BAC Information

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BAC

Clone NameB6Ng01-010K06
Chromosome18 (Build37)
Map Location 29,015,834 - 29,145,078
singlet/doubletdoublet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010K06.bB6Ng01-010K06.g
ACCDH846251DH846252
length1,0651,031
definitionDH846251|Mus musculus domesticus DNA, BAC clone: B6Ng01-010K06, 5' end.DH846252|Mus musculus domesticus DNA, BAC clone: B6Ng01-010K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,015,834 - 29,016,901)(29,144,046 - 29,145,078)
sequence
gaattctaagctgagttggttgcaaggtatgctgtggctggctcataagc
agcctggaacccaagtaccttcagttatgtcaatctctgcctaagcatca
ctcatgtgtatttcgatgaatgcatcagcacggtttaagctttcacatac
agagagccaaatgtgatggaggttgcaaaggctcattcatactctccagg
caaaaggaaagcagtgtgactatgggacttaatgttctctaccatggagg
gaagggctacagtttttataaaaagagacaggaagagtagacggggattc
cagttctgtgttcaaagagaattaagggaatatttgaaaaagaaaacaag
gacaaaaatacggtgactgctgaaataaagtttcattcttgacagcaaaa
actctatgtacaaagcaagtgttgagattatcaaatatccacaatctcct
taaatacctacacatcacaaataatatctcccgttttatccaaaattttc
ttcaagtatgtcaacactcaagacttcatgtgcaatttgcttgattttcc
tagttttttccctgtactccaagcaggagctcttacgattaagactgccc
tgtggtgatcatgagggaagaagtgtccctgaatagcttcatccctccaa
acaaccttttccacattcttagtttggtctttacaagatcctgttcattg
cagtggtacaatccctgaagagtaagtagttgaaggtgtgcattctactc
aattttaaaatcctttttacagtatattttgattaccttttctatatgca
caatacattcataaaagcaaaagcaacaccctatcaagggcctggtcttt
ggaaaatatgccagaagtgaactatggttggtcagagctctgctgggaga
catcctgtccaaaggagaacatgttatagacaaagccaaggaggggatgc
agctctatgaaatacagtttagcctgatcactgagcaaagatgagaggag
tctcaagtgctccagttttatgatgcaccaaagaatggcattccttgttc
ctgaacaaaactgct
gaattcactggattgaatttcactggaaatgtgaattggggatgggtttt
ataaaggagagattgtcagttacttgacgaaactaataagctgatttcca
tccacgaggacaaaggagaaagaaagtgagggaatcaccattttctgctg
taacaatgacagttgggaggcacttatgcttcttccaatgataataattt
ctatttccatggctcctctttcaagatgtttgaagtattttacaacaggt
ttttgccatccacccttacatttcagagagaagaaatacaaataatccga
tcctcattttccaaccagcagaagggacttaagaatgcctgaatacagtt
tgatcttttttttccaaagaaacttctaataaaatgtgctcagtcacaat
tgtgaagaaaaagaaagaagtgtaaaatatgggcacaaaatatctcccaa
agtccccactgtcttctagtaccctatctatttaaaggagaaaattgaag
aatacattcaataatatcacacacacacactcgcacacacatatatattt
tccattatagccattgactaatatcaatttaagcattttaacatgtcatc
tttatctacttctctgacttcaactatgttatttcttccagtgaatcata
taatctatgtttaggagttagcgagcagacacatagtcaggttaattttt
taatatacacaactaattttccttgaaaatagagtggaaatatataatcc
attcttgcacaaaatggagtccaagatttcagtcatcaagaactggaaaa
aaaatactataataacaaaagactttctcttctggtttagagcatattat
acttttgtcttgtttatatctccaattttcattggttataatggattctg
attattgccagtgataaatagatgcaagcagaacagtgagccgaattgtt
ggttccttgtaacttggaaatgacggttaaagatagaaggggggagttaa
agctgaagggttgatttaggttacagctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29015834_29016901
seq2: B6Ng01-010K06.b_44_1108

seq1  GAATTCTAAGCTGAGTTGGTTGCAAGGTATGCTGTGGCTGGCTCATAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGCTGAGTTGGTTGCAAGGTATGCTGTGGCTGGCTCATAAGC  50

seq1  AGCCTGGAACCCAAGTACCTTCAGTTATGTCAATCTCTGCCTAAGCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGAACCCAAGTACCTTCAGTTATGTCAATCTCTGCCTAAGCATCA  100

seq1  CTCATGTGTATTTCGATGAATGCATCAGCACGGTTTAAGCTTTCACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTGTATTTCGATGAATGCATCAGCACGGTTTAAGCTTTCACATAC  150

seq1  AGAGAGCCAAATGTGATGGAGGTTGCAAAGGCTCATTCATACTCTCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCAAATGTGATGGAGGTTGCAAAGGCTCATTCATACTCTCCAGG  200

seq1  CAAAAGGAAAGCAGTGTGACTATGGGACTTAATGTTCTCTACCATGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAAAGCAGTGTGACTATGGGACTTAATGTTCTCTACCATGGAGG  250

seq1  GAAGGGCTACAGTTTTTATAAAAAGAGACAGGAAGAGTAGACGGGGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTACAGTTTTTATAAAAAGAGACAGGAAGAGTAGACGGGGATTC  300

seq1  CAGTTCTGTGTTCAAAGAGAATTAAGGGAATATTTGAAAAAGAAAACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGTGTTCAAAGAGAATTAAGGGAATATTTGAAAAAGAAAACAAG  350

seq1  GACAAAAATACGGTGACTGCTGAAATAAAGTTTCATTCTTGACAGCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAATACGGTGACTGCTGAAATAAAGTTTCATTCTTGACAGCAAAA  400

seq1  ACTCTATGTACAAAGCAAGTGTTGAGATTATCAAATATCCACAATCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATGTACAAAGCAAGTGTTGAGATTATCAAATATCCACAATCTCCT  450

seq1  TAAATACCTACACATCACAAATAATATCTCCCGTTTTATCCAAAATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCTACACATCACAAATAATATCTCCCGTTTTATCCAAAATTTTC  500

seq1  TTCAAGTATGTCAACACTCAAGACTTCATGTGCAATTTGCTTGATTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTATGTCAACACTCAAGACTTCATGTGCAATTTGCTTGATTTTCC  550

seq1  TAGTTTTTTCCCTGTACTCCAAGCAGGAGCTCTTACGATTAAGACTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTTCCCTGTACTCCAAGCAGGAGCTCTTACGATTAAGACTGCCC  600

seq1  TGTGGTGATCATGAGGGAAGAAGTGTCCCTGAATAGCTTCATCCCTCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGATCATGAGGGAAGAAGTGTCCCTGAATAGCTTCATCCCTCCAA  650

seq1  ACAACCTTTTCCACATTCTTAGTTTGGTCTTTACAAGATCCTGTTCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTTTCCACATTCTTAGTTTGGTCTTTACAAGATCCTGTTCATTG  700

seq1  CAGTGGTACAATCCCTGAAGAGTAAGTAGTTGAAGGTGTGCATTCTACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTACAATCCCTGAAGAGTAAGTAGTTGAAGGTGTGCATTCTACTC  750

seq1  AATTTTAAAATCCTTTTTACAGTATATTTTGATTACCTTTTCTATATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAATCCTTTTTACAGTATATTTTGATTACCTTTTCTATATGCA  800

seq1  CAATACATTCATAAAAGCAAAAGCAACACCCTATCAAGGGCCTGGTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATTCATAAAAGCAAAAGCAACACCCTATCAAGGGCCTGGTCTTT  850

seq1  GGAAAATATGCCAGAAGTGAACTATGGTTGGTCAGAGCTCTGCTGGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATATGCCAGAAGTGAACTATGGTTGGTCAGAGCTCTGCTGGGAGA  900

seq1  CATCCTGTCCAAAGGAGAACATGTTATAGACAAAGCCAAGGAGGGGATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTCCAAAGGAGAACATGTTATAGACAAAGCCAAGGAGGGGATGC  950

seq1  AAGCTCTATGAAATACAGTTTAGCCTGAATCACTGAGCAAAGGATGAGAG  1000
       |||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  -AGCTCTATGAAATACAGTTTAGCCTG-ATCACTGAGCAAA-GATGAGAG  997

seq1  GAGTCTCAGAGTGCTCCAG-TGTATGAGTGCACCAGAG-ATGGCATTCCT  1048
      |||||||| |||||||||| | ||||| ||||||| || |||||||||||
seq2  GAGTCTCA-AGTGCTCCAGTTTTATGA-TGCACCAAAGAATGGCATTCCT  1045

seq1  TGTTCCTGAGCAAAACTGCT  1068
      ||||||||| ||||||||||
seq2  TGTTCCTGAACAAAACTGCT  1065

seq1: chr18_29144046_29145078
seq2: B6Ng01-010K06.g_66_1096 (reverse)

seq1  GAGAGCTGGTAACCTAAATTCCACCC-TCAGCTTTAACTCCCCCCTTCTA  49
      ||||||| |||||||||| || |||| |||||||||||||||||||||||
seq2  GAGAGCT-GTAACCTAAA-TCAACCCTTCAGCTTTAACTCCCCCCTTCTA  48

seq1  TCTATAACCGTCATTTCCAAGTTAC-AGGAACCAACAATTCGGCCTCACT  98
      ||| ||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  TCTTTAACCGTCATTTCCAAGTTACAAGGAACCAACAATTCGG-CTCACT  97

seq1  GTTCTGCTTGCATCTATTTATCACTGGCAATAATCAGAATCCATTATAAC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTTGCATCTATTTATCACTGGCAATAATCAGAATCCATTATAAC  147

seq1  CAATGAAAATTGGAAGATATAAACAAGACAAAAGTATAATATGCTCTAAA  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAATTGG-AGATATAAACAAGACAAAAGTATAATATGCTCTAAA  196

seq1  CCAGAAGAGAAAGTCTTTTGTTATTATAGTATTTTTTTTCCAGTTCTTGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAGAAAGTCTTTTGTTATTATAGTATTTTTTTTCCAGTTCTTGA  246

seq1  TGACTGAAATCTTGGACTCCATTTTGTGCAAGAATGGATTATATATTTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAATCTTGGACTCCATTTTGTGCAAGAATGGATTATATATTTCC  296

seq1  ACTCTATTTTCAAGGAAAATTAGTTGTGTATATTAAAAAATTAACCTGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTTTCAAGGAAAATTAGTTGTGTATATTAAAAAATTAACCTGAC  346

seq1  TATGTGTCTGCTCGCTAACTCCTAAACATAGATTATATGATTCACTGGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTCTGCTCGCTAACTCCTAAACATAGATTATATGATTCACTGGAA  396

seq1  GAAATAACATAGTTGAAGTCAGAGAAGTAGATAAAGATGACATGTTAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACATAGTTGAAGTCAGAGAAGTAGATAAAGATGACATGTTAAAA  446

seq1  TGCTTAAATTGATATTAGTCAATGGCTATAATGGAAAATATATATGTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAATTGATATTAGTCAATGGCTATAATGGAAAATATATATGTGTG  496

seq1  TGCGAGTGTGTGTGTGTGATATTATTGAATGTATTCTTCAATTTTCTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGTGTGTGTGTGTGATATTATTGAATGTATTCTTCAATTTTCTCCT  546

seq1  TTAAATAGATAGGGTACTAGAAGACAGTGGGGACTTTGGGAGATATTTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGATAGGGTACTAGAAGACAGTGGGGACTTTGGGAGATATTTTG  596

seq1  TGCCCATATTTTACACTTCTTTCTTTTTCTTCACAATTGTGACTGAGCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATATTTTACACTTCTTTCTTTTTCTTCACAATTGTGACTGAGCAC  646

seq1  ATTTTATTAGAAGTTTCTTTGGAAAAAAAAGATCAAACTGTATTCAGGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTAGAAGTTTCTTTGGAAAAAAAAGATCAAACTGTATTCAGGCA  696

seq1  TTCTTAAGTCCCTTCTGCTGGTTGGAAAATGAGGATCGGATTATTTGTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGTCCCTTCTGCTGGTTGGAAAATGAGGATCGGATTATTTGTAT  746

seq1  TTCTTCTCTCTGAAATGTAAGGGTGGATGGCAAAAACCTGTTGTAAAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTCTGAAATGTAAGGGTGGATGGCAAAAACCTGTTGTAAAATA  796

seq1  CTTCAAACATCTTGAAAGAGGAGCCATGGAAATAGAAATTATTATCATTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACATCTTGAAAGAGGAGCCATGGAAATAGAAATTATTATCATTG  846

seq1  GAAGAAGCATAAGTGCCTCCCAACTGTCATTGTTACAGCAGAAAATGGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCATAAGTGCCTCCCAACTGTCATTGTTACAGCAGAAAATGGTG  896

seq1  ATTCCCTCACTTTCTTTCTCCTTTGTCCTCGTGGATGGAAATCAGCTTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTCACTTTCTTTCTCCTTTGTCCTCGTGGATGGAAATCAGCTTAT  946

seq1  TAGTTTCGTCAAGTAACTGACAATCTCTCCTTTATAAAACCCATCCCCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCGTCAAGTAACTGACAATCTCTCCTTTATAAAACCCATCCCCAA  996

seq1  TTCACATTTCCAGTGAAATTCAATCCAGTGAATTC  1033
      |||||||||||||||||||||||||||||||||||
seq2  TTCACATTTCCAGTGAAATTCAATCCAGTGAATTC  1031