BAC Information

Click to search

BAC

Clone NameB6Ng01-013E02
Chromosome18 (Build37)
Map Location 38,881,503 - 38,995,277
singlet/doubletdoublet
Overlap geneLOC666809, LOC100041894
Upstream genePcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671
Downstream geneFgf1, EG545253, Arhgap26, Nr3c1, Pabpc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013E02.bB6Ng01-013E02.g
ACCDH848121DH848122
length1,109805
definitionDH848121|Mus musculus domesticus DNA, BAC clone: B6Ng01-013E02, 5' end.DH848122|Mus musculus domesticus DNA, BAC clone: B6Ng01-013E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,994,169 - 38,995,277)(38,881,503 - 38,882,303)
sequence
gaattctggctagagctcaaggcttggggatgtcaaatcaggcaggcaca
ccatccctactaacactccctcaagctttagggagccgtgctagaggaca
tctggaatctccctgaaacattagtaccacttcgcaactgacatagtggc
cacagcatattacactgttagctttacaccatagttattaaaacaagaaa
tgaggtcacacactacccaaagcagagaagggttttttacttcatccaat
cacatgctggaggatgtgatcacataatttgggggtcttctgattacaaa
tgtttgtgatgtggggaagaggtatttcccaaattgcttccacctcctac
cccatcacgccacacaggctaaatttacacacacagcagctaaacactgg
tatccatcttattacataaacaaggaaaacctcacccagccttagctgtg
cttttctttcagccttaatgaagggttgggtcctccctgctgggaactct
gttccgtttaagaaactgatctgcttgggccaagtgtttgaggatgtgaa
tgtagaaaggcaatttacacagaaatagacttcgctgcgattttcacatc
tcatggtttcctatcatgggaaaaacgatgtgtagagtctggcccagcga
tacataagtataagatgttagattctcttacccatgtaccttagccaaaa
atacccgctttcttctctgaagtaggtgagagtaatgttcttgtaaacca
atttcttctgtgtgagatgggaagtcaggacttttggagcctgggagtga
ccaactgtgtcaagcatcccgcttagcatttcctgtgaaaatgaaaagga
aaacctatgactctctcgggatagaatgcctgcgttaacccggacaatgg
tacaggctttgggcaggccaggcttttctctgaccactgtggaggccctg
gaaggctgggaagaagaatgccatgcatggacatggtggtgctaccagac
tgtcaccccaatatttaaccgagtgaaagagagatgagttagatttgcct
ggaaatattgtttgaccgcctggacctctggggccatctgaaaggcccag
ggggcaccc
gaattctctctccaacccccactccccagccccgtattctaataaacgct
ctcacctggatcagaaaacaaatgagctcgtgaatctcatccagactctc
atggctctttctctgacaactgtaaattcacaagacactctgacaggcat
ataaaaataagaattgcccttcttgagggcttccaactgtgtgctgtgtt
ccagagagtagtacccttatttcatgtttgtatgaaggtttccatctgtg
cattgacagatctcggctaaccctaaatgctggcacatgccatgaatctg
tcatagaaataggggaatttagtcacagggaccaaaaataactgatcatg
tcatttaaggagtctgcaggaaataggcaattagacatactttgtacaac
caccccgagccttttgaaaaagtgtcaggtaccttaagtttgggggtgct
ttccagccatttgggaggccaaagcaagattgcttgtacctaggagttgg
aagccagcacgtagacccccgtctctgaaaagtatgtaaagatatttcag
gcaactgagatctaaccataggaagaaatacatgttttaccagggaaaca
ttagtaagtaatgaacaattgatttcagagggctatgtgtgtgtgtgtgt
atgtgtttacttgtgagcacagtgtaaaaacactgtagctgtctttaatg
cactttaactcctttgtgagaatagagaaaggctggagaaggctgggcag
ggtatttgacggcattgaagttaaaggatgttagaggtgagtggtgtagg
gtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_38994169_38995277
seq2: B6Ng01-013E02.b_47_1155 (reverse)

seq1  GGGTGCCCCCT-GGCCTCTCAGATTTGCCCCAGAGGTCCA-GCTGTCATA  48
      ||||||||||| ||||| ||||| | |||||||||||||| || |||| |
seq2  GGGTGCCCCCTGGGCCTTTCAGA-TGGCCCCAGAGGTCCAGGCGGTCAAA  49

seq1  C-ATATTTTCAAGC-AATCTTAAACTTCATCTCTCTTTTTCACTCGGTTA  96
      | |||||| || || |||||  ||| |||||||||  |||||||||||||
seq2  CAATATTTCCAGGCAAATCT--AAC-TCATCTCTC--TTTCACTCGGTTA  94

seq1  AATATT-GAGTGACAGTCTGGTAGCACCA-CATGTCCATTGCAT-GCATT  143
      |||||| | |||||||||||||||||||| |||||||| ||||| |||||
seq2  AATATTGGGGTGACAGTCTGGTAGCACCACCATGTCCA-TGCATGGCATT  143

seq1  CTTTCTTCCCAGCCTTCCAGGGCCTCCACAGT-GTCAGAG-AAAGCCTGG  191
      | |||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  C-TTCTTCCCAGCCTTCCAGGGCCTCCACAGTGGTCAGAGAAAAGCCTGG  192

seq1  CCTGCCCAAAGCCTGTACCATTGTCCGGGTTTAACGCAGGCATTCTATCC  241
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTGCCCAAAGCCTGTACCATTGTCCGGG-TTAACGCAGGCATTCTATCC  241

seq1  CGAGAGAGTCATAGGTTTTCCTTTTCATTTTCACAGGAAATGCTAAGCGG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGAGTCATAGGTTTTCCTTTTCATTTTCACAGGAAATGCTAAGCGG  291

seq1  GATGCTTGACACAGTTGGTCACTCCCAGGCTCCAAAAGTCCTGACTTCCC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTGACACAGTTGGTCACTCCCAGGCTCCAAAAGTCCTGACTTCCC  341

seq1  ATCTCACACAGAAGAAATTGGTTTACAAGAACATTACTCTCACCTACTTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACACAGAAGAAATTGGTTTACAAGAACATTACTCTCACCTACTTC  391

seq1  AGAGAAGAAAGCGGGTATTTTTGGCTAAGGTACATGGGTAAGAGAATCTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAAAGCGGGTATTTTTGGCTAAGGTACATGGGTAAGAGAATCTA  441

seq1  ACATCTTATACTTATGTATCGCTGGGCCAGACTCTACACATCGTTTTTCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTATACTTATGTATCGCTGGGCCAGACTCTACACATCGTTTTTCC  491

seq1  CATGATAGGAAACCATGAGATGTGAAAATCGCAGCGAAGTCTATTTCTGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAGGAAACCATGAGATGTGAAAATCGCAGCGAAGTCTATTTCTGT  541

seq1  GTAAATTGCCTTTCTACATTCACATCCTCAAACACTTGGCCCAAGCAGAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGCCTTTCTACATTCACATCCTCAAACACTTGGCCCAAGCAGAT  591

seq1  CAGTTTCTTAAACGGAACAGAGTTCCCAGCAGGGAGGACCCAACCCTTCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTTAAACGGAACAGAGTTCCCAGCAGGGAGGACCCAACCCTTCA  641

seq1  TTAAGGCTGAAAGAAAAGCACAGCTAAGGCTGGGTGAGGTTTTCCTTGTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCTGAAAGAAAAGCACAGCTAAGGCTGGGTGAGGTTTTCCTTGTT  691

seq1  TATGTAATAAGATGGATACCAGTGTTTAGCTGCTGTGTGTGTAAATTTAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATAAGATGGATACCAGTGTTTAGCTGCTGTGTGTGTAAATTTAG  741

seq1  CCTGTGTGGCGTGATGGGGTAGGAGGTGGAAGCAATTTGGGAAATACCTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGGCGTGATGGGGTAGGAGGTGGAAGCAATTTGGGAAATACCTC  791

seq1  TTCCCCACATCACAAACATTTGTAATCAGAAGACCCCCAAATTATGTGAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACATCACAAACATTTGTAATCAGAAGACCCCCAAATTATGTGAT  841

seq1  CACATCCTCCAGCATGTGATTGGATGAAGTAAAAAACCCTTCTCTGCTTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTCCAGCATGTGATTGGATGAAGTAAAAAACCCTTCTCTGCTTT  891

seq1  GGGTAGTGTGTGACCTCATTTCTTGTTTTAATAACTATGGTGTAAAGCTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTGTGTGACCTCATTTCTTGTTTTAATAACTATGGTGTAAAGCTA  941

seq1  ACAGTGTAATATGCTGTGGCCACTATGTCAGTTGCGAAGTGGTACTAATG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTAATATGCTGTGGCCACTATGTCAGTTGCGAAGTGGTACTAATG  991

seq1  TTTCAGGGAGATTCCAGATGTCCTCTAGCACGGCTCCCTAAAGCTTGAGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGAGATTCCAGATGTCCTCTAGCACGGCTCCCTAAAGCTTGAGG  1041

seq1  GAGTGTTAGTAGGGATGGTGTGCCTGCCTGATTTGACATCCCCAAGCCTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTAGTAGGGATGGTGTGCCTGCCTGATTTGACATCCCCAAGCCTT  1091

seq1  GAGCTCTAGCCAGAATTC  1109
      ||||||||||||||||||
seq2  GAGCTCTAGCCAGAATTC  1109

seq1: chr18_38881503_38882303
seq2: B6Ng01-013E02.g_68_872

seq1  GAATTCTCTCTCCAACCCCCACTCCCCAGCCCCGTATTCTAATAAACGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCCAACCCCCACTCCCCAGCCCCGTATTCTAATAAACGCT  50

seq1  CTCACCTGGATCAGAAAACAAATGAGCTCGTGAATCTCATCCAGACTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGGATCAGAAAACAAATGAGCTCGTGAATCTCATCCAGACTCTC  100

seq1  ATGGCTCTTTCTCTGACAACTGTAAATTCACAAGACACTCTGACAGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTTTCTCTGACAACTGTAAATTCACAAGACACTCTGACAGGCAT  150

seq1  ATAAAAATAAGAATTGCCCTTCTTGAGGGCTTCCAACTGTGTGCTGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAAGAATTGCCCTTCTTGAGGGCTTCCAACTGTGTGCTGTGTT  200

seq1  CCAGAGAGTAGTACCCTTATTTCATGTTTGTATGAAGGTTTCCATCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGTAGTACCCTTATTTCATGTTTGTATGAAGGTTTCCATCTGTG  250

seq1  CATTGACAGATCTCGGCTAACCCTAAATGCTGGCACATGCCATGAATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACAGATCTCGGCTAACCCTAAATGCTGGCACATGCCATGAATCTG  300

seq1  TCATAGAAATAGGGGAATTTAGTCACAGGGACCAAAAATAACTGATCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAAATAGGGGAATTTAGTCACAGGGACCAAAAATAACTGATCATG  350

seq1  TCATTTAAGGAGTCTGCAGGAAATAGGCAATTAGACATACTTTGTACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAGGAGTCTGCAGGAAATAGGCAATTAGACATACTTTGTACAAC  400

seq1  CACCCCGAGCCTTTTGAAAAAGTGTCAGGTACCTTAAGTTTGGGGGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCGAGCCTTTTGAAAAAGTGTCAGGTACCTTAAGTTTGGGGGTGCT  450

seq1  TTCCAGCCATTTGGGAGGCCAAAGCAAGATTGCTTGTACCTAGGAGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCATTTGGGAGGCCAAAGCAAGATTGCTTGTACCTAGGAGTTGG  500

seq1  AAGCCAGCACGTAGACCCCCGTCTCTGAAAAGTATGTAAAGATATTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCACGTAGACCCCCGTCTCTGAAAAGTATGTAAAGATATTTCAG  550

seq1  GCAACTGAGATCTAACCATAGGAAGAAATACATGTTTTACCAGGGAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGAGATCTAACCATAGGAAGAAATACATGTTTTACCAGGGAAACA  600

seq1  TTAGTAAGTAATGAACAATTGATTTCAGAGGGCTATGTGTGTGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAGTAATGAACAATTGATTTCAGAGGGCTATGTGTGTGTGTGTGT  650

seq1  ATGTGTTTACTTGTGAGCACAGTGTAAAAACACTGTAGCTGTCTTTAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTACTTGTGAGCACAGTGTAAAAACACTGTAGCTGTCTTTAATG  700

seq1  CACTTTAACTCC-TTGTGAGAATAGAGAAAGGCTGGAGAAGGCTGGGCA-  748
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  CACTTTAACTCCTTTGTGAGAATAGAGAAAGGCTGGAGAAGGCTGGGCAG  750

seq1  GGTAATTGACGGCA-TGAAGTTAAAGGATG-TAGAGGTGAGTGGTGTAGG  796
      |||| ||||||||| ||||||||||||||| |||||||||||||||||||
seq2  GGTATTTGACGGCATTGAAGTTAAAGGATGTTAGAGGTGAGTGGTGTAGG  800

seq1  GTACT  801
      |||||
seq2  GTACT  805