BAC Information

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BAC

Clone NameB6Ng01-009O06
Chromosome18 (Build37)
Map Location 57,898,452 - 58,100,846
singlet/doubletdoublet
Overlap geneSlc12a2, 9330166H04Rik
Upstream geneLmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik
Downstream geneFbn2, Slc27a6, Isoc1, Adamts19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009O06.bB6Ng01-009O06.g
ACCDH845713DH845714
length1,146732
definitionDH845713|Mus musculus domesticus DNA, BAC clone: B6Ng01-009O06, 5' end.DH845714|Mus musculus domesticus DNA, BAC clone: B6Ng01-009O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,099,692 - 58,100,846)(57,898,452 - 57,899,182)
sequence
gaattctatgtaagattaatgaaaaggacacagaagtgaagaatatacct
tagtcttataaagctcaagctcattatctgtgattcgccaaggctcatct
tctttcatcttatctgcaatgtcctgttctttatcatcttcgtgaagtct
gtacggctcgatcatgtcatcaaaagcaataatactttaaagagtagaga
gaataccaacaaacttattttgaattacatatcaagaacagcttaaatag
taaacaatgacgtgtaacaatctttataatttaggtaaaaagcggtaatt
cccaagctctcacactaggcggacttagctcttgcctgtgtcagcccctc
aactaaacagtgctgcgttagccaaagtgatgcctcagattgacacatca
agtacaactctgctcatagcaaatcatctccaagtcaatggaaaacataa
ttcttatcccagctctgtaacttattcaacatatgcctaaaactaattac
aattatatctaatcaaatatgcacagacagaaactgcctctttgtgccat
ttttcaggaagacaatcccaggagtagaaactttgaataaaagactcttg
acaacaacggttatagggaaatgctcagattttcacagtaaaagtaaaca
agggacgtgatcgtatggaagctgcgatcctatgaaatgctttcattgac
tgtgggcaggaaatatcggaagtttaaacctatctggagcttctgtgcac
taacactcttcagaacgcatgtaaagaagtgaaatcccccctgaacacga
agaattcctaaaagcttgctccggtaccactggccagccagttagtagta
catcatttaatttaactcagggcagagaaaagcgcaggtaaccattttaa
gtcagcttatctgcatctgaccaggcgactggaattggaatgcatagaga
atattatccagcaactacttttcttttttggcttggtgttgaaatctcca
ggaccatgatatcagagagtctattccgaatttactcaataagtagtcat
tcctatgacagaagaacggaattcagacatggtagatgtctccaagcatt
ccttacgtcctcacacatgtgtagatgacttagcaggaagtctatc
gaattcaataggaggaagaggaacagagaacatttctctgaaaggaacat
gagccaggaatgcatttcctctgttcattgctgcatcttgtcatggcctt
aggatgtggaaggggtgtgtaaggaaccatccccatgggataccatacag
ggtagattttgaggccagagacatcagactctgctgaagtcccatatgct
tgcttggcttggatgtagccagcaacagaccttataaagatcacaatgcc
tgggaggagagggggtttagcatcatcgctcgacagaagatgtatgaggc
caggcagttgaagaccctggatgactgaagttcttacctccctggtagga
ctgaagccaagcatcagtactcaaaagccttaaaaattaaagataaaaaa
agaaagaaagaaagaaagaaggaaggaaggaaggaaggaaggaaggaagg
gaagaaaaaaaaaagaatctatacagagttgacttttctcaccaaaattc
acatgagccatactattaaaactctcccattcaaaatgtaacttgaaaaa
aaaatgtaacttgaaaagagaccacatctttacctaaacaattctgtaga
atccatccttccagagttctactccaagggatgtttgtgagacccagtca
atatcatgttttatttcacaaatccatcatattggtggggtaaagaactt
agtccaggatactttctttgaacccctgtagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58099692_58100846
seq2: B6Ng01-009O06.b_47_1192 (reverse)

seq1  GATAGACTTTCCCTCTAAGTCATCTTACCACATGTGT-AGGGCGT-AGGG  48
      ||||||| ||||  |||||||||||   ||||||||| ||| ||| ||| 
seq2  GATAGAC-TTCCTGCTAAGTCATCT--ACACATGTGTGAGGACGTAAGGA  47

seq1  ATGCTTGTGAACATCCTTACCATGTCTG-ATTCTGTTCTTCTTGTCATAG  97
      |||||||   |||||  ||||||||||| |||| ||||||| ||||||||
seq2  ATGCTTGGAGACATC--TACCATGTCTGAATTCCGTTCTTC-TGTCATAG  94

seq1  G-ATGGCTACTTTATTGAGTAAATTCCGGATAGACTTCTCTGATATCATG  146
      | ||| |||| ||||||||||||||| | |||||| ||||||||||||||
seq2  GAATGACTAC-TTATTGAGTAAATTCGGAATAGAC-TCTCTGATATCATG  142

seq1  GTCCTTGGAGATATCAACACCAAGCCAAAAAAAGAAAAGTAAGTTGCTGG  196
      |||| ||||||| ||||||||||||| ||||||||||||| |||||||||
seq2  GTCC-TGGAGATTTCAACACCAAGCC-AAAAAAGAAAAGT-AGTTGCTGG  189

seq1  ATAATTATTCTCTATGCATTTCCAATTCCAGTCGCCTGGTCAGATGCAGA  246
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATAA-TATTCTCTATGCA-TTCCAATTCCAGTCGCCTGGTCAGATGCAGA  237

seq1  TAAGCTGACTTGAAATGGTTACCTGCGCTTTTCTCTGCCCTGAGTTAAAT  296
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGACTTAAAATGGTTACCTGCGCTTTTCTCTGCCCTGAGTTAAAT  287

seq1  TAAATGATGTACTACTAACTGGCTGGCCAGTGGTACCGGAGCAAGCTTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATGTACTACTAACTGGCTGGCCAGTGGTACCGGAGCAAGCTTTT  337

seq1  AGGAATTCTTCGTGTTCAGGGGGGATTTCACTTCTTTACATGCGTTCTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTCTTCGTGTTCAGGGGGGATTTCACTTCTTTACATGCGTTCTGA  387

seq1  AGAGTGTTAGTGCACAGAAGCTCCAGATAGGTTTAAACTTCCGATATTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTAGTGCACAGAAGCTCCAGATAGGTTTAAACTTCCGATATTTC  437

seq1  CTGCCCACAGTCAATGAAAGCATTTCATAGGATCGCAGCTTCCATACGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACAGTCAATGAAAGCATTTCATAGGATCGCAGCTTCCATACGAT  487

seq1  CACGTCCCTTGTTTACTTTTACTGTGAAAATCTGAGCATTTCCCTATAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCCCTTGTTTACTTTTACTGTGAAAATCTGAGCATTTCCCTATAAC  537

seq1  CGTTGTTGTCAAGAGTCTTTTATTCAAAGTTTCTACTCCTGGGATTGTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTTGTCAAGAGTCTTTTATTCAAAGTTTCTACTCCTGGGATTGTCT  587

seq1  TCCTGAAAAATGGCACAAAGAGGCAGTTTCTGTCTGTGCATATTTGATTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAAAATGGCACAAAGAGGCAGTTTCTGTCTGTGCATATTTGATTA  637

seq1  GATATAATTGTAATTAGTTTTAGGCATATGTTGAATAAGTTACAGAGCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATTGTAATTAGTTTTAGGCATATGTTGAATAAGTTACAGAGCTG  687

seq1  GGATAAGAATTATGTTTTCCATTGACTTGGAGATGATTTGCTATGAGCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGAATTATGTTTTCCATTGACTTGGAGATGATTTGCTATGAGCAG  737

seq1  AGTTGTACTTGATGTGTCAATCTGAGGCATCACTTTGGCTAACGCAGCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTACTTGATGTGTCAATCTGAGGCATCACTTTGGCTAACGCAGCAC  787

seq1  TGTTTAGTTGAGGGGCTGACACAGGCAAGAGCTAAGTCCGCCTAGTGTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGTTGAGGGGCTGACACAGGCAAGAGCTAAGTCCGCCTAGTGTGA  837

seq1  GAGCTTGGGAATTACCGCTTTTTACCTAAATTATAAAGATTGTTACACGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGGGAATTACCGCTTTTTACCTAAATTATAAAGATTGTTACACGT  887

seq1  CATTGTTTACTATTTAAGCTGTTCTTGATATGTAATTCAAAATAAGTTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTACTATTTAAGCTGTTCTTGATATGTAATTCAAAATAAGTTTG  937

seq1  TTGGTATTCTCTCTACTCTTTAAAGTATTATTGCTTTTGATGACATGATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATTCTCTCTACTCTTTAAAGTATTATTGCTTTTGATGACATGATC  987

seq1  GAGCCGTACAGACTTCACGAAGATGATAAAGAACAGGACATTGCAGATAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGTACAGACTTCACGAAGATGATAAAGAACAGGACATTGCAGATAA  1037

seq1  GATGAAAGAAGATGAGCCTTGGCGAATCACAGATAATGAGCTTGAGCTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAGAAGATGAGCCTTGGCGAATCACAGATAATGAGCTTGAGCTTT  1087

seq1  ATAAGACTAAGGTATATTCTTCACTTCTGTGTCCTTTTCATTAATCTTAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTAAGGTATATTCTTCACTTCTGTGTCCTTTTCATTAATCTTAC  1137

seq1  ATAGAATTC  1155
      |||||||||
seq2  ATAGAATTC  1146

seq1: chr18_57898452_57899182
seq2: B6Ng01-009O06.g_67_798

seq1  GAATTCAATAGGAGGAAGAGGAACAGAGAACATTTCTCTGAAAGGAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGGAGGAAGAGGAACAGAGAACATTTCTCTGAAAGGAACAT  50

seq1  GAGCCAGGAATGCATTTCCTCTGTTCATTGCTGCATCTTGTCATGGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGAATGCATTTCCTCTGTTCATTGCTGCATCTTGTCATGGCCTT  100

seq1  AGGATGTGGAAGGGGTGTGTAAGGAACCATCCCCATGGGATACCATACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGGAAGGGGTGTGTAAGGAACCATCCCCATGGGATACCATACAG  150

seq1  GGTAGATTTTGAGGCCAGAGACATCAGACTCTGCTGAAGTCCCATATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATTTTGAGGCCAGAGACATCAGACTCTGCTGAAGTCCCATATGCT  200

seq1  TGCTTGGCTTGGATGTAGCCAGCAACAGACCTTATAAAGATCACAATGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCTTGGATGTAGCCAGCAACAGACCTTATAAAGATCACAATGCC  250

seq1  TGGGAGGAGAGGGGGTTTAGCATCATCGCTCGACAGAAGATGTATGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAGAGGGGGTTTAGCATCATCGCTCGACAGAAGATGTATGAGGC  300

seq1  CAGGCAGTTGAAGACCCTGGATGACTGAAGTTCTTACCTCCCTGGTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTTGAAGACCCTGGATGACTGAAGTTCTTACCTCCCTGGTAGGA  350

seq1  CTGAAGCCAAGCATCAGTACTCAAAAGCCTTAAAAATTAAAGATAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCAAGCATCAGTACTCAAAAGCCTTAAAAATTAAAGATAAAAAA  400

seq1  AGAAAGAAAGAAAGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  450

seq1  GAAGAAAAAAAAAAGAATCTATACAGAGTTGACTTTTCTCACCAAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAAAAAAAGAATCTATACAGAGTTGACTTTTCTCACCAAAATTC  500

seq1  ACATGAGCCATACTATTAAAACTCTCCCATTCAAAATGTAACTTGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGCCATACTATTAAAACTCTCCCATTCAAAATGTAACTTGAAAAA  550

seq1  AAAATGTAACTTGAAAAGAGACCACATCTTTACCTAAACAATTCTGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAACTTGAAAAGAGACCACATCTTTACCTAAACAATTCTGTAGA  600

seq1  ATCCATCCTTCCAGAGTTCTACTCCAAGGGATGTTTGTGAGACCCAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCCATCCTTCCAGAGTTCTACTCCAAGGGATGTTTGTGAGACCCAGTC-  649

seq1  AATATCATGTTTTATTTCACAAATCCATCATATTGGT-GGGTAAAGAACT  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATATCATGTTTTATTTCACAAATCCATCATATTGGTGGGGTAAAGAACT  699

seq1  TAGTCCAGGATACTTTCTTTGAA-CCCTGTAGC  731
      ||||||||||||||||||||||| |||||||||
seq2  TAGTCCAGGATACTTTCTTTGAACCCCTGTAGC  732