BAC Information

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BAC

Clone NameB6Ng01-009N02
Chromosome18 (Build37)
Map Location 44,275,607 - 44,460,422
singlet/doubletdoublet
Overlap geneLOC100042855, 9530002K18Rik, Spink11, Npy6r
Upstream geneLOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12
Downstream geneMyot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009N02.bB6Ng01-009N02.g
ACCDH845657DH845658
length3091,124
definitionDH845657|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N02, 5' end.DH845658|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,460,114 - 44,460,422)(44,275,607 - 44,276,729)
sequence
aactatcagagatccagatgttccagaaaaccaaagagcaactaatattg
cttttgttattccttcaacctcagatattagaaaaaacatttcagatagt
attaggacttgaattgatcccaattattggatatttctcaaaagggttac
aacaaccatgactctctagatgagaattggatcacaagaatgactagact
aataatggtagtgctcagggagactgataaaaacgatctcagagatctgg
agatctggagtggaagaggctagagtagggccaatgtgcttattgggggg
ggggtgggg
gaattcatcccttctcttccccaggtatgtctcaccattttcatcctagg
agaggataatctgatagacgcatattaaagtttggatatttataggagtt
ggcatataaagctcaaattcaagaaacaccttcgtttgtgaaagtttagt
gtgtaatttttcaagacagtaacagtgtttagcaaaaagggtggggagat
tttcaaatatataacatggtggtggtgagcatggcttatttagaaaggag
ctccagaagagtacacttttaagctgcccaacagccaagtgtgaatctat
tggctccgttatgggaggcttaatgtttcttccgttcatgttcctggttg
tgttctcaggtaagaaagctgcagctgacaactttctttccagacagaat
ttctttttcgacagaatttgtgaatgaggagttgatgctgtatcagaatc
aaaagtaatttcagaaacatagatatatatgtataaaatggtcactggat
gtaacaacagtggaagacttgtggttggaggaagcaagaataaggggttg
agaaaggcttagaatacaaagatagtgtcagcctaaaaatattataagag
aacataaatgtttacattcatgtcccataaaacgatggtgctatgttatg
ataaaatggcatatgagcaaattttaaaaatgtattttaataatgaattt
ttatatttctctaacatgcttaaggtgtttaagtctcttatagaatagaa
ataactatactttccttttacttaaggtattatagagatgattacaacag
ttgcccttatttgatctcttgtaggtgtctgatactagtattttgtattc
catattttaacatagttgttttcaaatataagctctagcacagatatatt
aatttctcaaacaatgagaaaattttagtatcttaatacatttatcttaa
tatgatatttcaatatataattacgaaatgatcatatgtactaagtttaa
aaagaactggtggtgagtatagttttatgctttagcatgtatgtgccctc
agactccggtctccagaactggaaatggaataaacttaccttccaaacat
gcaaagtttggaatgaccttctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44460114_44460422
seq2: B6Ng01-009N02.b_54_362 (reverse)

seq1  CCCCACCCCCCCCCCAATAAGCACATTGGCCCTACTCTAGCCTCTTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCCCCCCAATAAGCACATTGGCCCTACTCTAGCCTCTTCCAC  50

seq1  TCCAGATCTCCAGATCTCTGAGATCGTTTTTATCAGTCTCCCTGAGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATCTCCAGATCTCTGAGATCGTTTTTATCAGTCTCCCTGAGCACT  100

seq1  ACCATTATTAGTCTAGTCATTCTTGTGATCCAATTCTCATCTAGAGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTATTAGTCTAGTCATTCTTGTGATCCAATTCTCATCTAGAGAGTC  150

seq1  ATGGTTGTTGTAACCCTTTTGAGAAATATCCAATAATTGGGATCAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTTGTAACCCTTTTGAGAAATATCCAATAATTGGGATCAATTCA  200

seq1  AGTCCTAATACTATCTGAAATGTTTTTTCTAATATCTGAGGTTGAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAATACTATCTGAAATGTTTTTTCTAATATCTGAGGTTGAAGGAA  250

seq1  TAACAAAAGCAATATTAGTTGCTCTTTGGTTTTCTGGAACATCTGGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAAGCAATATTAGTTGCTCTTTGGTTTTCTGGAACATCTGGATCT  300

seq1  CTGATAGTT  309
      |||||||||
seq2  CTGATAGTT  309

seq1: chr18_44275607_44276729
seq2: B6Ng01-009N02.g_68_1191

seq1  GAATTCATCCCTTCTCTTCCCCAGGTATGTCTCACCATTTTCATCCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCTTCTCTTCCCCAGGTATGTCTCACCATTTTCATCCTAGG  50

seq1  AGAGGATAATCTGATAGACGCATATTAAAGTTTGGATATTTATAGGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATAATCTGATAGACGCATATTAAAGTTTGGATATTTATAGGAGTT  100

seq1  GGCATATAAAGCTCAAATTCAAGAAACACCTTCGTTTGTGAAAGTTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATAAAGCTCAAATTCAAGAAACACCTTCGTTTGTGAAAGTTTAGT  150

seq1  GTGTAATTTTTCAAGACAGTAACAGTGTTTAGCAAAAAGGGTGGGGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTTTTCAAGACAGTAACAGTGTTTAGCAAAAAGGGTGGGGAGAT  200

seq1  TTTCAAATATATAACATGGTGGTGGTGAGCATGGCTTATTTAGAAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATATATAACATGGTGGTGGTGAGCATGGCTTATTTAGAAAGGAG  250

seq1  CTCCAGAAGAGTACACTTTTAAGCTGCCCAACAGCCAAGTGTGAATCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAAGAGTACACTTTTAAGCTGCCCAACAGCCAAGTGTGAATCTAT  300

seq1  TGGCTCCGTTATGGGAGGCTTAATGTTTCTTCCGTTCATGTTCCTGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCGTTATGGGAGGCTTAATGTTTCTTCCGTTCATGTTCCTGGTTG  350

seq1  TGTTCTCAGGTAAGAAAGCTGCAGCTGACAACTTTCTTTCCAGACAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCAGGTAAGAAAGCTGCAGCTGACAACTTTCTTTCCAGACAGAAT  400

seq1  TTCTTTTTCGACAGAATTTGTGAATGAGGAGTTGATGCTGTATCAGAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCGACAGAATTTGTGAATGAGGAGTTGATGCTGTATCAGAATC  450

seq1  AAAAGTAATTTCAGAAACATAGATATATATGTATAAAATGGTCACTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAATTTCAGAAACATAGATATATATGTATAAAATGGTCACTGGAT  500

seq1  GTAACAACAGTGGAAGACTTGTGGTTGGAGGAAGCAAGAATAAGGGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAACAGTGGAAGACTTGTGGTTGGAGGAAGCAAGAATAAGGGGTTG  550

seq1  AGAAAGGCTTAGAATACAAAGATAGTGTCAGCCTAAAAATATTATAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCTTAGAATACAAAGATAGTGTCAGCCTAAAAATATTATAAGAG  600

seq1  AACATAAATGTTTACATTCATGTCCCATAAAACGATGGTGCTATGTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAATGTTTACATTCATGTCCCATAAAACGATGGTGCTATGTTATG  650

seq1  ATAAAATGGCATATGAGCAAATTTTAAAAATGTATTTTAATAATGAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGGCATATGAGCAAATTTTAAAAATGTATTTTAATAATGAATTT  700

seq1  TTATATTTCTCTAACATGCTTAAGGTGTTTAAGTCTCTTATAGAATAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTCTCTAACATGCTTAAGGTGTTTAAGTCTCTTATAGAATAGAA  750

seq1  ATAACTATACTTTCCTTTTACTTAAGGTATTATAGAGATGATTACAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTATACTTTCCTTTTACTTAAGGTATTATAGAGATGATTACAACAG  800

seq1  TTGCCCTTATTTGATCTCTTTGTAGGTGTCTGATACTAGTATTTTGTATT  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGCCCTTATTTGATCTC-TTGTAGGTGTCTGATACTAGTATTTTGTATT  849

seq1  CCATATTTTAACATAGTTGTTTTCAAATATAAGCTCTAGCACAGATATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTTAACATAGTTGTTTTCAAATATAAGCTCTAGCACAGATATAT  899

seq1  TAATTTCTCAAACAATGAGAAAATTTTAGTATCTTAATACATTTATCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTCAAACAATGAGAAAATTTTAGTATCTTAATACATTTATCTTA  949

seq1  ATATGATATTTCAATATAT-ATTAAGATAATGATCATAATGTACTAAGTT  999
      ||||||||||||||||||| |||| || ||||||||| ||||||||||||
seq2  ATATGATATTTCAATATATAATTACGA-AATGATCAT-ATGTACTAAGTT  997

seq1  TAAAAAGAACT-GTGTTGAGTAATAGTTTTCATGC-TTAGCATGTATGTG  1047
      ||||||||||| ||| ||||| |||||||| |||| ||||||||||||||
seq2  TAAAAAGAACTGGTGGTGAGT-ATAGTTTT-ATGCTTTAGCATGTATGTG  1045

seq1  -CCTCAGAATTCAGTCTCCAGAACTGGGAAATGATAT-AACTTA-CTCGC  1094
       ||||||| | | |||||||||||| |||||||  || |||||| ||  |
seq2  CCCTCAGACTCCGGTCTCCAGAACT-GGAAATGGAATAAACTTACCTTCC  1094

seq1  AAAC-TGCAAAGTTTGG-ATGACCTTTCTTA  1123
      |||| |||||||||||| |||||| ||||||
seq2  AAACATGCAAAGTTTGGAATGACC-TTCTTA  1124