BAC Information

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BAC

Clone NameB6Ng01-014I16
Chromosome18 (Build37)
Map Location 43,047,107 - 43,272,280
singlet/doubletdoublet
Overlap genePpp2r2b, LOC100042046, LOC100042051
Upstream genePrelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037
Downstream geneEG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014I16.bB6Ng01-014I16.g
ACCDH849054DH849055
length1,0491,026
definitionDH849054|Mus musculus domesticus DNA, BAC clone: B6Ng01-014I16, 5' end.DH849055|Mus musculus domesticus DNA, BAC clone: B6Ng01-014I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,047,107 - 43,048,152)(43,271,246 - 43,272,280)
sequence
gaattcatggggacagctatcttagaaggcaagttagaaataccatctgg
aaacctggttgcttgtgtcatgtagcctagcaccctgtgcctttataaac
ttattataatttaaagacacagctttactgttatcacacaatcataacaa
aaattggcataatttgaacttgtaacattaatggagtagtaaaattatga
ttctaccacaggatgttatagaatatcacccccaaattgagtccaaacag
accaataccaatgccacatatggtataatattacatgccaaacatacaca
cataccagagagagagagagagagagagagagagagagagagagagagag
agagagaatgaaaataactgaaaggaaatatatagagagaattattgatg
gtaattaatctgaagctaatggtaaaattgcttttcttttgacttttctt
tccatactgaacactctagcatgtatgtacttggatctctcttaccagtg
cttttctgtacagcattagtcttactagaacacacccactgccacaaact
acagtgtaagagttgagttgttgggatagagaaaaacacacacacacatg
aaaacacacacacacacacatgaaaaacacatacaaacacacacacacac
acacacacacacacacacacacacacacacacactcactcacatacacct
tttgaaaacattcagctaacctctattttcaaacaagcgttttcttcctg
tttaccccatttcttctttcatttaccctgatatgtactggaatagacat
cgagagatttgggaacaaacacaactgagtctcaatatacacacaactca
agaataaaaagccagtgtgcctacacacatagttggcctccttggagcca
ctttattacaggtcagggatcttgacccatttgttgctgggtgtccaata
tggaatccaataattccattttttacaagtaatttatccgatggctggct
cattttggctctgagccttttctcattccccccaaaaatttctcttctg
gaattcaatctttgaaagaatttactaatgacatggctttgttcatctat
ctctaaggctgcccttcctttgaaggatggagatgaggaaggcagtctag
ggtaaggaaaaccaggtggctttgactaggacatgtgacaatcagtgatt
gtgactatgcaagttctgcaccccacaccaggtttagaaatcttccttga
agatggatgggaaaaggttgagccccataccaagaacacctgcctaggag
gctcaactctgcactgccatcatctccatcttcaccttggcatttagttc
tctgtagagcagaggaaaagcacatgtccaggtatgctctgctaaggcag
agatccagccactccatcaatctaatccaaacatctcctaagatgggcag
ggtttccctcatcatccacagggttcagtgcaggggccaagaggtaagag
tttcacatcactgaggaatgaattgtctcttccctgatgcttttactaag
aaacattattggtgaagaaggaaacttaaaagcatatgtgggaaatatgt
gtatggtgcaggctacagctaattaagctaatgaatgatcccgtattcca
taattttcaatttctgaggaaaggctgactgatgcagtggggggatgtta
gcagcatccagacaatgtttgcccaccctagtcagacacatcatccctcc
ttccttttagcaggaattcattgcatgagtcagaaccctggcagggatga
ttgagcaaacatggggggctgaagagacagtggtctttcatttgttttct
ttgtctctaatttatcatttcccttcttattccacaatagatgttcctat
gaagaatgaactctttcccaatggtttatgaccatggttttggttttggg
ttttatcctataataaaccttcaggcaaacacacaagctagcctaagtca
ctctctatcactatttaggaagagttgactccggtgtcaggattttttta
gacccatgaagaaaaaaggagaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_43047107_43048152
seq2: B6Ng01-014I16.b_47_1095

seq1  GAATTCATGGGGACAGCTATCTTAGAAGGCAAGTTAGAAATACCATCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGGACAGCTATCTTAGAAGGCAAGTTAGAAATACCATCTGG  50

seq1  AAACCTGGTTGCTTGTGTCATGTAGCCTAGCACCCTGTGCCTTTATAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGTTGCTTGTGTCATGTAGCCTAGCACCCTGTGCCTTTATAAAC  100

seq1  TTATTATAATTTAAAGACACAGCTTTACTGTTATCACACAATCATAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAATTTAAAGACACAGCTTTACTGTTATCACACAATCATAACAA  150

seq1  AAATTGGCATAATTTGAACTTGTAACATTAATGGAGTAGTAAAATTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGCATAATTTGAACTTGTAACATTAATGGAGTAGTAAAATTATGA  200

seq1  TTCTACCACAGGATGTTATAGAATATCACCCCCAAATTGAGTCCAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCACAGGATGTTATAGAATATCACCCCCAAATTGAGTCCAAACAG  250

seq1  ACCAATACCAATGCCACATATGGTATAATATTACATGCCAAACATACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACCAATGCCACATATGGTATAATATTACATGCCAAACATACACA  300

seq1  CATACCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  350

seq1  AGAGAGAATGAAAATAACTGAAAGGAAATATATAGAGAGAATTATTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAATGAAAATAACTGAAAGGAAATATATAGAGAGAATTATTGATG  400

seq1  GTAATTAATCTGAAGCTAATGGTAAAATTGCTTTTCTTTTGACTTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAATCTGAAGCTAATGGTAAAATTGCTTTTCTTTTGACTTTTCTT  450

seq1  TCCATACTGAACACTCTAGCATGTATGTACTTGGATCTCTCTTACCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACTGAACACTCTAGCATGTATGTACTTGGATCTCTCTTACCAGTG  500

seq1  CTTTTCTGTACAGCATTAGTCTTACTAGAACACACCCACTGCCACAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGTACAGCATTAGTCTTACTAGAACACACCCACTGCCACAAACT  550

seq1  ACAGTGTAAGAGTTGAGTTGTTGGGATAGAG-AAAACACACACACACATG  599
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACAGTGTAAGAGTTGAGTTGTTGGGATAGAGAAAAACACACACACACATG  600

seq1  AAAACACACACACACACACATG-AAAACACATACAAACACACACACACAC  648
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAACACACACACACACACATGAAAAACACATACAAACACACACACACAC  650

seq1  ACACACACACACACACACACACACACACACACACTCACTCACATACACCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACTCACTCACATACACCT  700

seq1  TTTGAAAACATTCAGCTAACCTCTA-TTTCAAACAAGCGTTTTCTTCCTG  747
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTGAAAACATTCAGCTAACCTCTATTTTCAAACAAGCGTTTTCTTCCTG  750

seq1  TTTACCCCA-TTCTTCTTTCATTTACCCTGATATGTACTGGAATAGACAT  796
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCCATTTCTTCTTTCATTTACCCTGATATGTACTGGAATAGACAT  800

seq1  CGAGAGATTTGGGAACAAACACAACTGAGTCTCAATATACACACAACTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGATTTGGGAACAAACACAACTGAGTCTCAATATACACACAACTCA  850

seq1  AGAA-AAAAAGCCAGTGTGCCTACACCACAAAGTT-GCCTCC-TAGAGCC  893
      |||| |||||||||||||||||||| |||| |||| |||||| | |||||
seq2  AGAATAAAAAGCCAGTGTGCCTACA-CACATAGTTGGCCTCCTTGGAGCC  899

seq1  ACTTTATTACAAGTCA-GGATCCTGACCCATTTG-TGCTGGTGTACCAAA  941
      ||||||||||| |||| ||||| ||||||||||| |||||| ||  | ||
seq2  ACTTTATTACAGGTCAGGGATCTTGACCCATTTGTTGCTGG-GTGTCCAA  948

seq1  TAATGGATTCCAAT-ATTCCA-TTTTTACAAGT-ATTTATCCGTATGTCT  988
      | ||||| |||||| |||||| ||||||||||| ||||||||| ||| ||
seq2  T-ATGGAATCCAATAATTCCATTTTTTACAAGTAATTTATCCG-ATGGCT  996

seq1  TGCTCATTTTTGCTCCTGTGCCTTTTCTCATTCCCTCCTCCAAATAATTT  1038
       ||||||||| ||| ||| ||||||||||||||||    || || |||||
seq2  GGCTCATTTTGGCT-CTGAGCCTTTTCTCATTCCC----CCCAAAAATTT  1041

seq1  CTCTTCTG  1046
      ||||||||
seq2  CTCTTCTG  1049

seq1: chr18_43271246_43272280
seq2: B6Ng01-014I16.g_70_1095 (reverse)

seq1  GACTATCTCCTTGTTTC-TCATGGGTTCTAAATAAAACTCCTGACAACTG  49
      |||| ||||||| |||| ||||||| |||||  |||| |||||||| |  
seq2  GACT-TCTCCTTTTTTCTTCATGGG-TCTAA--AAAAATCCTGACACC--  44

seq1  TGGAGTCAACCTCTTCCTAAAT-GTGATATGAAGAGTGACTTAGGGCTGG  98
       |||||||| |||||||||||| ||||||   ||||||||||| |||| |
seq2  -GGAGTCAA-CTCTTCCTAAATAGTGATA--GAGAGTGACTTA-GGCTAG  89

seq1  CTTGTGTGTTTTGCCTGAAGGTTTATTATAGGATAAAAAACCAAAAACCA  148
      |||||||| |||||||||||||||||||||||||  |||||| |||||||
seq2  CTTGTGTG-TTTGCCTGAAGGTTTATTATAGGAT--AAAACCCAAAACCA  136

seq1  AAAACATGGTCATAAAACAATGGGAAAGAGTTCATTC-TCAAAGGAACAT  197
      ||| |||||||||||| || ||||||||||||||||| ||| ||||||||
seq2  AAACCATGGTCATAAACCATTGGGAAAGAGTTCATTCTTCATAGGAACAT  186

seq1  CTATTGTGGAATAAGAAGGG-AATGATAAATTAGAGAC-AAGAAAACAAA  245
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  CTATTGTGGAATAAGAAGGGAAATGATAAATTAGAGACAAAGAAAACAAA  236

seq1  TGAAAGACCACTGTCTCTTCAG-CCCCCATGTTTGCTC-ATCATCCCTGC  293
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  TGAAAGACCACTGTCTCTTCAGCCCCCCATGTTTGCTCAATCATCCCTGC  286

seq1  CAGGGTTTCTGACTCATGCAATGAATTCCTGCTAAAAGGAAGGAGGGATG  343
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGG-TTCTGACTCATGCAATGAATTCCTGCTAAAAGGAAGGAGGGATG  335

seq1  ATGTGTCTGACTAGGGTGGGCCAACCATTGTCTGGATGCTGCTAACATCC  393
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  ATGTGTCTGACTAGGGTGGG-CAAACATTGTCTGGATGCTGCTAACATCC  384

seq1  CCCCACTGCATCAGTCAGCCTTTCCTCAGAAATTGAAAATTATGGAATAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTGCATCAGTCAGCCTTTCCTCAGAAATTGAAAATTATGGAATAC  434

seq1  GGGATCATTCATTAGCTTAATTAGCTGTAGCCTGCACCATACACATATTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCATTCATTAGCTTAATTAGCTGTAGCCTGCACCATACACATATTT  484

seq1  CCCACATATGCTTTTAAGTTTCCTTCTTCACCAATAATGTTTCTTAGTAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATATGCTTTTAAGTTTCCTTCTTCACCAATAATGTTTCTTAGTAA  534

seq1  AAGCATCAGGGAAGAGACAATTCATTCCTCAGTGATGTGAAACTCTTACC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCAGGGAAGAGACAATTCATTCCTCAGTGATGTGAAACTCTTACC  584

seq1  TCTTGGCCCCTGCACTGAACCCTGTGGATGATGAGGGAAACCCTGCCCAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCCCTGCACTGAACCCTGTGGATGATGAGGGAAACCCTGCCCAT  634

seq1  CTTAGGAGATGTTTGGATTAGATTGATGGAGTGGCTGGATCTCTGCCTTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAGATGTTTGGATTAGATTGATGGAGTGGCTGGATCTCTGCCTTA  684

seq1  GCAGAGCATACCTGGACATGTGCTTTTCCTCTGCTCTACAGAGAACTAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCATACCTGGACATGTGCTTTTCCTCTGCTCTACAGAGAACTAAA  734

seq1  TGCCAAGGTGAAGATGGAGATGATGGCAGTGCAGAGTTGAGCCTCCTAGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGTGAAGATGGAGATGATGGCAGTGCAGAGTTGAGCCTCCTAGG  784

seq1  CAGGTGTTCTTGGTATGGGGCTCAACCTTTTCCCATCCATCTTCAAGGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTTCTTGGTATGGGGCTCAACCTTTTCCCATCCATCTTCAAGGAA  834

seq1  GATTTCTAAACCTGGTGTGGGGTGCAGAACTTGCATAGTCACAATCACTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTAAACCTGGTGTGGGGTGCAGAACTTGCATAGTCACAATCACTG  884

seq1  ATTGTCACATGTCCTAGTCAAAGCCACCTGGTTTTCCTTACCCTAGACTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCACATGTCCTAGTCAAAGCCACCTGGTTTTCCTTACCCTAGACTG  934

seq1  CCTTCCTCATCTCCATCCTTCAAAGGAAGGGCAGCCTTAGAGATAGATGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCATCTCCATCCTTCAAAGGAAGGGCAGCCTTAGAGATAGATGA  984

seq1  ACAAAGCCATGTCATTAGTAAATTCTTTCAAAGATTGAATTC  1035
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCATGTCATTAGTAAATTCTTTCAAAGATTGAATTC  1026