BAC Information

Click to search

BAC

Clone NameB6Ng01-015M19
Chromosome18 (Build37)
Map Location 45,778,498 - 45,946,978
singlet/doubletdoublet
Overlap geneKcnn2
Upstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
Downstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015M19.bB6Ng01-015M19.g
ACCDH849961DH849962
length1,0081,019
definitionDH849961|Mus musculus domesticus DNA, BAC clone: B6Ng01-015M19, 5' end.DH849962|Mus musculus domesticus DNA, BAC clone: B6Ng01-015M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,778,498 - 45,779,504)(45,945,946 - 45,946,978)
sequence
gaattcttccttcctagttaacatgtcttcgtggtgtgcttcttggggtc
ttgaggccacactgttgaggtaaagaatgaagcttccctgttgttctcta
atacaatttcacagccaaatttcctagttctctggctcttggaatctttc
tgcccctcttccatgatgttccctgagccttggcttcacgagtggggttg
tagatataaccattagttctaagcctttctctctgcatgttgactcactg
tgtttttctcctatgttttgcaacaaagagaaccttctatgatgaagcaa
gagctacacttacctgtgaggagaaggagaggtgtttaaaatgcagttag
ggattatgctggtttagtaagtgaaggtagacagctctcctctaagatct
ataacctcaagatctagaagactcaaaagaaatgttgctgccttatatga
gaaattactgccttaactggaattttggagtcagtcatggcctctgccac
agcaccgattcaacagccccattgaacatacttcagaaggtgttaatcag
ctttcaaaaatgtgtccatggcacttatcactcaagaaaaaaagttgata
aaaatttagagactacagtaagttctttggaagaattagtcttatttatg
ggtaatcaaattgaagacattaaagtgggattaatcgtttccccgtcaag
cacaattttaatggatttgtcactctgcttccatataaggcttcgaagct
gacccgggcacaagttagttcccaccccaagggctataaaacaattctga
ggtagccataaacatgccatctttacatcaacaaattctagccattagtt
cagctcagatgtgcaactagattcttaggatctctcacttctgttgtctc
agacaggattttccgtctatatataatcattttgggataagcctaggagt
gtgccttattttggttcctttccttccagtcatcatctgaaggcctggag
aaatattc
gaattcttgggtcatcctaatacattttgaaattttctattgaaattgcc
ccacaggtatgtatattctctgtaaattccttcattttggaaattgtatt
taaatgttttctgaaagaaaactttacattttccttgcataaccagaaca
ccatgaatatttctttttaagaagtgagacacagaacaaaatgagtttgt
taaaaaccttctagtgtgtagcttgatatcttctgctaatgcattggcca
ctactaattttttaaatgtgacattataataatattgttttaagacttaa
tgcattctaccaatgattttatcatttcaggtatctaatcatattacaag
ttattttcataacttcccatctttgaaaacttaaaaattcaggtaaagaa
gacttcaagtttttttttctttttttattagatattttctttgtttacat
ttcaaatgttattccctttcctagtttcccctctgaaaatcccctatcct
ctccccccattcccctgctccccaacccacccactcccattcctggtcct
ggcattcccctatactggagcatagagccttcacaggaccaagggcctct
cctcccattgatgatcgactaggccatcctctgctacatatatagctaga
gccacaagttccagcatgtgtttttcattgactggtggtatagttccaag
gagctctgagggtactggttagttcatattgatgttccttctattgggtt
tcagtccccttcagctccctgcatatttctctgactccttcattggggac
cttgtgctctgtccaatggatgactgtgagcatccacttctatatttgcc
aggcactggcagagcctcgcagagacgacttcaggttttataatgaataa
aagtgttttatggtgtccctcatcctttaaacatctataaaaatggctgg
aatggaaaatgtgacttcaaaaaaaaaaaaaagaaacaaataacgaaatt
ccccctcagggaataggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45778498_45779504
seq2: B6Ng01-015M19.b_47_1054

seq1  GAATTCTTCCTTCCTAGTTAACATGTCTTCGTGGTGTGCTTCTTGGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTCCTAGTTAACATGTCTTCGTGGTGTGCTTCTTGGGGTC  50

seq1  TTGAGGCCACACTGTTGAGGTAAAGAATGAAGCTTCCCTGTTGTTCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCACACTGTTGAGGTAAAGAATGAAGCTTCCCTGTTGTTCTCTA  100

seq1  ATACAATTTCACAGCCAAATTTCCTAGTTCTCTGGCTCTTGGAATCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTTCACAGCCAAATTTCCTAGTTCTCTGGCTCTTGGAATCTTTC  150

seq1  TGCCCCTCTTCCATGATGTTCCCTGAGCCTTGGCTTCACGAGTGGGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTCTTCCATGATGTTCCCTGAGCCTTGGCTTCACGAGTGGGGTTG  200

seq1  TAGATATAACCATTAGTTCTAAGCCTTTCTCTCTGCATGTTGACTCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATAACCATTAGTTCTAAGCCTTTCTCTCTGCATGTTGACTCACTG  250

seq1  TGTTTTTCTCCTATGTTTTGCAACAAAGAGAACCTTCTATGATGAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTCCTATGTTTTGCAACAAAGAGAACCTTCTATGATGAAGCAA  300

seq1  GAGCTACACTTACCTGTGAGGAGAAGGAGAGGTGTTTAAAATGCAGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACACTTACCTGTGAGGAGAAGGAGAGGTGTTTAAAATGCAGTTAG  350

seq1  GGATTATGCTGGTTTAGTAAGTGAAGGTAGACAGCTCTCCTCTAAGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATGCTGGTTTAGTAAGTGAAGGTAGACAGCTCTCCTCTAAGATCT  400

seq1  ATAACCTCAAGATCTAGAAGACTCAAAAGAAATGTTGCTGCCTTATATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTCAAGATCTAGAAGACTCAAAAGAAATGTTGCTGCCTTATATGA  450

seq1  GAAATTACTGCCTTAACTGGAATTTTGGAGTCAGTCATGGCCTCTGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACTGCCTTAACTGGAATTTTGGAGTCAGTCATGGCCTCTGCCAC  500

seq1  AGCACCGATTCAACAGCCCCATTGAACATACTTCAGAAGGTGTTAATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGATTCAACAGCCCCATTGAACATACTTCAGAAGGTGTTAATCAG  550

seq1  CTTTCAAAAATGTGTCCATGGCACTTATCACTCAAG-AAAAAAGTTGATA  599
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTTCAAAAATGTGTCCATGGCACTTATCACTCAAGAAAAAAAGTTGATA  600

seq1  AAAATTTAGAGACTACAGTAAGTTCTTTGGAAGAATTAGTCTTATTTATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAGAGACTACAGTAAGTTCTTTGGAAGAATTAGTCTTATTTATG  650

seq1  GGTAATCAAATTGAAGACATTAAAGTGGGATTAATCGTTTCCCCGTCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATCAAATTGAAGACATTAAAGTGGGATTAATCGTTTCCCCGTCAAG  700

seq1  CACAATTTTAATGGATTTGTCACTCTGCTTCCATATAAGGCTTCGAAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTTAATGGATTTGTCACTCTGCTTCCATATAAGGCTTCGAAGCT  750

seq1  GACCCGGGCACAAGTTAGTTCCCACCCCAAGGGCTATAAAACAATTCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGGGCACAAGTTAGTTCCCACCCCAAGGGCTATAAAACAATTCTGA  800

seq1  GGTAGCCATAAACATGCCATCTTTACATCAACAAATTCTAGCCATTAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCATAAACATGCCATCTTTACATCAACAAATTCTAGCCATTAGTT  850

seq1  CAGCTCAGATGTGCAACTAGATTCTTAGGATCTCTCACTTCTTGTGTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  CAGCTCAGATGTGCAACTAGATTCTTAGGATCTCTCACTTCTGTTGTCTC  900

seq1  AGGACAGGATTTTCGGTCTATATATAATCAATTTGGGAATAAGCCTAGGA  949
      | |||||||||||| ||||||||||||||| |||||| ||||||||||||
seq2  A-GACAGGATTTTCCGTCTATATATAATCATTTTGGG-ATAAGCCTAGGA  948

seq1  GTGGTGCTTATTTTGGTTCCTGTCCTTCCAGTCATCATCTG-AGGCCT-G  997
      |||   ||||||||||||||| ||||||||||||||||||| |||||| |
seq2  GTGTGCCTTATTTTGGTTCCTTTCCTTCCAGTCATCATCTGAAGGCCTGG  998

seq1  AGAAATATTC  1007
      ||||||||||
seq2  AGAAATATTC  1008

seq1: chr18_45945946_45946978
seq2: B6Ng01-015M19.g_69_1087 (reverse)

seq1  TTCCTATTCCCTCGAGTGTGGATTTTCTGTTTATTTTGTATTTCTTTTTT  50
      |||||||||||| ||| | ||| ||||   |||||   | ||||  ||||
seq2  TTCCTATTCCCT-GAG-GGGGAATTTC--GTTATT---TGTTTC--TTTT  41

seq1  TTTTTTTTTTTGAGTCACCTTTTCCATTTCAGCCATTTTTATTAGTATGT  100
      ||||||||||  |||||| ||||||||| |||||||||||| ||| ||||
seq2  TTTTTTTTTTGAAGTCACATTTTCCATTCCAGCCATTTTTA-TAG-ATGT  89

seq1  TTAAAGGATGAGGGACACCATAAAAACACTTTTATTTCATTATAAAAACT  150
      ||||||||||||||||||||| |||||||||||| |||||||| ||||| 
seq2  TTAAAGGATGAGGGACACCAT-AAAACACTTTTA-TTCATTAT-AAAACC  136

seq1  TGAAGTCGTCTCCTGCGAGGCTCTGCCAGTGCCTGGCAAATATAGAAGTG  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCGTCT-CTGCGAGGCTCTGCCAGTGCCTGGCAAATATAGAAGTG  185

seq1  GATGCTCACAGTCATCCATTGGACAGAGCACAAGGTCCCCAATGAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCACAGTCATCCATTGGACAGAGCACAAGGTCCCCAATGAAGGAG  235

seq1  TCAGAGAAATATGCAGGGAGCTGAAGGGGACTGAAACCCAATAGAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAATATGCAGGGAGCTGAAGGGGACTGAAACCCAATAGAAGGAA  285

seq1  CATCAATATGAACTAACCAGTACCCTCAGAGCTCCTTGGAACTATACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATATGAACTAACCAGTACCCTCAGAGCTCCTTGGAACTATACCAC  335

seq1  CAGTCAATG-AAAACACATGCTGGAACTTGTGGCTCTAGCTATATATGTA  399
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAATGAAAAACACATGCTGGAACTTGTGGCTCTAGCTATATATGTA  385

seq1  GCAGAGGATGGCCTAGTCGATCATCAATGGGAGGAGAGGCCCTTGGTCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGATGGCCTAGTCGATCATCAATGGGAGGAGAGGCCCTTGGTCCT  435

seq1  GTGAAGGCTCTATGCTCCAGTATAGGGGAATGCCAGGACCAGGAATGGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGCTCTATGCTCCAGTATAGGGGAATGCCAGGACCAGGAATGGGA  485

seq1  GTGGGTGGGTTGGGGAGCAGGGGAATGGGGGGAGAGGATAGGGGATTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGGTTGGGGAGCAGGGGAATGGGGGGAGAGGATAGGGGATTTTC  535

seq1  AGAGGGGAAACTAGGAAAGGGAATAACATTTGAAATGTAAACAAAGAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGAAACTAGGAAAGGGAATAACATTTGAAATGTAAACAAAGAAAA  585

seq1  TATCTAATAAAAAAAGAAAAAAAAACTTGAAGTCTTCTTTACCTGAATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAATAAAAAAAGAAAAAAAAACTTGAAGTCTTCTTTACCTGAATTT  635

seq1  TTAAGTTTTCAAAGATGGGAAGTTATGAAAATAACTTGTAATATGATTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTTCAAAGATGGGAAGTTATGAAAATAACTTGTAATATGATTAG  685

seq1  ATACCTGAAATGATAAAATCATTGGTAGAATGCATTAAGTCTTAAAACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGAAATGATAAAATCATTGGTAGAATGCATTAAGTCTTAAAACAA  735

seq1  TATTATTATAATGTCACATTTAAAAAATTAGTAGTGGCCAATGCATTAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATAATGTCACATTTAAAAAATTAGTAGTGGCCAATGCATTAGC  785

seq1  AGAAGATATCAAGCTACACACTAGAAGGTTTTTAACAAACTCATTTTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATATCAAGCTACACACTAGAAGGTTTTTAACAAACTCATTTTGTT  835

seq1  CTGTGTCTCACTTCTTAAAAAGAAATATTCATGGTGTTCTGGTTATGCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTCACTTCTTAAAAAGAAATATTCATGGTGTTCTGGTTATGCAA  885

seq1  GGAAAATGTAAAGTTTTCTTTCAGAAAACATTTAAATACAATTTCCAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGTAAAGTTTTCTTTCAGAAAACATTTAAATACAATTTCCAAAA  935

seq1  TGAAGGAATTTACAGAGAATATACATACCTGTGGGGCAATTTCAATAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAATTTACAGAGAATATACATACCTGTGGGGCAATTTCAATAGAA  985

seq1  AATTTCAAAATGTATTAGGATGACCCAAGAATTC  1033
      ||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAATGTATTAGGATGACCCAAGAATTC  1019