BAC Information

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BAC

Clone NameB6Ng01-013P20
Chromosome18 (Build37)
Map Location 37,163,193 - 37,164,294
singlet/doubletsinglet
Overlap genePcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9
Upstream genePsd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427
Downstream genePcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013P20.bB6Ng01-013P20.g
ACCDH848663DH848664
length1,2041,074
definitionDH848663|Mus musculus domesticus DNA, BAC clone: B6Ng01-013P20, 5' end.DH848664|Mus musculus domesticus DNA, BAC clone: B6Ng01-013P20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcagacctttaaagaaggtctaacagcaatacccttgaaact
attccacaaaatacaaacagaaagaacactactcaaattatttctatgaa
gccactattacacttagaccaaaaccacacaaagccccaacaaataaaga
gaatgccagaccaatttcacttatgaatattggtgcaaaaatactcaata
aaattcttgcaaaccaaatccaagaacaaatcaaaatgatcattcaccat
gatcaagtaggtcaggaactgcagatgtaagtattaccaacagaatacaa
gagatagaagagagaatctcaggtgtagaagatatagtagtagagattga
tacaactgtcaaagaaaattcaaaacataaaaaattcctaacctaaagca
tccaggaaattcaggacacaatgaaaagaccaaatctaagaatacttgga
atagaggagaatgaagattttcagttcaaaggacctgaacatgtctttaa
caaaatcatagaagaaaatgtccccaacctaaagaaagtgatggacataa
aggtacaagaagcctatagaacatcaaataaatgggaccagaaaagaaaa
ttttctcatcacacaattatcaaaacactaaatgcatagagtatagaaag
aatattaaaatctccaagggaaaaatgccacataacatacaaaggtagac
ctatcagaattacactagtcttttcaatagatactatgaaagccagaaga
gcctggtcagtggtcatgcagactctaagagaacacaaatgccagccaag
gctgctatacccaggaaaaatcttaatcaacatagatggagaaaccaaaa
cattcaaggacaagacctaattcaaacagtatctatctaccaacccagcc
ttacagagaatcctggaagaaactccacacacgagatacatacaccaaag
aaagacagatatagctctctacaaagtcaaagcagagagctgcatcacat
aaatcacctacaaaacaaacatgcagacacagtcatcttcttaatatctc
ctcatatatgactcacctcacctataaaaagatataagctaacagctgaa
ttgcacaatccgacagcctgctgcttacaagaaccacctcaccaccgaaa
cgccattcaagtaggatgaagcctctcaggtatggtcagagcacacgaac
gcag
gaattcactcaacaacaactgtaggaaatttagagcacatttgtaaggct
atatcattttaaagcttttgttgagtcgctaaatatactcagggtgaatg
ttatttccacttcaatgtaaattatacttgttacttacttgaaaaaataa
tcaatcttcattcaaaaatattatcagcagttcaagttacatttctctgt
acttattttttttaaaaaattaatgtgaagaggctaggatataaacctca
ttttaagtctcattcactcaactttattgtcttgtttttatctgagctac
aaaaatatattaaattttacataaaaacctatagatggcaatgaagttta
tcagtatcactataaagaataaaatttttaatcattctcaaaattgtata
gaaccaattaattgacacctgaaccttgccaataatactatgtcattgaa
aaaactcaaatattcctcactaaaaagttattataaatgatatgcaagtt
aacaggtttgttttttttatgtgaatttcagttttcacttgaacactctt
acaaatagcgatttaatgactacaaatctgtaccaaagatatatagtttc
aattacctgtaattgtttttatgactaaagacataaatcctaaaacaata
tattgcactgttgaacaagagaaagttctgcctattgagttgactaaatt
cagaaaaagagaatcatggagaaaaaattaatttcctattttttgattga
aatgacccaatgtcttttggcataactccatattaaaacgaagaaccatt
cttatttttggattgaaaattacttcactgatcaagtacatataaaatgt
atttttagatttaaaattcgtgtatatagggtatttgcaaactagctagg
gtatcatgagagaggataaagagatcttaagagtaggaaatagatcagta
ctgtaatactgtatagacaaagaaaggagacaatcataatgagagacctc
agccagatgaggatagaggaggatggcaatcccatacctaaatactaacc
taaactttatttaataaaaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37163193_37164294
seq2: B6Ng01-013P20.g_68_1141 (reverse)

seq1  TTTATTTTTTATTTAAATAAAGTTTTTAGGTTAGTATTTAAGGTATTGGG  50
      |||||||||   ||||||||||  ||||||||||||||| ||||| ||||
seq2  TTTATTTTT--ATTAAATAAAG--TTTAGGTTAGTATTT-AGGTA-TGGG  44

seq1  ATTTGCCATCCCTTCTTCTTATCCCTTCATCTGGCTGGTGTCCTCTCTGT  100
      | |||||||||  || || |||||  |||||||||||  || |||||   
seq2  A-TTGCCATCC--TCCTC-TATCC--TCATCTGGCTGAGGT-CTCTC---  84

seq1  CTTTGGTTTGTCTCCCTTTCTTTTGTCTTATTACATGTATTACAGTACCT  150
       ||  | |||||| |||||| |||||||   |||| ||||||||||| ||
seq2  ATTATGATTGTCT-CCTTTC-TTTGTCT--ATACA-GTATTACAGTA-CT  128

seq1  GATCTATTTCCTACCTCTTTTAAGATCTCTTTATCCTCTCTCATGATACC  200
      |||||||||||||   || |||||||||||||||||||||||||||||||
seq2  GATCTATTTCCTA---CTCTTAAGATCTCTTTATCCTCTCTCATGATACC  175

seq1  CTAGCTAGTTTTGCAAATACCCTATATACACGAATTTTAAATCTAAAAAT  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAG-TTTGCAAATACCCTATATACACGAATTTTAAATCTAAAAAT  224

seq1  ACATTTTATATGTACTTGATCAGTGAAGTAATTTTTCAATCCAAAAATAA  300
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACATTTTATATGTACTTGATCAGTGAAGTAA-TTTTCAATCCAAAAATAA  273

seq1  GAATGGTTCTTCGTTTTAATATGGAGTTATGCCAAAAGACATTGGGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTTCTTCGTTTTAATATGGAGTTATGCCAAAAGACATTGGGTCAT  323

seq1  TTCAATCAAAAAATAGGAAATTAATTTTTTTCTCCATGATTCTCTTTTTC  400
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCAATCAAAAAATAGGAAATTAA-TTTTTTCTCCATGATTCTCTTTTTC  372

seq1  TGAATTTAGTCAACTCAATAGGCAGAACTTTCTCTTGTTCAACAGTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTAGTCAACTCAATAGGCAGAACTTTCTCTTGTTCAACAGTGCAA  422

seq1  TATATTGTTTTAGGATTTATGTCTTTAGTCATAAAAACAATTACAGGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTTTTAGGATTTATGTCTTTAGTCATAAAAACAATTACAGGTAA  472

seq1  TTGAAACTATATATCTTTGGTACAGATTTGTAGTCATTAAATCGCTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTATATATCTTTGGTACAGATTTGTAGTCATTAAATCGCTATTT  522

seq1  GTAAGAGTGTTCAAGTGAAAACTGAAATTCACATAAAAAAAACAAACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGTGTTCAAGTGAAAACTGAAATTCACATAAAAAAAACAAACCTG  572

seq1  TTAACTTGCATATCATTTATAATAACTTTTTAGTGAGGAATATTTGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGCATATCATTTATAATAACTTTTTAGTGAGGAATATTTGAGTT  622

seq1  TTTTCAATGACATAGTATTATTGGCAAGGTTCAGGTGTCAATTAATTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATGACATAGTATTATTGGCAAGGTTCAGGTGTCAATTAATTGGT  672

seq1  TCTATACAATTTTGAGAATGATTAAAAATTTTATTCTTTATAGTGATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACAATTTTGAGAATGATTAAAAATTTTATTCTTTATAGTGATACT  722

seq1  GATAAACTTCATTGCCATCTATAGGTTTTTATGTAAAATTTAATATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACTTCATTGCCATCTATAGGTTTTTATGTAAAATTTAATATATTT  772

seq1  TTGTAGCTCAGATAAAAACAAGACAATAAAGTTGAGTGAATGAGACTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTCAGATAAAAACAAGACAATAAAGTTGAGTGAATGAGACTTAA  822

seq1  AATGAGGTTTATATCCTAGCCTCTTCACATTAATTTTTTAAAAAAAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTTTATATCCTAGCCTCTTCACATTAATTTTTTAAAAAAAATAA  872

seq1  GTACAGAGAAATGTAACTTGAACTGCTGATAATATTTTTGAATGAAGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAGAAATGTAACTTGAACTGCTGATAATATTTTTGAATGAAGATT  922

seq1  GATTATTTTTTCAAGTAAGTAACAAGTATAATTTACATTGAAGTGGAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTTTTCAAGTAAGTAACAAGTATAATTTACATTGAAGTGGAAAT  972

seq1  AACATTCACCCTGAGTATATTTAGCGACTCAACAAAAGCTTTAAAATGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCACCCTGAGTATATTTAGCGACTCAACAAAAGCTTTAAAATGAT  1022

seq1  ATAGCCTTACAAATGTGCTCTAAATTTCCTACAGTTGTTGTTGAGTGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTTACAAATGTGCTCTAAATTTCCTACAGTTGTTGTTGAGTGAAT  1072

seq1  TC  1102
      ||
seq2  TC  1074