BAC Information

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BAC

Clone NameB6Ng01-007N05
Chromosome18 (Build37)
Map Location 78,526,442 - 78,659,391
singlet/doubletdoublet
Overlap geneSlc14a2, EG620155
Upstream geneLoxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1
Downstream geneSetbp1, LOC100039242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007N05.bB6Ng01-007N05.g
ACCDH844280DH844281
length935657
definitionDH844280|Mus musculus domesticus DNA, BAC clone: B6Ng01-007N05, 5' end.DH844281|Mus musculus domesticus DNA, BAC clone: B6Ng01-007N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,658,461 - 78,659,391)(78,526,442 - 78,527,095)
sequence
gaattccataccaaccctcactatccacatgccccgctggatctactgtc
tcacagagtagctcaacctccaaattatccctggtttcgtggtattaaaa
tcctgaagagtttttagctgtgtgcaatgggggaaactatgaaatttgct
ttaagtgtattagttatgggtaagcccatgctgctttttaagaagtgtgg
tgccataagtagaacgtgtattggagaatgataacatcatggaaaaaaac
acatttctgttttggaatacagaaagataatcatgtgctttcagtttaat
ctctgaggcctgacatgggcttaccaatgatcccgattgggttccattgt
tggaaaacagacatagtgggcttacaacccaagtgagcaagagtgaggag
actggaagacataatttctaactagactgaaaaagaggagctcttggaga
gagccaggaaaattagaagcaaagaccagaacatggaggtgacaacaaac
ctaaggcaggagtttggtggcaatcttgggttgtttttgaacacttgaag
ggtttgtgacagctttgatggaggtttgatgaagactttgggaacatgcc
agatttcacgcactgtctccacccgaatccccaccgagtgtgttgtgact
tctgtttccacaagccccaagaatggatgctagggagccctaagtctgtc
tttactttttctaaatctcaaattataaatcccacacaatagtaaataat
gttcctggtggattttcaaatttgctttgagactaaatgaaatcatggac
atagtgtatccatagggtgctggaattactgtaatcattatattttcaat
atccatcagtggttacaaagaaaatcccagcgaaacagaatttcattcat
aatagaattctgtcaggtgtgatcctcattagaga
gaattctgagctatgagaagaacctgggaggttttacccactccatgaag
aaccaggaacattctttgttaaagtctttcaaagaaagtccttcaataca
ggcttgtctctgctcttacatctgatacgtgtttctttgcttttgtttgt
cttcattctgtttaacaaatatttccaggccatcacctctttccccagta
cagccttaggtgctggagatgcaggggtggacagttagagaatgcacagc
tgtgtagaaggaacaaccacttcaatagagctgtgttcagctagccctgt
ccacttcctttgaattcacttcaaaacaccaaggaaaatgcgaaccagaa
atgcagaacccacctttacggagggagtctgccaaaagcaatgcatttgt
aaccatagcctgtaggtgctggaagagctgccaaagacctcaaccaaagt
gggcagagctcagagtttgtgaaagagggcaaaatcaaactaagtctttg
caggggcggggggggggcagttgatctaatgtgagggggcagtctacaag
agcagtcctaggccttgttaagatggccccccaatgcaaaggcaaaggtt
tctgccatactgatgaccaaagacaacttgaaaatgaagcaaaccagggt
taaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_78658461_78659391
seq2: B6Ng01-007N05.b_45_979 (reverse)

seq1  TCTCTAATGAGGATCACACCTTACAAGAATTCTATTATG-ATGAAATTCT  49
      ||||||||||||||||||||| || |||||||||||||| ||||||||||
seq2  TCTCTAATGAGGATCACACCTGAC-AGAATTCTATTATGAATGAAATTCT  49

seq1  G-TTCGCTGGGATTTTCTTTGTAACCACTGATGGATATTGAAAATATAAT  98
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGCTGGGATTTTCTTTGTAACCACTGATGGATATTGAAAATATAAT  99

seq1  GATTACAGTAATTCCAGCACCCTATGGATACACTATGTCCATGGTTTCAT  148
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATTACAGTAATTCCAGCACCCTATGGATACACTATGTCCATGATTTCAT  149

seq1  TTAGTCTCAATGCAAATTTGAAAATCCACCAGGAACATTA-TTACTATTG  197
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  TTAGTCTCAAAGCAAATTTGAAAATCCACCAGGAACATTATTTACTATTG  199

seq1  TGT-GGATTTATAA-TTGAGATTTAGAAAAAGTAAAGACAGACTTAGGGC  245
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTGGGATTTATAATTTGAGATTTAGAAAAAGTAAAGACAGACTTAGGGC  249

seq1  TCCCTAGCATCCATTCTTGGGGCTTGTGGAAACAGAAGTCACAACACACT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGCATCCATTCTTGGGGCTTGTGGAAACAGAAGTCACAACACACT  299

seq1  CGGTGGGGATTCGGGTGGAGACAGTGCGTGAAATCTGGCATGTTCCCAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGGGATTCGGGTGGAGACAGTGCGTGAAATCTGGCATGTTCCCAAA  349

seq1  GTCTTCATCAAACCTCCATCAAAGCTGTCACAAACCCTTCAAGTGTTCAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATCAAACCTCCATCAAAGCTGTCACAAACCCTTCAAGTGTTCAA  399

seq1  AAACAACCCAAGATTGCCACCAAACTCCTGCCTTAGGTTTGTTGTCACCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCCAAGATTGCCACCAAACTCCTGCCTTAGGTTTGTTGTCACCT  449

seq1  CCATGTTCTGGTCTTTGCTTCTAATTTTCCTGGCTCTCTCCAAGAGCTCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCTGGTCTTTGCTTCTAATTTTCCTGGCTCTCTCCAAGAGCTCC  499

seq1  TCTTTTTCAGTCTAGTTAGAAATTATGTCTTCCAGTCTCCTCACTCTTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCAGTCTAGTTAGAAATTATGTCTTCCAGTCTCCTCACTCTTGC  549

seq1  TCACTTGGGTTGTAAGCCCACTATGTCTGTTTTCCAACAATGGAACCCAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGGGTTGTAAGCCCACTATGTCTGTTTTCCAACAATGGAACCCAA  599

seq1  TCGGGATCATTGGTAAGCCCATGTCAGGCCTCAGAGATTAAACTGAAAGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGATCATTGGTAAGCCCATGTCAGGCCTCAGAGATTAAACTGAAAGC  649

seq1  ACATGATTATCTTTCTGTATTCCAAAACAGAAATGTGTTTTTTTCCATGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTATCTTTCTGTATTCCAAAACAGAAATGTGTTTTTTTCCATGA  699

seq1  TGTTATCATTCTCCAATACACGTTCTACTTATGGCACCACACTTCTTAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCATTCTCCAATACACGTTCTACTTATGGCACCACACTTCTTAAA  749

seq1  AAGCAGCATGGGCTTACCCATAACTAATACACTTAAAGCAAATTTCATAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCATGGGCTTACCCATAACTAATACACTTAAAGCAAATTTCATAG  799

seq1  TTTCCCCCATTGCACACAGCTAAAAACTCTTCAGGATTTTAATACCACGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCATTGCACACAGCTAAAAACTCTTCAGGATTTTAATACCACGA  849

seq1  AACCAGGGATAATTTGGAGGTTGAGCTACTCTGTGAGACAGTAGATCCAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGATAATTTGGAGGTTGAGCTACTCTGTGAGACAGTAGATCCAG  899

seq1  CGGGGCATGTGGATAGTGAGGGTTGGTATGGAATTC  931
      ||||||||||||||||||||||||||||||||||||
seq2  CGGGGCATGTGGATAGTGAGGGTTGGTATGGAATTC  935

seq1: chr18_78526442_78527095
seq2: B6Ng01-007N05.g_70_726

seq1  GAATTCTGAGCTATGAGAAGAACCTGGGAGGTTTTACCCACTCCATGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCTATGAGAAGAACCTGGGAGGTTTTACCCACTCCATGAAG  50

seq1  AACCAGGAACATTCTTTGTTAAAGTCTTTCAAAGAAAGTCCTTCAATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGAACATTCTTTGTTAAAGTCTTTCAAAGAAAGTCCTTCAATACA  100

seq1  GGCTTGTCTCTGCTCTTACATCTGATACGTGTTTCTTTGCTTTTGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTCTCTGCTCTTACATCTGATACGTGTTTCTTTGCTTTTGTTTGT  150

seq1  CTTCATTCTGTTTAACAAATATTTCCAGGCCATCACCTCTTTCCCCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCTGTTTAACAAATATTTCCAGGCCATCACCTCTTTCCCCAGTA  200

seq1  CAGCCTTAGGTGCTGGAGATGCAGGGGTGGACAGTTAGAGAATGCACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTAGGTGCTGGAGATGCAGGGGTGGACAGTTAGAGAATGCACAGC  250

seq1  TGTGTAGAAGGAACAACCACTTCAATAGAGCTGTGTTCAGCTAGCCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGAAGGAACAACCACTTCAATAGAGCTGTGTTCAGCTAGCCCTGT  300

seq1  CCACTTCCTTTGAATTCACTTCAAAACACCAAGGAAAATGCGAACCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCTTTGAATTCACTTCAAAACACCAAGGAAAATGCGAACCAGAA  350

seq1  ATGCAGAACCCACCTTTACGGAGGGAGTCTGCCAAAAGCAATGCATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAACCCACCTTTACGGAGGGAGTCTGCCAAAAGCAATGCATTTGT  400

seq1  AACCATAGCCTGTAGGTGCTGGAAGAGCTGCCAAAGACCTCAACCAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAGCCTGTAGGTGCTGGAAGAGCTGCCAAAGACCTCAACCAAAGT  450

seq1  GGGCAGAGCTCAGAGTTTGTGAAAGAGGGCAAAATCAAACTAAGTCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGCTCAGAGTTTGTGAAAGAGGGCAAAATCAAACTAAGTCTTTG  500

seq1  CAGGGGCGGGGGGGGGGCAGTTGATCTAATGTGAGGGGGCAGTCTACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCGGGGGGGGGGCAGTTGATCTAATGTGAGGGGGCAGTCTACAAG  550

seq1  AGCAGTCCTAGGCCTTGTTAAGA-GGGCCCCCAATGCAAAGGCAAAGGTT  599
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  AGCAGTCCTAGGCCTTGTTAAGATGGCCCCCCAATGCAAAGGCAAAGGTT  600

seq1  TCTGCCACACTGATGACCAAAGACAACTTG-AAATGAAGCAAACCA-GGC  647
      ||||||| |||||||||||||||||||||| ||||||||||||||| || 
seq2  TCTGCCATACTGATGACCAAAGACAACTTGAAAATGAAGCAAACCAGGGT  650

seq1  TAAACTC  654
      |||||||
seq2  TAAACTC  657