BAC Information

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BAC

Clone NameB6Ng01-013D07
Chromosome18 (Build37)
Map Location 88,186,731 - 88,187,888
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383318, Ppia-ps18_1039.1, LOC329008
Downstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6, Rttn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013D07.bB6Ng01-013D07.g
ACCDH848084DH848085
length1,1391,083
definitionDH848084|Mus musculus domesticus DNA, BAC clone: B6Ng01-013D07, 5' end.DH848085|Mus musculus domesticus DNA, BAC clone: B6Ng01-013D07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcacttcttccctatggtgccaacagccaattgctcagatttg
ttctgaacaagcacagtatgttgttcagtcaactttttgatgattcctca
aataatcttagaatcaaatatattggtttagttccttattctctacaact
gcagaactttctgaaatgtctctagagcatagtttttctatggtttttcc
tttttactattttaagccatgcatcctccctcaatttgtagtttacatgt
caaatagttgtaaactaccagacagtaggggaatgtctgatgtctctgtg
ttattgtgagtttatgataagcatagctagtgatttcatgagctgtttgt
gtaccctggaaacaagaggaatctcctatttcatctggcacctaaacttc
tatttctaaattgtatagctggaggattaataaaaacttcaggtgttttg
tagtcttgcagatcataaatataagtaataaattattatcttttaatgag
tcaattttagtattctaaacaatttctaaattttatctatgaaatattat
taccctgagggcacataattcaatagtagaataacaacttttataaattt
catttgaaggagtttaactatttctatgatatttaaactcctagatcttg
atgtagagactgatacagtattgaacatttttaattaaatgactcaatgt
ctgagtttattgctcaagggagagtaaatgtgtagccccagagttaaatt
cttagcaccacgttaattaaataataaatattattaaaaattccttttca
ttaaatagatataatttatatttatatgtacatacattttgtacatataa
aattagaaaaatatatatatgattttaggaaaattaatatttgagacaaa
atttatcacagttatctaaatttggcaggtcaaggtatagcaagaagtta
aattctcagtcaacatatatttttcataagcatgttatgtatggttcatg
attttagtgtttgacatcacaaagtcaataaagatagtgtgaaaatatgc
aaattataaaaccttcaagtatggctaaatcatatatcttagttatgaca
tgtcttgatattatgactgaaactttatgaacatataca
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggagatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaagatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctggccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggag
caaaacacccttggaaaggagttacagagacaaagtttggagctgagata
aaaggatggaccatgtagacactaccatatccggggatccatcccataat
cagcttccaaatgctgacaccattgcatacactagcagattatgctgaaa
ggaccctgatatagcttttctcttgtcagagtatgcctgggcctagcaag
caaagagtggatgctcacagtcgctttttggatggatcacatggccccca
atgagagctagagaagtaccaaagagctaaaggatctgcacactatagtg
acacattatgactaccagtacccgagctctgactcttagctgcatatgct
atcaaagatgctagttcggcatcactgaagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88186731_88187888
seq2: B6Ng01-013D07.b_47_1185 (reverse)

seq1  TGTATATGTTCATATATATGTTTTCAGTCTAATAATATCAAGACATGTCA  50
      |||||||||||||| |     ||||||||  |||||||||||||||||||
seq2  TGTATATGTTCATAAA----GTTTCAGTC--ATAATATCAAGACATGTCA  44

seq1  TAACATAGATATATGGATTTAGCCATTACTTTTAAAAGGTTTTATAATTT  100
      ||||  |||||||| |||||||||| |||||    |||||||||||||||
seq2  TAACTAAGATATAT-GATTTAGCCA-TACTT---GAAGGTTTTATAATTT  89

seq1  GCATATTTTCACACTAATCTTTATTGACTTTGTGATGTCAAAACAACCTT  150
      ||||||||||||||| ||||||||||||||||||||||||    |||  |
seq2  GCATATTTTCACACT-ATCTTTATTGACTTTGTGATGTCA----AACACT  134

seq1  AAAATCATGGAACCATACATAACAATGCTTATGAAAAATATATGTTGACC  200
      |||||||| |||||||||||||| |||||||||||||||||||||||| |
seq2  AAAATCAT-GAACCATACATAAC-ATGCTTATGAAAAATATATGTTGA-C  181

seq1  TGAGAATTTAACTTCTTGCTATACCTTGACCTGCCAAATTTAGATAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTTAACTTCTTGCTATACCTTGACCTGCCAAATTTAGATAACTG  231

seq1  TGATAAATTTTGTCTCAAATATTAATTTTCCTAAAATCATATATATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATTTTGTCTCAAATATTAATTTTCCTAAAATCATATATATATTT  281

seq1  TTCTAATTTTATATGTACAAAATGTATGTACATATAAATATAAATTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTTTATATGTACAAAATGTATGTACATATAAATATAAATTATAT  331

seq1  CTATTTAATGAAAAGGAATTTTTAATAATATTTATTATTTAATTAACGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAATGAAAAGGAATTTTTAATAATATTTATTATTTAATTAACGTG  381

seq1  GTGCTAAGAATTTAACTCTGGGGCTACACATTTACTCTCCCTTGAGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAGAATTTAACTCTGGGGCTACACATTTACTCTCCCTTGAGCAAT  431

seq1  AAACTCAGACATTGAGTCATTTAATTAAAAATGTTCAATACTGTATCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGACATTGAGTCATTTAATTAAAAATGTTCAATACTGTATCAGT  481

seq1  CTCTACATCAAGATCTAGGAGTTTAAATATCATAGAAATAGTTAAACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATCAAGATCTAGGAGTTTAAATATCATAGAAATAGTTAAACTCC  531

seq1  TTCAAATGAAATTTATAAAAGTTGTTATTCTACTATTGAATTATGTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGAAATTTATAAAAGTTGTTATTCTACTATTGAATTATGTGCCC  581

seq1  TCAGGGTAATAATATTTCATAGATAAAATTTAGAAATTGTTTAGAATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTAATAATATTTCATAGATAAAATTTAGAAATTGTTTAGAATACT  631

seq1  AAAATTGACTCATTAAAAGATAATAATTTATTACTTATATTTATGATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGACTCATTAAAAGATAATAATTTATTACTTATATTTATGATCTG  681

seq1  CAAGACTACAAAACACCTGAAGTTTTTATTAATCCTCCAGCTATACAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTACAAAACACCTGAAGTTTTTATTAATCCTCCAGCTATACAATT  731

seq1  TAGAAATAGAAGTTTAGGTGCCAGATGAAATAGGAGATTCCTCTTGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAGAAGTTTAGGTGCCAGATGAAATAGGAGATTCCTCTTGTTTC  781

seq1  CAGGGTACACAAACAGCTCATGAAATCACTAGCTATGCTTATCATAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTACACAAACAGCTCATGAAATCACTAGCTATGCTTATCATAAACT  831

seq1  CACAATAACACAGAGACATCAGACATTCCCCTACTGTCTGGTAGTTTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAACACAGAGACATCAGACATTCCCCTACTGTCTGGTAGTTTACA  881

seq1  ACTATTTGACATGTAAACTACAAATTGAGGGAGGATGCATGGCTTAAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGACATGTAAACTACAAATTGAGGGAGGATGCATGGCTTAAAAT  931

seq1  AGTAAAAAGGAAAAACCATAGAAAAACTATGCTCTAGAGACATTTCAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGGAAAAACCATAGAAAAACTATGCTCTAGAGACATTTCAGAA  981

seq1  AGTTCTGCAGTTGTAGAGAATAAGGAACTAAACCAATATATTTGATTCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCAGTTGTAGAGAATAAGGAACTAAACCAATATATTTGATTCTA  1031

seq1  AGATTATTTGAGGAATCATCAAAAAGTTGACTGAACAACATACTGTGCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTGAGGAATCATCAAAAAGTTGACTGAACAACATACTGTGCTT  1081

seq1  GTTCAGAACAAATCTGAGCAATTGGCTGTTGGCACCATAGGGAAGAAGTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAACAAATCTGAGCAATTGGCTGTTGGCACCATAGGGAAGAAGTG  1131

seq1  AAGAATTC  1158
      ||||||||
seq2  AAGAATTC  1139