BAC Information

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BAC

Clone NameB6Ng01-011C09
Chromosome18 (Build37)
Map Location 43,491,881 - 43,604,788
singlet/doubletdoublet
Overlap geneDpysl3, LOC100042074
Upstream geneRbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a
Downstream geneLOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011C09.bB6Ng01-011C09.g
ACCDH846612DH846613
length1,1301,142
definitionDH846612|Mus musculus domesticus DNA, BAC clone: B6Ng01-011C09, 5' end.DH846613|Mus musculus domesticus DNA, BAC clone: B6Ng01-011C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,603,656 - 43,604,788)(43,491,881 - 43,493,017)
sequence
gaattccagtgttctgaagacccatgtcttagaattggagtagaacagca
tttgctttggtatatgaattatgatttccttcactttgggatgcgattgc
ctgatggtgctcttgcaagttccagctttccaggaatgagggactctttg
tactggccacattggccaaagattgtgcttgaaaacaaataatttgaaaa
ttcacttatttgtgtgctgggagaatggctccattgatctagtgctggct
gcacacacgtaagatgtgagttcacatccccagcacgtatgctaaaagct
gggtgaagaaatgagcctctaatttcagtgctgaggagacagagacaaga
gaaagctggaggcttgcctgtcagctaatacaaactgaaggtctccaggt
tcagtgaaagatcctgtagtcaatgaagattgacctttcacctccacact
catgcacacacagagaaacgtgtacacagacagatcaacatacacataaa
taaacagtcagttatttaacagagacaatagttttcaaaatcgcaggaaa
atgataatctcttaatagataactgactgtagaacattgtaagtagcaca
cttcaatgcagtgcatgttactcaaaagcaaatgagtaaaatcaggtgaa
tatttataaatcctacctagtgaatacatgggggtttaatagattactgt
ctgtcttcctatattttttaaaactataattgaaaaggaaggagagggaa
atattggatttgctgttattattttatctttgaagagtaaatactagggg
gattgttctatcaaacaaataaaactagattgtcaaagtaataatatcga
cttggcaatggtagatttataaatgggattgtgaccgtgagttttaattg
ggaaaatttaataaataataagctaagcaaaagcttagaaccatagtaaa
tgctacaactggcaggtggttgggtagtaactcatttaatgtctggctct
gggtagagatctttatttcagatttaattggggctgtgagttgcaccatg
aagacaagaacctcagagcacagagtggacatgttgttttatcatcatga
atcagcagcttgctttagcacttgtctctt
gaattcccaagttacatgagccacctggctctctgtgttgtttttaacga
aatttcaaacatttgattttgctaataaagaggcaggagccaaatgctgg
ggtaagagcctgctagctcagggaggcagataaaacatccagatgaccct
ttgatgacattcatccacagctgacgccccaaaactaagctctcctccat
gacttctcaataacccttcaaaccaaatatccatcctttctacttcctgt
gtctctctgtattcatcctctgtattcactctctgtttttttttccctat
gttcactccctttctggttgcttgttctgcctcttgaccaatggttgact
ttatttaaccctgtttacaataaacagaaagctcttggattaaagttgta
tgctagggctgagccacacaaggaaaaacaggttttcccagtaaataact
taatcttggtgtacacagcgtggtcaaacatcctgcaacacccatggaca
tctcacgaggttgtagacctcacctataccccgaacatactcttcaagga
ttccctgagggacaggttttagtttgattagtgcctgagcctttgatttg
gttcatggatagttctacctgggccaccctccctcagtcccttaccacag
ccttgtcccagatgacagacatacgctcctccacgccattggtgccttca
gggatggctgtgaagttgtccttcccaatggctttctgggcagtgctaaa
ggtacagtgggcactttccagagagctgcagatccccgctggaaaaagat
aaagtttgcacatgtttaggagagatggctggaaaatactgagtaaccaa
aaatcatgtcttcatttgtaatctctctatctcccactaagctgtgtgat
cttggctaagtttcctgtcctctttgggctgctacccatccgtaaagtga
ggactagaatcagatcatgtcttctgtggccaattacaaagactcagatg
aaggctggagagcttgcttcagtggttatgatcccctcgctccttgctgc
agaaggattcaggttggtcttcagcactcaattacaggggctcacaactg
gcctctcacccgacttccatgcttacttataacctcttctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_43603656_43604788
seq2: B6Ng01-011C09.b_48_1177 (reverse)

seq1  AAGAGACAAGTGCTTAAAGC-AGCTGCTGA-TCATGATGATAAAAC-ACA  47
      ||||||||||||| |||||| ||||||||| ||||||||||||||| |||
seq2  AAGAGACAAGTGC-TAAAGCAAGCTGCTGATTCATGATGATAAAACAACA  49

seq1  TGTCCACTTCCTGTGCTCTTGAGTTCTTGTCTTCATGGTGCAAACTCACA  97
      ||||||||  |||||||||   ||||||||||||||||||| ||||||||
seq2  TGTCCACT--CTGTGCTCTGAGGTTCTTGTCTTCATGGTGC-AACTCACA  96

seq1  GGCCCAATTTAAATTCTGAAATAAAGATCTCTACCCAGGAGCCAGACAAT  147
      | |||||||  || ||||||||||||||||||||||| ||||||||| ||
seq2  GCCCCAATT--AAATCTGAAATAAAGATCTCTACCCA-GAGCCAGAC-AT  142

seq1  GAATTGAGTTACTACCCAACCACCTGCCAGTTGTAGCATTTACTATGGTT  197
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGTTACTACCCAACCACCTGCCAGTTGTAGCATTTACTATGGTT  192

seq1  CTAAGCTTTTGCTTAGCTTATTATTTTATTAAATTTT-CCAATTAATACT  246
      ||||||||||||||||||||||| ||||||||||||| |||||||| |||
seq2  CTAAGCTTTTGCTTAGCTTATTA-TTTATTAAATTTTCCCAATTAAAACT  241

seq1  CACGGTCACAAT-CCATTTATAAATCTACCATTGCCAAGTCGATATTATT  295
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACGGTCACAATCCCATTTATAAATCTACCATTGCCAAGTCGATATTATT  291

seq1  ACTTTGACAATCTAGTTTTATTTGTTTGATAGAACAATCCCCCTAGTATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGACAATCTAGTTTTATTTGTTTGATAGAACAATCCCCCTAGTATT  341

seq1  TACTCTTCAAAGATAAAATAATAACAGCAAATCCAATATTTCCCTCTCCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCAAAGATAAAATAATAACAGCAAATCCAATATTTCCCTCTCCT  391

seq1  TCCTTTTCAATTATAGTTTT-AAAAATATAGGAAGACAGACAGTAATCTA  444
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCTTTTCAATTATAGTTTTAAAAAATATAGGAAGACAGACAGTAATCTA  441

seq1  TTAAACCCCCATGTATTCACTAGGTAGGATTTATAAATATTCACCTGATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCCCCATGTATTCACTAGGTAGGATTTATAAATATTCACCTGATT  491

seq1  TTACTCATTTGCTTTTGAGTAACATGCACTGCATTGAAGTGTGCTACTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCATTTGCTTTTGAGTAACATGCACTGCATTGAAGTGTGCTACTTA  541

seq1  CAATGTTCTACAGTCAGTTATCTATTAAGAGATTATCATTTTCCTGCGAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTCTACAGTCAGTTATCTATTAAGAGATTATCATTTTCCTGCGAT  591

seq1  TTTGAAAACTATTGTCTCTGTTAAATAACTGACTGTTTATTTATGTGTAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACTATTGTCTCTGTTAAATAACTGACTGTTTATTTATGTGTAT  641

seq1  GTTGATCTGTCTGTGTACACGTTTCTCTGTGTGTGCATGAGTGTGGAGGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCTGTCTGTGTACACGTTTCTCTGTGTGTGCATGAGTGTGGAGGT  691

seq1  GAAAGGTCAATCTTCATTGACTACAGGATCTTTCACTGAACCTGGAGACC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTCAATCTTCATTGACTACAGGATCTTTCACTGAACCTGGAGACC  741

seq1  TTCAGTTTGTATTAGCTGACAGGCAAGCCTCCAGCTTTCTCTTGTCTCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTGTATTAGCTGACAGGCAAGCCTCCAGCTTTCTCTTGTCTCTG  791

seq1  TCTCCTCAGCACTGAAATTAGAGGCTCATTTCTTCACCCAGCTTTTAGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCAGCACTGAAATTAGAGGCTCATTTCTTCACCCAGCTTTTAGCA  841

seq1  TACGTGCTGGGGATGTGAACTCACATCTTACGTGTGTGCAGCCAGCACTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGCTGGGGATGTGAACTCACATCTTACGTGTGTGCAGCCAGCACTA  891

seq1  GATCAATGGAGCCATTCTCCCAGCACACAAATAAGTGAATTTTCAAATTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATGGAGCCATTCTCCCAGCACACAAATAAGTGAATTTTCAAATTA  941

seq1  TTTGTTTTCAAGCACAATCTTTGGCCAATGTGGCCAGTACAAAGAGTCCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCAAGCACAATCTTTGGCCAATGTGGCCAGTACAAAGAGTCCC  991

seq1  TCATTCCTGGAAAGCTGGAACTTGCAAGAGCACCATCAGGCAATCGCATC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTGGAAAGCTGGAACTTGCAAGAGCACCATCAGGCAATCGCATC  1041

seq1  CCAAAGTGAAGGAAATCATAATTCATATACCAAAGCAAATGCTGTTCTAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTGAAGGAAATCATAATTCATATACCAAAGCAAATGCTGTTCTAC  1091

seq1  TCCAATTCTAAGACATGGGTCTTCAGAACACTGGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCTAAGACATGGGTCTTCAGAACACTGGAATTC  1130

seq1: chr18_43491881_43493017
seq2: B6Ng01-011C09.g_68_1209

seq1  GAATTCCCAAGTTACATGAGCCACCTGGCTCTCTGTGTTGTTTTTAACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGTTACATGAGCCACCTGGCTCTCTGTGTTGTTTTTAACGA  50

seq1  AATTTCAAACATTTGATTTTGCTAATAAAGAGGCAGGAGCCAAATGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAACATTTGATTTTGCTAATAAAGAGGCAGGAGCCAAATGCTGG  100

seq1  GGTAAGAGCCTGCTAGCTCAGGGAGGCAGATAAAACATCCAGATGACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGCCTGCTAGCTCAGGGAGGCAGATAAAACATCCAGATGACCCT  150

seq1  TTGATGACATTCATCCACAGCTGACGCCCCAAAACTAAGCTCTCCTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGACATTCATCCACAGCTGACGCCCCAAAACTAAGCTCTCCTCCAT  200

seq1  GACTTCTCAATAACCCTTCAAACCAAATATCCATCCTTTCTACTTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTCAATAACCCTTCAAACCAAATATCCATCCTTTCTACTTCCTGT  250

seq1  GTCTCTCTGTATTCATCCTCTGTATTCACTCTCTGTTTTTTTTTCCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTGTATTCATCCTCTGTATTCACTCTCTGTTTTTTTTTCCCTAT  300

seq1  GTTCACTCCCTTTCTGGTTGCTTGTTCTGCCTCTTGACCAATGGTTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTCCCTTTCTGGTTGCTTGTTCTGCCTCTTGACCAATGGTTGACT  350

seq1  TTATTTAACCCTGTTTACAATAAACAGAAAGCTCTTGGATTAAAGTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAACCCTGTTTACAATAAACAGAAAGCTCTTGGATTAAAGTTGTA  400

seq1  TGCTAGGGCTGAGCCACACAAGGAAAAACAGGTTTTCCCAGTAAATAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGGCTGAGCCACACAAGGAAAAACAGGTTTTCCCAGTAAATAACT  450

seq1  TAATCTTGGTGTACACAGCGTGGTCAAACATCCTGCAACACCCATGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTGGTGTACACAGCGTGGTCAAACATCCTGCAACACCCATGGACA  500

seq1  TCTCACGAGGTTGTAGACCTCACCTATACCCCGAACATACTCTTCAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACGAGGTTGTAGACCTCACCTATACCCCGAACATACTCTTCAAGGA  550

seq1  TTCCCTGAGGGACAGGTTTTAGTTTGATTAGTGCCTGAGCCTTTGATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGAGGGACAGGTTTTAGTTTGATTAGTGCCTGAGCCTTTGATTTG  600

seq1  GTTCATGGATAGTTCTACCTGGGCCACCCTCCCTCAGTCCCTTACCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGGATAGTTCTACCTGGGCCACCCTCCCTCAGTCCCTTACCACAG  650

seq1  CCTTGTCCCAGATGACAGACATACGCTCCTCCACGCCATTGGTGCCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCCCAGATGACAGACATACGCTCCTCCACGCCATTGGTGCCTTCA  700

seq1  GGGATGGCTGTGAAGTTGTCCTTCCCAATGGCTTTCTGGGCAGTGCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGCTGTGAAGTTGTCCTTCCCAATGGCTTTCTGGGCAGTGCTAAA  750

seq1  GGTACAGTGGGCAC-TTCCAGAGAGCTGCAGATCCCCGCTGGAAAAAGAT  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGTACAGTGGGCACTTTCCAGAGAGCTGCAGATCCCCGCTGGAAAAAGAT  800

seq1  AAAG-TTGCACATGTTTAGGAGAGATGGCTGGAAAATACTGAGTAACCAA  848
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGCACATGTTTAGGAGAGATGGCTGGAAAATACTGAGTAACCAA  850

seq1  AAATCATGTCTTCATTTGTAATCTCTCTATCTCCCACTAAGCTGTGTGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGTCTTCATTTGTAATCTCTCTATCTCCCACTAAGCTGTGTGAT  900

seq1  CTTGGCTAAGTTTCCTGTCCTCTTTGGGCTGCTACCCATCCGTAAAGTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTAAGTTTCCTGTCCTCTTTGGGCTGCTACCCATCCGTAAAGTGA  950

seq1  GGAACTAGAATCAGATCATGTCTTCTGTGGCCAATTACAAAGACTCAGAT  998
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-ACTAGAATCAGATCATGTCTTCTGTGGCCAATTACAAAGACTCAGAT  999

seq1  GAAGGCTGGAGAGCTGGC-TCAGTGGTTATGAT-CACTCGCT-CTTGCTG  1045
      ||||||||||||||| || |||||||||||||| | |||||| |||||||
seq2  GAAGGCTGGAGAGCTTGCTTCAGTGGTTATGATCCCCTCGCTCCTTGCTG  1049

seq1  CAG-AGGATCCAGGTTTGGTACTCAGCACTC-ATATCAGGTGGCTCACAA  1093
      ||| ||||| |||| |||||  ||||||||| ||  |||| |||||||||
seq2  CAGAAGGATTCAGG-TTGGTCTTCAGCACTCAATTACAGG-GGCTCACAA  1097

seq1  CTGG-CTCTCACCCCAGCTCCATGCTATCTTATAACTTCTTCTGG  1137
      |||| ||||||||| |  ||||||||  |||||||| ||||||||
seq2  CTGGCCTCTCACCCGACTTCCATGCTTACTTATAACCTCTTCTGG  1142