BAC Information

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BAC

Clone NameB6Ng01-011J20
Chromosome18 (Build37)
Map Location 48,072,296 - 48,192,218
singlet/doubletdoublet
Overlap genenone
Upstream geneGm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
Downstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011J20.bB6Ng01-011J20.g
ACCDH846949DH846950
length9211,058
definitionDH846949|Mus musculus domesticus DNA, BAC clone: B6Ng01-011J20, 5' end.DH846950|Mus musculus domesticus DNA, BAC clone: B6Ng01-011J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,072,296 - 48,073,216)(48,191,165 - 48,192,218)
sequence
gaattccttctcgtttctgctctacctggctaaagccctttctttgcagc
tcactccttcctaatgtgtgttagacaccctcctaggagaaggcactttt
ctaggtcaaaatcccaccaaaccgaatgggtaagcactcactgcttaggg
ttgagaaagtaatgagtctcaggagagcagaaaacaacactcaagtttcc
ttttcatgtctattgtgttcaagaatagctactggatacaaggactagga
agattaggaagtaaataaaaaaagaatcttcaacctactttccagggttt
aatgttagggcagcatttagtccccataactacaggataaaagggaagtg
gtaggtgacttatattgtctgtgacatttaaatcaccacatgctgggacc
tggctgcccagtcctatagaaagttttgttactgtattcttaactcttat
gtggtaagttgctgccatgagttcacatgaaatgtttcttcatgccaaga
tctggaaggtcctcctagatgcttttgtaaattatggaaaataatataaa
attaaatttttatttgttatcaggcacatagtagaatttacaactcttca
gactacagtgcagttcatttctgtttattaatatgacaagataaatgcct
taaaaggtaccattatttcatttggcattggtttttcttcttgagctcca
tcacaggttctattagcaattacatcagtttttgccactgtatatagctt
gatatcttaaggtcagagtgctgtttatttattttagctcttgcctctct
ttctgtgaagactctgtctcactgtgttttgtccttttagaatatgagct
tgttctaggtgggcattttggtgtagggatttctgacttgtggatggatt
gtttatttgggtttggtttgg
gaattctttgttcagttctgagccccatttttaagggggttatttgattt
tctgaggtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccagtctgttggtggtctt
tttgtcttatagacagtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgagggaag
ggtttttctatagctagaaaaacataaaagccaattgcattaaaatctct
cgttagatgggttagaggaaacagccagttatagtgacaaattttggact
gataattggattacagaggagttgtaagtttaatgacagcagtagagtgt
gatcaagcaatgttcacttttttctccataactcagctgccgagtgcaca
tataccagagatcccttcgaactgccctgtgtagactctaaaataaaatt
aaaagagagatttaaaaacaaccaagaactctataagaatctcagctgtc
ttcttcagagaaaaattgaaaatgtactctgaccctactaaaaatacaaa
ataaacaactgcagtccgaaataaactatccccatttgatgactacttat
ttccaagggagttccggttgccagtccagctggtgctatgatattcccat
acctgattaagagacaaacagtgtagtgttcctgtgatgagtgatggtga
actaatttcacagtcaccagcttatgtgctgcttaggctgattcagaatt
accattgacatcagaagccatcagattggaacttgtcagctgatatcact
cacttctgtcgtatcctgttgtacaaatggctttctaaggtctagcgggc
catatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_48072296_48073216
seq2: B6Ng01-011J20.b_45_965

seq1  GAATTCCTTCTCGTTTCTGCTCTACCTGGCTAAAGCCCTTTCTTTGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTCGTTTCTGCTCTACCTGGCTAAAGCCCTTTCTTTGCAGC  50

seq1  TCACTCCTTCCTAATGTGTGTTAGACACCCTCCTAGGAGAAGGCACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTTCCTAATGTGTGTTAGACACCCTCCTAGGAGAAGGCACTTTT  100

seq1  CTAGGTCAAAATCCCACCAAACCGAATGGGTAAGCACTCACTGCTTAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCAAAATCCCACCAAACCGAATGGGTAAGCACTCACTGCTTAGGG  150

seq1  TTGAGAAAGTAATGAGTCTCAGGAGAGCAGAAAACAACACTCAAGTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAGTAATGAGTCTCAGGAGAGCAGAAAACAACACTCAAGTTTCC  200

seq1  TTTTCATGTCTATTGTGTTCAAGAATAGCTACTGGATACAAGGACTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGTCTATTGTGTTCAAGAATAGCTACTGGATACAAGGACTAGGA  250

seq1  AGATTAGGAAGTAAATAAAAAAAGAATCTTCAACCTACTTTCCAGGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGGAAGTAAATAAAAAAAGAATCTTCAACCTACTTTCCAGGGTTT  300

seq1  AATGTTAGGGCAGCATTTAGTCCCCATAACTACAGGATAAAAGGGAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGGGCAGCATTTAGTCCCCATAACTACAGGATAAAAGGGAAGTG  350

seq1  GTAGGTGACTTATATTGTCTGTGACATTTAAATCACCACATGCTGGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGACTTATATTGTCTGTGACATTTAAATCACCACATGCTGGGACC  400

seq1  TGGCTGCCCAGTCCTATAGAAAGTTTTGTTACTGTATTCTTAACTCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCCAGTCCTATAGAAAGTTTTGTTACTGTATTCTTAACTCTTAT  450

seq1  GTGGTAAGTTGCTGCCATGAGTTCACATGAAATGTTTCTTCATGCCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAGTTGCTGCCATGAGTTCACATGAAATGTTTCTTCATGCCAAGA  500

seq1  TCTGGAAGGTCCTCCTAGATGCTTTTGTAAATTATGGAAAATAATATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGGTCCTCCTAGATGCTTTTGTAAATTATGGAAAATAATATAAA  550

seq1  ATTAAATTTTTATTTGTTATCAGGCACATAGTAGAATTTACAACTCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTTTATTTGTTATCAGGCACATAGTAGAATTTACAACTCTTCA  600

seq1  GACTACAGTGCAGTTCATTTCTGTTTATTAATATGACAAGATAAATGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGTGCAGTTCATTTCTGTTTATTAATATGACAAGATAAATGCCT  650

seq1  TAAAAGGTACCATTATTTCATTTGGCATTGGTTTTTCTTCTTGAGCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTACCATTATTTCATTTGGCATTGGTTTTTCTTCTTGAGCTCCA  700

seq1  TCACAGGTTCTATTAGCAATTACATCAGTTTTTGCCACTGTATATAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGTTCTATTAGCAATTACATCAGTTTTTGCCACTGTATATAGCTT  750

seq1  GATATCTTAAGGTCAGAGTGCTGTTTATTTATTTTAGCTCTTGCCTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTAAGGTCAGAGTGCTGTTTATTTATTTTAGCTCTTGCCTCTCT  800

seq1  TTCTGTGAAGACTCTGTCTCACTGTGTTTTGTCCTTTTAGAATATGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAAGACTCTGTCTCACTGTGTTTTGTCCTTTTAGAATATGAGCT  850

seq1  TGTTCTAGGTGGGCATTTTGGTGTAGGGATTTCTGACTTGTGGATGGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGGTGGGCATTTTGGTGTAGGGATTTCTGACTTGTGGATGGATT  900

seq1  GTTTATTTGGGTTTGGTTTGG  921
      |||||||||||||||||||||
seq2  GTTTATTTGGGTTTGGTTTGG  921

seq1: chr18_48191165_48192218
seq2: B6Ng01-011J20.g_67_1124 (reverse)

seq1  AAAATATGGCCCCGCTAGACC-TAGGAAACCATTTGTAC-ACAGGATACG  48
      ||||||||| ||||||||||| ||| || |||||||||| ||||||||||
seq2  AAAATATGG-CCCGCTAGACCTTAGAAAGCCATTTGTACAACAGGATACG  49

seq1  -CAGAAGTGAGTGATATCAGCTGGCAAGTTCCAATCTGATGGCTTCTGAT  97
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACAGAAGTGAGTGATATCAGCTGACAAGTTCCAATCTGATGGCTTCTGAT  99

seq1  GTCAATGGTAATTCTGAATCAGCCTAAGCAGCACATAGGCTGGTGACTGT  147
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTCAATGGTAATTCTGAATCAGCCTAAGCAGCACATAAGCTGGTGACTGT  149

seq1  GAAATTAG-TCAACATCACTCATCACAGGAACACTACACTGTTTGTCTCT  196
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGTTCACCATCACTCATCACAGGAACACTACACTGTTTGTCTCT  199

seq1  TAATCAGGTATGGGAATATCATAGCACCAGCTTGGACTGGCAACCGGAAC  246
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAATCAGGTATGGGAATATCATAGCACCAGC-TGGACTGGCAACCGGAAC  248

seq1  T-CCTTGGAAATAAGTAGTCATCAAATGGGGATAGTTTATTTCGGACTGC  295
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGGAAATAAGTAGTCATCAAATGGGGATAGTTTATTTCGGACTGC  298

seq1  AGTTGTTTATTTTGTATTTTTAGTAGGGTCAGAGTACATTTTCAA-TTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGTTGTTTATTTTGTATTTTTAGTAGGGTCAGAGTACATTTTCAATTTTT  348

seq1  CTCTGAAGAAGACAGCTGAGATTCTTATAGAGTTCTTGGTTGTTTTTAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGAAGACAGCTGAGATTCTTATAGAGTTCTTGGTTGTTTTTAAA  398

seq1  TCTCTCTTTTAATTTTATTTTAGAGTCTACACAGGGCAGTTCGAAGGGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTTAATTTTATTTTAGAGTCTACACAGGGCAGTTCGAAGGGAT  448

seq1  CTCTGGTATATGTGCACTCGGCAGCTGAGTTATGGAGAAAAAAGTGAACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTATATGTGCACTCGGCAGCTGAGTTATGGAGAAAAAAGTGAACA  498

seq1  TTGCTTGATCACACTCTACTGCTGTCATTAAACTTACAACTCCTCTGTAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGATCACACTCTACTGCTGTCATTAAACTTACAACTCCTCTGTAA  548

seq1  TCCAATTATCAGTCCAAAATTTGTCACTATAACTGGCTGTTTCCTCTAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTATCAGTCCAAAATTTGTCACTATAACTGGCTGTTTCCTCTAAC  598

seq1  CCATCTAACGAGAGATTTTAATGCAATTGGCTTTTATGTTTTTCTAGCTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAACGAGAGATTTTAATGCAATTGGCTTTTATGTTTTTCTAGCTA  648

seq1  TAGAAAAACCCTTCCCTCGATCCATACTTATCTCCTTGTACTAAGGTCAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAACCCTTCCCTCGATCCATACTTATCTCCTTGTACTAAGGTCAA  698

seq1  ATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTA  748

seq1  TAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAA  798

seq1  TTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAA  848

seq1  ATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCT  898

seq1  ATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCT  948

seq1  AAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGT  998

seq1  GGACCTCAGAAAATCAAATAACCCCCTTAAAAATGGGGCTCAGAACTGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCAGAAAATCAAATAACCCCCTTAAAAATGGGGCTCAGAACTGAA  1048

seq1  CAAAGAATTC  1054
      ||||||||||
seq2  CAAAGAATTC  1058