BAC Information

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BAC

Clone NameB6Ng01-006D03
Chromosome18 (Build37)
Map Location 65,955,274 - 66,076,681
singlet/doubletdoublet
Overlap geneSec11c, Grp
Upstream geneNedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik
Downstream geneRax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852, Mc4r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006D03.bB6Ng01-006D03.g
ACCDH843123DH843124
length1,169928
definitionDH843123|Mus musculus domesticus DNA, BAC clone: B6Ng01-006D03, 5' end.DH843124|Mus musculus domesticus DNA, BAC clone: B6Ng01-006D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,955,274 - 65,956,442)(66,076,040 - 66,076,681)
sequence
gaattcttagcagatcgtttaatgcattaaggagagctaaacagctgtga
gtgagagttttttgtttttgtttttttttgagagttctttaagtaatttc
atttctgactatctcatctgagggggtcagggaattattaaaaaagggta
tgtggtgtcagcctatgtttgtggtgtttaaatgcacgtgcctatttccc
cacagaaaaaaaaggagaaataaataatattgtgtttcagtttaaaacca
tcaagtagcaagagggtatgtggtgcctgctacatggcagaaaactcaga
ggtgtgggttgctctgatgaaacactctgagagcaaacaggggaggaaag
gatgtatttggcttattttttcaggtcacaatccatcattggcagggtct
gaagcagaagtcacgaaggaattcttcttgctgacttacaggttaatgct
cagctggcttttacatacagccaggaccacctgtcaggaatggtgccacc
cacagtaggcagggccctccagcatcagttatccatcaggacaatctctc
acagacacaccaacagacaaacctgattctcttaaatttactattatttc
ttgagatttattttatttgtatgggtgttttgcctgcatatatgactatg
caccacagtgtgtgcctgatgcccatggaagccaggagagagcatcagat
tccctgacactggagttagagatggttgttcgccactatgtgctgggaac
tgaacccaggtcctctgtgaaagcagccagtgctttcaactattgagaca
tctcttttggcccagaaacttgattatctttgctgcctcaactgagactt
ttttcttccaggagattctaggttgtgttcggctgaggttgtcaaacagg
acaggtagagagaggagactgcccactggggtgccagtgtgactcaccaa
gaagtcagttgaggtactgataaaattcagtgcaggcagtctttgggatc
attatgccattgtaacttggcctggtgtgagcaggaacaagacttctggc
ctgccactggttctattacccacaggaacaaaaactaaaaatcctcttaa
aggagggatatcgcttctattctttgtctgtgggctggatcctggtgcag
ctagcaaagagaatgttcc
gaattctctgtccctgactctggttgcttgattacatttctttcatcata
ttatgctatgttattatttcttgtgtgttatgtatgtgtgtacatgcatg
tggagatcagaggacaacttgtggtagtatgttctctccttccaccttgt
gcgtcctggggatcaaactcagatcataggcttggaggcaagcgccttag
cctgctgagccctgttgccagcccttgatctagatttccatccctggact
cactcagcaccatgactgtttcatagtaagtttctaagtcgggaagtgta
agtcctgtgttcctttccagggtaatttctggaaagggttcctggaatcc
cacgtgtatagttagttcaggggtggcttgttggctggtacatctgggac
tctgtcccagcccaggctggctctccatgtggagatgagactaccgcctt
ccctgtgatccctgcacactcacttcctgtttcctatttattgaattctt
ctgtcaccaatgttcttaggttttgagagggtacattttgctctttgtta
gtttcttgctaagtcttttgtgcttcttgggatggtgttattgacagaac
tctccccttcatttctgtattggatttgcccattggaaatacagagaaaa
ttcagctgacttctgcatgctgaccttgtatcatgcaaccttgttggact
cagagtcgttctcaagttcaaagtggaaaaacacgcatggtcatttgtgg
aactccagaggaccctggcattggtagagttaggaggggaagctcagtgg
gcattgccagggaagcccagagggatgggtgtgatgggagtcacagaaac
taacagctgtgctctggactctgcttagcccatgggacagaagaacttgt
ttaattctcttttgttttttgacttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65955274_65956442
seq2: B6Ng01-006D03.b_48_1216

seq1  GAATTCTTAGCAGATCGTTTAATGCATTAAGGAGAGCTAAACAGCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCAGATCGTTTAATGCATTAAGGAGAGCTAAACAGCTGTGA  50

seq1  GTGAGAGTTTTTTGTTTTTGTTTTTTTTTGAGAGTTCTTTAAGTAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGTTTTTTGTTTTTGTTTTTTTTTGAGAGTTCTTTAAGTAATTTC  100

seq1  ATTTCTGACTATCTCATCTGAGGGGGTCAGGGAATTATTAAAAAAGGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGACTATCTCATCTGAGGGGGTCAGGGAATTATTAAAAAAGGGTA  150

seq1  TGTGGTGTCAGCCTATGTTTGTGGTGTTTAAATGCACGTGCCTATTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTCAGCCTATGTTTGTGGTGTTTAAATGCACGTGCCTATTTCCC  200

seq1  CACAGAAAAAAAAGGAGAAATAAATAATATTGTGTTTCAGTTTAAAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAAAAAAGGAGAAATAAATAATATTGTGTTTCAGTTTAAAACCA  250

seq1  TCAAGTAGCAAGAGGGTATGTGGTGCCTGCTACATGGCAGAAAACTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAGCAAGAGGGTATGTGGTGCCTGCTACATGGCAGAAAACTCAGA  300

seq1  GGTGTGGGTTGCTCTGATGAAACACTCTGAGAGCAAACAGGGGAGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGTTGCTCTGATGAAACACTCTGAGAGCAAACAGGGGAGGAAAG  350

seq1  GATGTATTTGGCTTATTTTTTCAGGTCACAATCCATCATTGGCAGGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATTTGGCTTATTTTTTCAGGTCACAATCCATCATTGGCAGGGTCT  400

seq1  GAAGCAGAAGTCACGAAGGAATTCTTCTTGCTGACTTACAGGTTAATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAAGTCACGAAGGAATTCTTCTTGCTGACTTACAGGTTAATGCT  450

seq1  CAGCTGGCTTTTACATACAGCCAGGACCACCTGTCAGGAATGGTGCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCTTTTACATACAGCCAGGACCACCTGTCAGGAATGGTGCCACC  500

seq1  CACAGTAGGCAGGGCCCTCCAGCATCAGTTATCCATCAGGACAATCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGGCAGGGCCCTCCAGCATCAGTTATCCATCAGGACAATCTCTC  550

seq1  ACAGACACACCAACAGACAAACCTGATTCTCTTAAATTTACTATTATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACACCAACAGACAAACCTGATTCTCTTAAATTTACTATTATTTC  600

seq1  TTGAGATTTATTTTATTTGTATGGGTGTTTTGCCTGCATATATGACTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTTATTTTATTTGTATGGGTGTTTTGCCTGCATATATGACTATG  650

seq1  CACCACAGTGTGTGCCTGATGCCCATGGAAGCCAGGAGAGAGCATCAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAGTGTGTGCCTGATGCCCATGGAAGCCAGGAGAGAGCATCAGAT  700

seq1  TCCCTGACACTGGAGTTAGAGATGGTTGTTCGCCACTATGTGCTGGGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGACACTGGAGTTAGAGATGGTTGTTCGCCACTATGTGCTGGGAAC  750

seq1  TGAACCCAGGTCCTCTGTGAAAGCAGCCAGTGCTTTCAACTATTGAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCAGGTCCTCTGTGAAAGCAGCCAGTGCTTTCAACTATTGAGACA  800

seq1  TCTCTTTTGGCCCAGAAACTTGATTATCTTTGCTGCCTCAACTGAGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTGGCCCAGAAACTTGATTATCTTTGCTGCCTCAACTGAGACTT  850

seq1  TTTTCTTCCAGGAGATTCTAGGTTGTGTTCGGCTGAGGTTGTCAAACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCAGGAGATTCTAGGTTGTGTTCGGCTGAGGTTGTCAAACAGG  900

seq1  ACAGGTAGAGAGAGGAGACTGCCCACTGGGGTGCCAGTGTGACTCACCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGAGAGAGGAGACTGCCCACTGGGGTGCCAGTGTGACTCACCAA  950

seq1  GAAGTCAGTTGAGGTACTGATAAAATTCAGTGCAGGCAGTCTGTGGAATC  1000
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  GAAGTCAGTTGAGGTACTGATAAAATTCAGTGCAGGCAGTCTTTGGGATC  1000

seq1  ATTATGCCATTGTAACTT-GCCTGGTGTGAGCAGGACACAGACTTCT-GC  1048
      |||||||||||||||||| |||||||||||||||||   |||||||| ||
seq2  ATTATGCCATTGTAACTTGGCCTGGTGTGAGCAGGAACAAGACTTCTGGC  1050

seq1  CTGCCACTGGTTCTAT--ACCACAGGAACAAAAACTAAACAAATTCTCTC  1096
      ||||||||||||||||   |||||||||||||||||||  ||||   |||
seq2  CTGCCACTGGTTCTATTACCCACAGGAACAAAAACTAA--AAAT--CCTC  1096

seq1  TAAAAGGAGAGGAATCGCTTTCATCCTTTTGCTGGTGGCTG--TACTGTG  1144
      | ||||||| |  |||||||  || ||||  |||  |||||  | |||  
seq2  TTAAAGGAGGGATATCGCTTCTATTCTTTGTCTGTGGGCTGGATCCTGGT  1146

seq1  CCAGCTAGCAAAGGAGAAATGTTCC  1169
       ||||||||||| ||| ||||||||
seq2  GCAGCTAGCAAA-GAG-AATGTTCC  1169

seq1: chr18_66076040_66076681
seq2: B6Ng01-006D03.g_361_995 (reverse)

seq1  GAAAATGTCAAAAAACAAAAGAGAAATTAAAACAAGTTCTTCTGTCCCAT  50
      ||||| |||||||||||||||||||  | |||||||||||||||||||||
seq2  GAAAA-GTCAAAAAACAAAAGAGAA--TTAAACAAGTTCTTCTGTCCCAT  47

seq1  GGGCCTAAGCAGAGTCCCAGAGCACAGCCTGTTTGGTTTCTGTGACTCCC  100
      ||| ||||||||||| ||||||||||| ||| || |||||||||||||||
seq2  GGG-CTAAGCAGAGT-CCAGAGCACAG-CTG-TTAGTTTCTGTGACTCCC  93

seq1  ATCACACCCATCCCTCTGGGCTTCCCTGGCAATGCCCACTGAGCTTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACCCATCCCTCTGGGCTTCCCTGGCAATGCCCACTGAGCTTCCCC  143

seq1  TCCTAACTCTACCAATGCCAGGGTCCTCTGGAGTTCCACAAATGACCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTCTACCAATGCCAGGGTCCTCTGGAGTTCCACAAATGACCATG  193

seq1  CGTGTTTTTCCACTTTGAACTTGAGAACGACTCTGAGTCCAACAAGGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTTTCCACTTTGAACTTGAGAACGACTCTGAGTCCAACAAGGTTG  243

seq1  CATGATACAAGGTCAGCATGCAGAAGTCAGCTGAATTTTCTCTGTATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATACAAGGTCAGCATGCAGAAGTCAGCTGAATTTTCTCTGTATTTC  293

seq1  CAATGGGCAAATCCAATACAGAAATGAAGGGGAGAGTTCTGTCAATAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGCAAATCCAATACAGAAATGAAGGGGAGAGTTCTGTCAATAACA  343

seq1  CCATCCCAAGAAGCACAAAAGACTTAGCAAGAAACTAACAAAGAGCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAAGAAGCACAAAAGACTTAGCAAGAAACTAACAAAGAGCAAAA  393

seq1  TGTACCCTCTCAAAACCTAAGAACATTGGTGACAGAAGAATTCAATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCTCTCAAAACCTAAGAACATTGGTGACAGAAGAATTCAATAAAT  443

seq1  AGGAAACAGGAAGTGAGTGTGCAGGGATCACAGGGAAGGCGGTAGTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAGGAAGTGAGTGTGCAGGGATCACAGGGAAGGCGGTAGTCTCA  493

seq1  TCTCCACATGGAGAGCCAGCCTGGGCTGGGACAGAGTCCCAGATGTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACATGGAGAGCCAGCCTGGGCTGGGACAGAGTCCCAGATGTACCA  543

seq1  GCCAACAAGCCACCCCTGAACTAACTATACACGTGGGATTCCAGGAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAAGCCACCCCTGAACTAACTATACACGTGGGATTCCAGGAACCC  593

seq1  TTTCCAGAAATTACCCTGGAAAGGAACACAGGACTTACACTT  642
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAAATTACCCTGGAAAGGAACACAGGACTTACACTT  635