BAC Information

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BAC

Clone NameB6Ng01-009D04
Chromosome18 (Build37)
Map Location 79,226,431 - 79,363,680
singlet/doubletdoublet
Overlap geneSetbp1
Upstream gene5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
Downstream geneLOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009D04.bB6Ng01-009D04.g
ACCDH845205DH845206
length1,208864
definitionDH845205|Mus musculus domesticus DNA, BAC clone: B6Ng01-009D04, 5' end.DH845206|Mus musculus domesticus DNA, BAC clone: B6Ng01-009D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,226,431 - 79,227,653)(79,363,118 - 79,363,680)
sequence
gaattctaagtacagaagggaaggctatgaaccatacaaagggttttata
taaattagtaatccattaaggacttctttctacacatgtatcacatgatc
atttttaatgaaatgaagtaagaatttaagctgaatgccgatttggattt
tgttgactccctatggttaggtgaatgaactagaagccctcctgcaccaa
gtcacgaatggctgctcctttcagaacacactagctccctcttaacatca
tatttgaaccagaacttgtttcctcgcatgtaacttatacagcccttagt
aactccagagctgtttcttggcttgtgtttattcctttgcagtttggtaa
ggcagatgttgcagttttgggaaagaagaaagcagaaatggcaatgaaaa
gagaaagaacaagaatagaagttagagatccatggaaaagaagctggaca
tcagtaacccagtgccctttctgtcactttgcaggaacagcccataagag
ggaactggctatttctgggagaagcccattccctttgatgagccttttat
attttctgcatttaaaacgtaggatgctctgaagcagatacagagttcca
cccatctcttgtcccaactctgccctctgaaactgcatgcaacagaaatt
ctccaccttgcaaaaagcatgcctttgtggatctaattgactgaatccaa
cgtttccttcatttttaaggatttcccatcattctgagggtataatagat
caattttcaaaaatctagtatttaggggtgattatgataaaattcactta
acataaaattgaccatcttaaccgtttaaatacatactttggtaccatta
actacatttacattgctatggaattaacaccactgtctagttataaaatc
tactacttcctcttgcaaaagggactctgtaccattacactgaaacatcc
catttttcaccatcttttagccacaggcatcattcagctgctgtctctta
gagatgcaggatctctcacaggaggataacatgcagccagtgcattttgt
gactatctcacttcttcacgggcataaatttcttgaacactggatcctta
gttagcttgagttagattacctgcctttttcaatctcgctatcttacaca
ttacatgcactgctacgatgtaaaccagggttctgtaatgtcggcttccc
tcatctga
gaattcattgccacaggaaaagactttctgggtagaacacacccttaaca
cagacacgatgatcaacaataataaagggacctcatgaaactaaaaggtt
cctacatagcaaaggacacgatcattaggacagcatggctgcctgcagaa
tgaggacttttctcaactgcacactcaatagagagttaatatccaaaata
cattaagaacttaaaaaaatctatgtatcaagaaataatgtgtgtgggcc
aggaaggggccaggaacctcacaggaagaccaacacagccaattaaactg
aacccttgggagctctcagagcctgagtcatcaaccaaatagcgtgccca
ggctggaccaaggcccctggtacatatatatcagatgtgcagctcagtct
acatggttgtctcccaaagactggagcagggactgtacctaaagctgttg
ctgcctgtctgtggaatccatttcccattaggactgccttatctgacttc
agtgggaaaggatgtgcctaaccctgaagagacttgatgtggcagagttg
gaagatacccaggggtccatcaccatctcaaaggagaaggggtaggggta
gggactctgtgatgtaaataaataaataaatagatcgatagatcgataga
tagatagatagatagatagatagatagatagatagatagatagatagata
gataaataaataaaaatactgtttgcatcaccaattttaaaaaaagaagc
agcatatttcgtatgtgggtgcttatctcccatgtcaccctcgacttctg
tcttctgtctcaaaatgtaaacatcacatgggataaatgacactgccagg
aaaaagttctctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_79226431_79227653
seq2: B6Ng01-009D04.b_46_1253

seq1  GAATTCTAAGTACAGAAGGGAAGGCTATGAACCATACAAAGGGTTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTACAGAAGGGAAGGCTATGAACCATACAAAGGGTTTTATA  50

seq1  TAAATTAGTAATCCATTAAGGACTTCTTTCTACACATGTATCACATGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAGTAATCCATTAAGGACTTCTTTCTACACATGTATCACATGATC  100

seq1  ATTTTTAATGAAATGAAGTAAGAATTTAAGCTGAATGCCGATTTGGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATGAAATGAAGTAAGAATTTAAGCTGAATGCCGATTTGGATTT  150

seq1  TGTTGACTCCCTATGGTTAGGTGAATGAACTAGAAGCCCTCCTGCACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTCCCTATGGTTAGGTGAATGAACTAGAAGCCCTCCTGCACCAA  200

seq1  GTCACGAATGGCTGCTCCTTTCAGAACACACTAGCTCCCTCTTAACATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGAATGGCTGCTCCTTTCAGAACACACTAGCTCCCTCTTAACATCA  250

seq1  TATTTGAACCAGAACTTGTTTCCTCGCATGTAACTTATACAGCCCTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAACCAGAACTTGTTTCCTCGCATGTAACTTATACAGCCCTTAGT  300

seq1  AACTCCAGAGCTGTTTCTTGGCTTGTGTTTATTCCTTTGCAGTTTGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGAGCTGTTTCTTGGCTTGTGTTTATTCCTTTGCAGTTTGGTAA  350

seq1  GGCAGATGTTGCAGTTTTGGGAAAGAAGAAAGCAGAAATGGCAATGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGTTGCAGTTTTGGGAAAGAAGAAAGCAGAAATGGCAATGAAAA  400

seq1  GAGAAAGAACAAGAATAGAAGTTAGAGATCCATGGAAAAGAAGCTGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAACAAGAATAGAAGTTAGAGATCCATGGAAAAGAAGCTGGACA  450

seq1  TCAGTAACCCAGTGCCCTTTCTGTCACTTTGCAGGAACAGCCCATAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAACCCAGTGCCCTTTCTGTCACTTTGCAGGAACAGCCCATAAGAG  500

seq1  GGAACTGGCTATTTCTGGGAGAAGCCCATTCCCTTTGATGAGCCTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGCTATTTCTGGGAGAAGCCCATTCCCTTTGATGAGCCTTTTAT  550

seq1  ATTTTCTGCATTTAAAACGTAGGATGCTCTGAAGCAGATACAGAGTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGCATTTAAAACGTAGGATGCTCTGAAGCAGATACAGAGTTCCA  600

seq1  CCCATCTCTTGTCCCAACTCTGCCCTCTGAAACTGCATGCAACAGAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCTTGTCCCAACTCTGCCCTCTGAAACTGCATGCAACAGAAATT  650

seq1  CTCCACCTTGCAAAAAGCATGCCTTTGTGGATCTAATTGACTGAATCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCTTGCAAAAAGCATGCCTTTGTGGATCTAATTGACTGAATCCAA  700

seq1  CGTTTCCTTCATTTTTAAGGATTTCCCATCATTCTGAGGGTATAATAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCTTCATTTTTAAGGATTTCCCATCATTCTGAGGGTATAATAGAT  750

seq1  CAATTTTCAAAAATCTAGTATTTAGGGGTGATTATGATAAAATTCACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCAAAAATCTAGTATTTAGGGGTGATTATGATAAAATTCACTTA  800

seq1  ACATAAAATTGACCATCTTAACCGTTTTAAATACATACTTTGGTACCATT  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACATAAAATTGACCATCTTAACCG-TTTAAATACATACTTTGGTACCATT  849

seq1  AACTACATTTACATTGCTATGGAATTAACACCACTGTCTAGTTATAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATTTACATTGCTATGGAATTAACACCACTGTCTAGTTATAAAAT  899

seq1  CTACTACTTCCTCTTGCAAAAGGGACTCTGTACCCATTACACTGAAACAT  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTACTACTTCCTCTTGCAAAAGGGACTCTGTA-CCATTACACTGAAACAT  948

seq1  CCCATTTTTCACCATCTTTTAGCCACAGGCACCATTCAGCTGCTGTCTC-  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  CCCATTTTTCACCATCTTTTAGCCACAGGCATCATTCAGCTGCTGTCTCT  998

seq1  TAGAGATGCAGGATCCCTCACAGGAGGATAACCATGCAGCAAGTGCATTT  1049
      ||||||||||||||| ||||||||||||||| |||||||| |||||||||
seq2  TAGAGATGCAGGATCTCTCACAGGAGGATAA-CATGCAGCCAGTGCATTT  1047

seq1  TGTGACTATCTCACTTCTTCACGGTGCATAAA-TTCCTGAACACTGATCC  1098
      |||||||||||||||||||||||| ||||||| ||| |||||||||   |
seq2  TGTGACTATCTCACTTCTTCACGG-GCATAAATTTCTTGAACACTGGATC  1096

seq1  CTTATGTAGCTTGAGTTAGAATTTACCTGC--TTTTCAATACTCAGCTAT  1146
      ||||  ||||||||||||||  ||||||||  |||||||| ||| |||||
seq2  CTTAGTTAGCTTGAGTTAGA--TTACCTGCCTTTTTCAAT-CTC-GCTAT  1142

seq1  CTTACACATTACCATTGCACTGCTACAGATGTAAAAACCAAGGTTCTGGA  1196
      ||||||||||||   ||||||||||| |||||  |||||| ||||||| |
seq2  CTTACACATTAC--ATGCACTGCTAC-GATGT--AAACCAGGGTTCTGTA  1187

seq1  ATGTGCAGAGCTTCCCCCCTCATCTGA  1223
      ||||     ||||   |||||||||||
seq2  ATGT---CGGCTT---CCCTCATCTGA  1208

seq1: chr18_79363118_79363680
seq2: B6Ng01-009D04.g_369_932 (reverse)

seq1  GAGAGAACTTTTTCCTGGCAGTGACATTTATCCC-TGTGATGTTTAACAT  49
      ||||||||||||||||||||||| |||||||||| |||||||||| ||||
seq2  GAGAGAACTTTTTCCTGGCAGTGTCATTTATCCCATGTGATGTTT-ACAT  49

seq1  TTTGAGACAGAAGACAGAAGTCGAGGGTGACATGGGAGATAAGCACCCAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGAAGACAGAAGTCGAGGGTGACATGGGAGATAAGCACCCAC  99

seq1  ATACGAAATATGCTGCTTCTTTTTTT-AAAGTGGTGATGCAAACAGTATT  148
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  ATACGAAATATGCTGCTTCTTTTTTTAAAATTGGTGATGCAAACAGTATT  149

seq1  TTTATTTATTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  199

seq1  TATCTATCTATCTATCTATCGATCTATCGATCTATTTATTTATTTATTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCGATCTATCGATCTATTTATTTATTTATTTA  249

seq1  CATCACAGAGTCCCTACCCCTACCCCTTCTCCTTTGAGATGGTGATGGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGAGTCCCTACCCCTACCCCTTCTCCTTTGAGATGGTGATGGAC  299

seq1  CCCTGGGTATCTTCCAACTCTGCCACATCAAGTCTCTTCAGGGTTAGGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGTATCTTCCAACTCTGCCACATCAAGTCTCTTCAGGGTTAGGCA  349

seq1  CATCCTTTCCCACTGAAGTCAGATAAGGCAGTCCTAATGGGAAATGGATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTCCCACTGAAGTCAGATAAGGCAGTCCTAATGGGAAATGGATT  399

seq1  CCACAGACAGGCAGCAACAGCTTTAGGTACAGTCCCTGCTCCAGTCTTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACAGGCAGCAACAGCTTTAGGTACAGTCCCTGCTCCAGTCTTTG  449

seq1  GGAGACAACCATGTAGACTGAGCTGCACATCTGATATATATGTACCAGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAACCATGTAGACTGAGCTGCACATCTGATATATATGTACCAGGG  499

seq1  GCCTTGGTCCAGCCTGGGCACGCTATTTGGTTGATGACTCAGGCTCTGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTCCAGCCTGGGCACGCTATTTGGTTGATGACTCAGGCTCTGAG  549

seq1  AGCTCCCAAGGGTTC  563
      |||||||||||||||
seq2  AGCTCCCAAGGGTTC  564