAAATGCCTC  493

seq1  AGAGGTGAGAAGAGTTCCCTGCAGCTGAAATTCCAAGTAGTTGTGAGCCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGAGAAGAGTTCCCTGCAGCTGAAATTCCAAGTAGTTGTGAGCCA  543

seq1  CCCAGCATGGGTGCTGGGAGCTAAAGGCAGTTCCTCTGTATAAGGAGTAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATGGGTGCTGGGAGCTAAAGGCAGTTCCTCTGTATAAGGAGTAC  593

seq1  TAGTAACAGCAGAGTCATTTCTCCAGTCCTACAGTCTTTTAAAGAGTTCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACAGCAGAGTCATTTCTCCAGTCCTACAGTCTTTTAAAGAGTTCA  643

seq1  AGTACCACAGTCATGTCTTAATCTCATTACTTAACTTCCTCCATCCTCCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCACAGTCATGTCTTAATCTCATTACTTAACTTCCTCCATCCTCCC  693

seq1  TAAGACTGTATAGGTTGACTTTTCATGGATTTATTGCAAAGAGAAGAATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTGTATAGGTTGACTTTTCATGGATTTATTGCAAAGAGAAGAATA  743

seq1  ACTGTATATTGACTGCCCAAGTTAAAAAAGCTCTAGATTTTCAAGCCTTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATATTGACTGCCCAAGTTAAAAAAGCTCTAGATTTTCAAGCCTTA  793

seq1  CGGATCCTTGTCAAAACAAAGTTAAATACTTATAAGTTAAATTGAAGTTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCCTTGTCAAAACAAAGTTAAATACTTATAAGTTAAATTGAAGTTG  843

seq1  TCACATACTACTCAAAACCGGGCTCTTCCAGACTCACTTCTCAATCAATT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACTACTCAAAACCGGGCTCTTCCAGACTCACTTCTCAATCAATT  893

seq1  TAGGACCTAAGTCAGTTCAATGTTAATCAGCCATCTTCTATAAATTCTAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTAAGTCAGTTCAATGTTAATCAGCCATCTTCTATAAATTCTAA  943

seq1  AGAACATTAACTCGAATATGTAAGTGACAACAAGAAGGCACATACTTTCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTAACTCGAATATGTAAGTGACAACAAGAAGGCACATACTTTCC  993

seq1  AATTTTGGTAACTTCTTTAATTTTTTTGGCATAAGTATGTTTTGGTATAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGTAACTTCTTTAATTTTTTTGGCATAAGTATGTTTTGGTATAT  1043

seq1  ATATATATCAATTTGAAATAGTCTTTTTAAAAGGTTTACCAAAGAGGGCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATCAATTTGAAATAGTCTTTTTAAAAGGTTTACCAAAGAGGGCC  1093

seq1  AGTAGTTGTCCCTTGATTAGAAAATTCCCCAAACTTAGTGAATTAATACA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTGTCCCTTGATTAGAAAATTCCCCAAACTTAGTGAATTAATACA  1143

seq1  AAACATTAGCTCATTAAATCTGTGGTCAGGAATTC  1179
      |||||||||||||||||||||||||||||||||||
seq2  AAACATTAGCTCATTAAATCTGTGGTCAGGAATTC  1178

seq1: chr18_41325412_41326493
seq2: B6Ng01-005K12.g_66_1151

seq1  GAATTCCACTCTCTCACATGTTTTTTTTCTTTTAGGGACAGTTGTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCTCTCACATGTTTTTTTTCTTTTAGGGACAGTTGTTTTTC  50

seq1  ATATATATTTTCAATTTTTGGTTCTGGTCACTGAAAAAAGAGTGACAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTTTCAATTTTTGGTTCTGGTCACTGAAAAAAGAGTGACAGTA  100

seq1  ATGGACAGTATTAGAAGACAGGGTGGGGGATGACCAAAAAAGTACTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGTATTAGAAGACAGGGTGGGGGATGACCAAAAAAGTACTATGG  150

seq1  CATTGACTTCAGCTGTAGAGATGAAAGACAATACTGACATCTATGAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACTTCAGCTGTAGAGATGAAAGACAATACTGACATCTATGAAGGT  200

seq1  CTCACCAGGCACATTTTGAAATGTATTGTTTTTTTGAGTATGATTTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGGCACATTTTGAAATGTATTGTTTTTTTGAGTATGATTTTCAG  250

seq1  CTGTTAAAGATTAATTACAGGGAAGATGATTTGCTGTCGATTTAGAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAAGATTAATTACAGGGAAGATGATTTGCTGTCGATTTAGAGATG  300

seq1  ATGAACAAGGGAAGAAGTTGTCAAATCTAGAGCAATGTAATAAGGTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAGGGAAGAAGTTGTCAAATCTAGAGCAATGTAATAAGGTGTGG  350

seq1  CACCTGATATTTGAGATGAGATTCATGAATACAGAAATTGTGAGAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATATTTGAGATGAGATTCATGAATACAGAAATTGTGAGAAAAAA  400

seq1  TATCTAGAGGTTTTAGGCATGCCATTTAGTGTTATTATTTAACCTGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGAGGTTTTAGGCATGCCATTTAGTGTTATTATTTAACCTGAGAG  450

seq1  ATGTAAATTAATCTAATGAACACATTAGTTAAAATTAATATTAACAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATTAATCTAATGAACACATTAGTTAAAATTAATATTAACAGATA  500

seq1  TATAAGTCTCAAGCAGAATTGTAATATCAACATTTGAGAACTAAATATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTCTCAAGCAGAATTGTAATATCAACATTTGAGAACTAAATATTC  550

seq1  ACATAATATATAGAAGCCAATGTATGGACTGATATTCCCTAGGAAGGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATATATAGAAGCCAATGTATGGACTGATATTCCCTAGGAAGGTGT  600

seq1  GGAGAGAAGTGAGCCTGTGGCATGTGACATCAACACAGAACTTTGGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGTGAGCCTGTGGCATGTGACATCAACACAGAACTTTGGAAGA  650

seq1  AAAAGAGGAATGAGTGTAGTGGCAAAGGTATAAAATAGCTGAAGAGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGAATGAGTGTAGTGGCAAAGGTATAAAATAGCTGAAGAGATTA  700

seq1  GAGATTTTAAAGAGTCAACTTCACAACACATTTTA-TTTTGCTACATGTT  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGATTTTAAAGAGTCAACTTCACAACACATTTTATTTTTGCTACATGTT  750

seq1  ATTATCTATTACTTGATATGAGAATAAAATATATACAAGTATAATTGACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTATTACTTGATATGAGAATAAAATATATACAAGTATAATTGACC  800

seq1  AGAAGTTTGTGGTTCTCAATAA-TTGTTAGCCTTCGTGAAGGATGATAAC  848
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGAAGTTTGTGGTTCTCAATAATTTGTTAGCCTTCGTGAAGGATGATAAC  850

seq1  CCTTTTCCTTCATATTTATAAATGGATTATTCATGTTACTTCAACTATAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCTTCATATTTATAAATGGATTATTCATGTTACTTCAACTATAG  900

seq1  AAAGAAAAGTTTGTTCTACTCCAAGATGAAACAAAGTATATAAG-CCCAC  947
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  AAAGAAAAGTTTGTTCTACTCCCAGATGAAACAAAGTATATAAGCCCCAC  950

seq1  AAATGCATGGGCCAAGTTGAAAAACAATCATTAAAAGTGATTGAGAGCTG  997
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAATGCATGGGCCAAGTTGAAAAACAATCATTAAAAGTGATTGAAAGCTG  1000

seq1  AATGAGGAGGTTGAAAGT-GTAGTGAACACCTGAAAGGAGAAATCTTATT  1046
      ||||| || ||||||||| |||||| ||||||  || |||||||||||||
seq2  AATGA-GAAGTTGAAAGTGGTAGTG-ACACCTTGAAAGAGAAATCTTATT  1048

seq1  CATGTGAG-ATGTTTCCAGACCATTTATTTA-CAAGGA  1082
      |||||||| |||||||| ||||||||||||| ||||||
seq2  CATGTGAGAATGTTTCCCGACCATTTATTTACCAAGGA  1086