BAC Information

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BAC

Clone NameB6Ng01-010D16
ChromosomeX (Build37)18 (Build37)
Map Location 140,136,081 - 140,136,23531,346,815 - 31,347,329
singlet/doubletsingletsinglet
Overlap genePak3
Upstream geneTmem164, Ammecr1, Rgag1, LOC209541, Chrdl1
Downstream geneCapn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010D16.bB6Ng01-010D16.g
ACCDH845957DH845958
length955509
definitionDH845957|Mus musculus domesticus DNA, BAC clone: B6Ng01-010D16, 5' end.DH845958|Mus musculus domesticus DNA, BAC clone: B6Ng01-010D16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,136,081 - 140,136,235)(31,346,815 - 31,347,329)
sequence
gaattctcttccacagatagcgctcagccatcttcactattgctctattc
acaagagctagaaaatggaaacagcctaaatgtcctttatccaaaaccgg
gagtacttccttttacacaaagaatcactgttcattgacatagagaatga
atcatgaacttggtaggcaaatgcattaaacaggaaaagattatactgag
tgaggtaacctaataggcataatattttctttcatgggagattcctaatt
cccaatattcaggggtgagcaaataaagaagatggagtaactaaagaaac
cagagactataccacccggggatccatcccataatcagccaccaaaccca
gacactattgcatatgccagaaagattttgctgaagggaccctggtatag
ctgtcttgtataatgcctgacaaatacagaagtggatgctcacagtcatc
tataagatggaacacagggcccccaatggagaagctagaaaaagcaccca
aggagctgaaagagtctgcaaccctataggtggaataacaatttgaacta
accagtacccccagagctagtgcctctagttgcatatgtagcagaagatg
gcctagtcggccatcactgggaagagaggccccttggtattgcaaacttt
atatgccccagtacagggaaacgccagggccaagaagtgggagtgggtca
gtaagggagtagggcaggtgaagggtttagggaactttcgggatagcatt
tgaaatgtatataaagaaaataccaaaaaaaaaaaaaaaatcgaaagtct
cttccagtagggaaggtccaggtcaccttgggcgcagagtctgcagacaa
ccccaaggtccctagaggactctccatgtgatcttaggacactggtgagt
gacacaacttctgtccattgcattgcacgggcctgagacagcataggaac
agaaa
ttgtgaggctatgctagtacctggcaaatacagaagtgaatgctcacagt
catctattggatggaacagggtccccaatgaaggagctagagaaagtacc
caaggaactgaaggggtctgcagccctataggaggaacaacaatatgaac
taatcagtaccccccagagcttgtgtctctagctgcatatgtagcagagg
atggcctagtctgccatcaatgggtacagaggcccttggtcttgcaaaga
ttatattccccagtacaggggattgccagggccaggaagcaggagtgggt
gggttggggagcagggccaggggagggtatagggaactttcggagaggaa
actaggaaaagggatagcatttgaaatgtaaatgaagaaaatatctaata
aaaattaacattaaaaaagaaatataaatcttgctatatttcttttgtgc
atgttttgtttgtttactttgtgtgggtgagtgagcacatgtaggtgtgt
gtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_140136081_140136235
seq2: B6Ng01-010D16.b_638_793

seq1  AAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCA  50
      |||||||||||||||||||||||||| ||||||||||| ||||    |||
seq2  AAGATGGCCTAGTCGGCCATCACTGGGAAGAGAGGCCCCTTGGTATTGCA  50

seq1  AACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAAAATGGGA  100
      |||||||||||||||||||||||| ||||||||||||  || || |||||
seq2  AACTTTATATGCCCCAGTACAGGGAAACGCCAGGGCC--AAGAAGTGGGA  98

seq1  ATGTGTGGGTAGGGAAGTGGG---GGGGGAGGTTGTGGGGGACTTTTGGG  147
       || ||  ||| || ||| ||   || | ||| | | ||| ||||| |||
seq2  GTGGGTCAGTAAGGGAGTAGGGCAGGTGAAGGGTTTAGGGAACTTTCGGG  148

seq1  ATAGCATT  155
      ||||||||
seq2  ATAGCATT  156

seq1: chr18_31346815_31347329
seq2: B6Ng01-010D16.g_65_579 (reverse)

seq1  CACACACACACACACCTACATGTGCTCACTCACCCACACAAAGTAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACCTACATGTGCTCACTCACCCACACAAAGTAAACAA  50

seq1  ACAAAACATGCACAAAAGAAATATAGCAAGATTTATATTTCTTTTTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACATGCACAAAAGAAATATAGCAAGATTTATATTTCTTTTTTAAT  100

seq1  GTTAATTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCT  150

seq1  TTTCCTAGTTTCCTCTCCGAAAGTTCCCTATACCCTCCCCTGGCCCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGTTTCCTCTCCGAAAGTTCCCTATACCCTCCCCTGGCCCTGCT  200

seq1  CCCCAACCCACCCACTCCTGCTTCCTGGCCCTGGCAATCCCCTGTACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACCCACCCACTCCTGCTTCCTGGCCCTGGCAATCCCCTGTACTGG  250

seq1  GGAATATAATCTTTGCAAGACCAAGGGCCTCTGTACCCATTGATGGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATAATCTTTGCAAGACCAAGGGCCTCTGTACCCATTGATGGCAGA  300

seq1  CTAGGCCATCCTCTGCTACATATGCAGCTAGAGACACAAGCTCTGGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCATCCTCTGCTACATATGCAGCTAGAGACACAAGCTCTGGGGGG  350

seq1  TACTGATTAGTTCATATTGTTGTTCCTCCTATAGGGCTGCAGACCCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATTAGTTCATATTGTTGTTCCTCCTATAGGGCTGCAGACCCCTTC  400

seq1  AGTTCCTTGGGTACTTTCTCTAGCTCCTTCATTGGGGACCCTGTTCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTGGGTACTTTCTCTAGCTCCTTCATTGGGGACCCTGTTCCATC  450

seq1  CAATAGATGACTGTGAGCATTCACTTCTGTATTTGCCAGGTACTAGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGATGACTGTGAGCATTCACTTCTGTATTTGCCAGGTACTAGCATA  500

seq1  GCCTCACAAGAATTC  515
      |||||||||||||||
seq2  GCCTCACAAGAATTC  515