BAC Information

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BAC

Clone NameB6Ng01-013J04
Chromosome18 (Build37)
Map Location 13,842,126 - 14,003,850
singlet/doubletdoublet
Overlap geneLOC100040358, Zfp521
Upstream gene2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354, LOC665379
Downstream geneLOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013J04.bB6Ng01-013J04.g
ACCDH848354DH848355
length1,0561,006
definitionDH848354|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J04, 5' end.DH848355|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,002,792 - 14,003,850)(13,842,126 - 13,843,133)
sequence
gaattccccaaccaagagtccttgctaaagcacgtgaccatccactttat
gatcacctcaacctactacatctgtgagagctgtgacaagcagttcacct
ccgtggatgacctccagaagcacctgctggacatgcacaccttcgtcttc
ttccgctgcacactctgccaggaagtgttcgactccaaggtctctatcca
gctgcacttggccgtgaagcacagtaacgagaagaaggtgtaccgctgca
cgtcctgcaactgggacttccgcaacgagaccgacctgcagctgcacgtg
aagcacaaccacttggagaaccaaggcaaagtgcacaagtgcatcttctg
cggcgagtcgtttggcaccgaggtggagctgcagtgccacatcaccaccc
acagcaagaagtacaactgcaggttctgcagcaaagccttccacgccgtc
atcctgctggagaagcacctgcgggagaaacactgtgtgtttgaaaccaa
gacccccaactgtggcaccaacggggcctcggagcaagtgcagaaggagg
aggctgagctgcagaccttgctcaccaacagccaggagtcccataacagc
catgatgggagtgaggaggacgtggacagctctgaacccatgtatggctg
tgacatctgcggggcggcctacaccatggagacgttgctgcagaaccacc
agctccgagaccacaacatcatgcccggagaaagcgccatcgtgaagaag
aacgcggagctcattaaagggaattacaagtgtaacgtttgctcgagacc
cttcttctccgaaaacgggctccgtgaacacatgcagacccacttaggcc
cggtcaaacacttacatgttgccctttctgtggagagcgcttccctttcc
ctgttaactctcacaggagcacaaagtcacacacagcagagcttgatacc
ggtatactgtcgtatttgtagatgccctgcaagcgaaagtattttttgga
gcactgccaaatgcaccctgactgaggaattcctgactggattcgttgtg
gtggtg
gaattcaagatgctatacttaggcagaagtccatgaaggaattaattgat
acgagccagaagttgattgccatttaagtattcagcctccatcattgcca
agtttctctctttgcagaaagaaccgagcttgcctgcaaactggctcgtt
caggatgtgagcgcaagatggaatgcaacctttaatatgctgcaacacct
gcttggaaataaaggggctctgtgcctttccccctcaggagttgacagct
gacttcattacaaaggaatctggagtggtggtggaggctactcctgcctc
tgaggctctcacccagaaatgaggtgcttactggagctgcactttggcca
ctaccagagactcctgctgggtcctttttatctaggcacatccctcttcc
ttgaactcttgtttttagtgcctttagtggaaacttcctcctgaagaggg
aggaggtaagaggctttgggctgccgatgctaaacggaggagggtttgca
ggtgttcggtaatgggatctggatttctacacttcctttctccagggttc
tgctgcgctgtgcccaacaggcataaacagacaccaagtcaacgctgtcc
cactctgtggagtagcagttgagggttccctagattccttagtccagttc
tgaaacagactcagcactggtctgagaagccaggcttagagatggtgccg
tgacagtccatctgggctgagacacccattatgtttatcagaatcaaggt
aaaattttgaccctatcacccatttgtttgattttcaaagattcacaaat
gggtctccagttttattagaagacagcagatttgacttgcatcagatatc
ttaatttctgttattaccattcagcactggaccctttcctgaacagggtt
gggaggcaggctagaacagaacaccacatctagttaactgctgcttacac
cctgtgtgatgatgaaagtcacacggcacctccaaattgcctaaataact
ataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_14002792_14003850
seq2: B6Ng01-013J04.b_45_1100 (reverse)

seq1  CACCA-CACAACGAAACCCAGTCAGGGAATTCCTCAGGTCAGGGTGCATC  49
      ||||| ||||||| || ||||||| ||||||||||| |||||||||||| 
seq2  CACCACCACAACG-AATCCAGTCA-GGAATTCCTCA-GTCAGGGTGCATT  47

seq1  TGGCAGTGCTCCAAAAACTCCTCTTCGCTCTGCAGGGGCATCTTACAAAT  99
      ||||||||||||||||| | || |||||| |||| ||||||| |||||||
seq2  TGGCAGTGCTCCAAAAAATACT-TTCGCT-TGCA-GGGCATC-TACAAAT  93

seq1  ACGACAGT-TTCCGGTATCCAGGCTCTTGCTGTGTGTGACTTTGTGCT-C  147
      |||||||| | ||||||| || |||| ||||||||||||||||||||| |
seq2  ACGACAGTATACCGGTAT-CAAGCTC-TGCTGTGTGTGACTTTGTGCTCC  141

seq1  TGTGAGAGTTAACAGGG-AAGGGAAGCGCTCTCCACAGATAGGGC-ACAT  195
      ||||||||||||||||| ||||||||||||||||||||| ||||| ||||
seq2  TGTGAGAGTTAACAGGGAAAGGGAAGCGCTCTCCACAGAAAGGGCAACAT  191

seq1  GT-AGTGTTTGACCGGGCCTAAGTGGGTCTGCATGTGTTCACGGAGCCCG  244
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGTTTGACCGGGCCTAAGTGGGTCTGCATGTGTTCACGGAGCCCG  241

seq1  TTTTCGGAGAAGAAGGTTCTCGAGCAAACGTTACACTTGTAATTCCCTTT  294
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTCGGAGAAGAAGGGTCTCGAGCAAACGTTACACTTGTAATTCCCTTT  291

seq1  AATGAGCTCCGCCTTCTTCTTCACGATGGCGCTTTCTCCGGGCCTGATGT  344
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  AATGAGCTCCGCGTTCTTCTTCACGATGGCGCTTTCTCCGGGCATGATGT  341

seq1  TGTGGTCTCGGAGCTGGTGGTTCTGCAGCAACGTCTCCATGGTGTAGGCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTCGGAGCTGGTGGTTCTGCAGCAACGTCTCCATGGTGTAGGCC  391

seq1  GCCCCGCAGATGTCACAGCCATACATGGGTTCAGAGCTGTCCACGTCCTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGCAGATGTCACAGCCATACATGGGTTCAGAGCTGTCCACGTCCTC  441

seq1  CTCACTCCCATCATGGCTGTTATGGGACTCCTGGCTGTTGGTGAGCAAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCCCATCATGGCTGTTATGGGACTCCTGGCTGTTGGTGAGCAAGG  491

seq1  TCTGCAGCTCAGCCTCCTCCTTCTGCACTTGCTCCGAGGCCCCGTTGGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCTCAGCCTCCTCCTTCTGCACTTGCTCCGAGGCCCCGTTGGTG  541

seq1  CCACAGTTGGGGGTCTTGGTTTCAAACACACAGTGTTTCTCCCGCAGGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTGGGGGTCTTGGTTTCAAACACACAGTGTTTCTCCCGCAGGTG  591

seq1  CTTCTCCAGCAGGATGACGGCGTGGAAGGCTTTGCTGCAGAACCTGCAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCAGCAGGATGACGGCGTGGAAGGCTTTGCTGCAGAACCTGCAGT  641

seq1  TGTACTTCTTGCTGTGGGTGGTGATGTGGCACTGCAGCTCCACCTCGGTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCTTGCTGTGGGTGGTGATGTGGCACTGCAGCTCCACCTCGGTG  691

seq1  CCAAACGACTCGCCGCAGAAGATGCACTTGTGCACTTTGCCTTGGTTCTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGACTCGCCGCAGAAGATGCACTTGTGCACTTTGCCTTGGTTCTC  741

seq1  CAAGTGGTTGTGCTTCACGTGCAGCTGCAGGTCGGTCTCGTTGCGGAAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGTTGTGCTTCACGTGCAGCTGCAGGTCGGTCTCGTTGCGGAAGT  791

seq1  CCCAGTTGCAGGACGTGCAGCGGTACACCTTCTTCTCGTTACTGTGCTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGCAGGACGTGCAGCGGTACACCTTCTTCTCGTTACTGTGCTTC  841

seq1  ACGGCCAAGTGCAGCTGGATAGAGACCTTGGAGTCGAACACTTCCTGGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCCAAGTGCAGCTGGATAGAGACCTTGGAGTCGAACACTTCCTGGCA  891

seq1  GAGTGTGCAGCGGAAGAAGACGAAGGTGTGCATGTCCAGCAGGTGCTTCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGCAGCGGAAGAAGACGAAGGTGTGCATGTCCAGCAGGTGCTTCT  941

seq1  GGAGGTCATCCACGGAGGTGAACTGCTTGTCACAGCTCTCACAGATGTAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCATCCACGGAGGTGAACTGCTTGTCACAGCTCTCACAGATGTAG  991

seq1  TAGGTTGAGGTGATCATAAAGTGGATGGTCACGTGCTTTAGCAAGGACTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGAGGTGATCATAAAGTGGATGGTCACGTGCTTTAGCAAGGACTC  1041

seq1  TTGGTTGGGGAATTC  1059
      |||||||||||||||
seq2  TTGGTTGGGGAATTC  1056

seq1: chr18_13842126_13843133
seq2: B6Ng01-013J04.g_66_1071

seq1  GAATTCAAGATGCTATACTTAGGCAGAAGTCCATGAAGGAATTAATTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATGCTATACTTAGGCAGAAGTCCATGAAGGAATTAATTGAT  50

seq1  ACGAGCCAGAAGTTGATTGCCATTTAAGTATTCAGCCTCCATCATTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCCAGAAGTTGATTGCCATTTAAGTATTCAGCCTCCATCATTGCCA  100

seq1  AGTTTCTCTCTTTGCAGAAAGAACCGAGCTTGCCTGCAAACTGGCTCGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCTCTTTGCAGAAAGAACCGAGCTTGCCTGCAAACTGGCTCGTT  150

seq1  CAGGATGTGAGCGCAAGATGGAATGCAACCTTTAATATGCTGCAACACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGTGAGCGCAAGATGGAATGCAACCTTTAATATGCTGCAACACCT  200

seq1  GCTTGGAAATAAAGGGGCTCTGTGCCTTTCCCCCTCAGGAGTTGACAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAAATAAAGGGGCTCTGTGCCTTTCCCCCTCAGGAGTTGACAGCT  250

seq1  GACTTCATTACAAAGGAATCTGGAGTGGTGGTGGAGGCTACTCCTGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATTACAAAGGAATCTGGAGTGGTGGTGGAGGCTACTCCTGCCTC  300

seq1  TGAGGCTCTCACCCAGAAATGAGGTGCTTACTGGAGCTGCACTTTGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTCTCACCCAGAAATGAGGTGCTTACTGGAGCTGCACTTTGGCCA  350

seq1  CTACCAGAGACTCCTGCTGGGTCCTTTTTATCTAGGCACATCCCTCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGAGACTCCTGCTGGGTCCTTTTTATCTAGGCACATCCCTCTTCC  400

seq1  TTGAACTCTTGTTTTTAGTGCCTTTAGTGGAAACTTCCTCCTGAAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCTTGTTTTTAGTGCCTTTAGTGGAAACTTCCTCCTGAAGAGGG  450

seq1  AGGAGGTAAGAGGCTTTGGGCTGCCGATGCTAAACGGAGGAGGGTTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTAAGAGGCTTTGGGCTGCCGATGCTAAACGGAGGAGGGTTTGCA  500

seq1  GGTGTTCGGTAATGGGATCTGGATTTCTACACTTCCTTTCTCCAGGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCGGTAATGGGATCTGGATTTCTACACTTCCTTTCTCCAGGGTTC  550

seq1  TGCTGCGCTGTGCCCAACAGGCATAAACAGACACCAAGTCAACGCTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCGCTGTGCCCAACAGGCATAAACAGACACCAAGTCAACGCTGTCC  600

seq1  CACTCTGTGGAGTAGCAGTTGAGGGTTCCCTAGATTCCTTAGTCCAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTGGAGTAGCAGTTGAGGGTTCCCTAGATTCCTTAGTCCAGTTC  650

seq1  TGAAACAGACTCAGCACTGGTCTGAGAAGCCAGGCTTAGAGATGGTGCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGACTCAGCACTGGTCTGAGAAGCCAGGCTTAGAGATGGTGCCG  700

seq1  TGACAGTCCATCTGGGCTGAGACACCCATTATGTTTATCAGGAATCAAGG  750
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGACAGTCCATCTGGGCTGAGACACCCATTATGTTTATCA-GAATCAAGG  749

seq1  TAAAATTTTGACCCTATCACCCATTTGTTTGATTTCCAAAGATTCACAAA  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAAAATTTTGACCCTATCACCCATTTGTTTGATTTTCAAAGATTCACAAA  799

seq1  TGGGTCTCCAG-TTTATTAGAAGACAGCAGATTTGACTTGCATCAGATAA  849
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  TGGGTCTCCAGTTTTATTAGAAGACAGCAGATTTGACTTGCATCAGAT-A  848

seq1  TCTTAATTTCTGTTATTACCATTCAGCACTTGAACCCTTTCCTGACCAGG  899
      ||||||||||||||||||||||||||||| || |||||||||||| ||||
seq2  TCTTAATTTCTGTTATTACCATTCAGCAC-TGGACCCTTTCCTGAACAGG  897

seq1  GTT-GGAAGCAGGCTAG-ACAGAACA-CACATCTAGTTAACTGCTGCTTA  946
      ||| ||| ||||||||| |||||||| |||||||||||||||||||||||
seq2  GTTGGGAGGCAGGCTAGAACAGAACACCACATCTAGTTAACTGCTGCTTA  947

seq1  CACTCATGTGTGATGATGAAAGTCACACGGCAACTTCAAATTTGCACATA  996
      ||| | |||||||||||||||||||||||||| || |||| |||| |  |
seq2  CAC-CCTGTGTGATGATGAAAGTCACACGGCACCTCCAAA-TTGC-CTAA  994

seq1  ATAACTATAAAA  1008
      ||||||||||||
seq2  ATAACTATAAAA  1006