BAC Information

Click to search

BAC

Clone NameB6Ng01-016B01
Chromosome18 (Build37)
Map Location 80,457,258 - 80,593,012
singlet/doubletdoublet
Overlap genePqlc1, Kcng2, D330025C20Rik
Upstream geneLOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik
Downstream geneCtdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016B01.bB6Ng01-016B01.g
ACCDH850150DH850151
length1,0591,071
definitionDH850150|Mus musculus domesticus DNA, BAC clone: B6Ng01-016B01, 5' end.DH850151|Mus musculus domesticus DNA, BAC clone: B6Ng01-016B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,457,258 - 80,458,346)(80,591,928 - 80,593,012)
sequence
gaattctactaacctccagtcttgagcagaagaggaaccatatactcaat
agcagactgccccgaggaaatcgaatttcttcttctttgagcatgactat
ttaacaaaccgtgaccaacagcaagtaaccaacaacctatctcagttctc
ggggccttcgtattgatataccctctgaaaagtccccagaattctaaatg
tcacagaatcacagaaaatgttctgctgctggcaaagtcacgctgctgtg
aacagtctgaagcagcgccataacccacacctgggattaaaacaacacgt
tcttagagtagttctgtttttctttttttttttaagaaaccaaaatttca
aaattgtcactacagcagactgttggcattaatttgcaaagaaatggcac
tttttaaaaatagctgtaaaaattgattatgttagacattgtttcctttt
tttttgccccttatgccatttggagttgggctttttgaaagtttgtgacc
tgttatggcttcctataaataaagccagccagattctcagctctgctcac
tggaacactattattgccttccttattgtggccctcgagctcattaggat
tgattttgatgtggtgtatgggaacttaaaccttgacttttttttttttt
ttctccgtagtcttaatagtaacaggagtcagtcagtttgtttgggaagc
tacgccttcagtctcctagcttcatggcgctgaggtggccctttcccatg
ttaacctccccgtgtaatctctgtgagcaaattgccagctagatagccag
ggaggaagtttctaggagcagagcagctaagggcttggttctgtctacca
ggagctctgccatcatgatttgaaagaaaaacttttgcaagaaaacactg
agttccaagacggtggtggctcatgatctggggtaatgtggtaccacaga
tcagggacatatctagaacagagctgtctgcagtgcagctctgtgtcact
cgtgctagcgaccctttctgttttcactctagctctcaccagctgcgtag
tctgggagc
gaattctccagccaagagtgccatgtagccctaggagtggagtgttcaag
gcaaagctgagaggctcagtgtaccttggcctccacagatattttccctc
agatgtcagtctgtgctttaagaagggagagtttagttacaggacacggc
ttctcaaacccgtacaggaacacatcatcagtaggtgaggcagaaggttt
gtatttccttcaggaggactcagatggcacaagggctcacacagagcatc
ctgaaggagatggcacaagggctcacacagaacctcctgaaggaacaagg
tgaggattcttttgtctttgctcttcaacacctgagccacaaggccagtg
agacaaatcaggcagagcctcttccattcctctgctcctaaagccatgag
acagaaggcatgcctaccatgtataaagttatcttcttagatcctgggac
acagcccccaagacaggactcaggggatctgttttcatacccaagacctc
cccacccagggacatggagcctctggctgacccagctctaggctcagctg
gactaatctgagattccacggggcctggacattctgctaggaaacacaag
gctaagttgttggtctgttgctgtgtgggaagccgttgcagagtggcagt
tacagagtggtagttacagagtggcagttacagagtggtagttacagagt
ggcagttggctactgctggccaccacacatacataggcagtaaaggttct
tttgccaagatgaggttttgagaattaaccaaagttaaccaatcagatga
gagacaagttaaccaatcagatgaaagacaagttaaccaatcagatgaga
gacaagttaaccaatcagatgagagagaacgcctctcctaggcctatata
agcagcaccagtctgggcttggggtcactttgcctctgcaatcaagctct
cccaataaacgtgtgtggaaggatcctgtgcagcgtcttctctgtcagtc
gagcgcgcacaagatgctgcaaagagtgtggtgtgtcatctctgctattt
gtagtctcccccccccccgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_80457258_80458346
seq2: B6Ng01-016B01.b_31_1089

seq1  GAATTCTACTAACCTCCAGTCTTGAGCAGAAGAGGAACCATATACTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTAACCTCCAGTCTTGAGCAGAAGAGGAACCATATACTCAAT  50

seq1  AGCAGACTGCCCCGAGGAAATCGAATTTCTTCTTCTTTGAGCATGACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTGCCCCGAGGAAATCGAATTTCTTCTTCTTTGAGCATGACTAT  100

seq1  TTAACAAACCGTGACCAACAGCAAGTAACCAACAACCTATCTCAGTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAACCGTGACCAACAGCAAGTAACCAACAACCTATCTCAGTTCTC  150

seq1  GGGGCCTTCGTATTGATATACCCTCTGAAAAGTCCCCAGAATTCTAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTTCGTATTGATATACCCTCTGAAAAGTCCCCAGAATTCTAAATG  200

seq1  TCACAGAATCACAGAAAATGTTCTGCTGCTGGCAAAGTCACGCTGCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAATCACAGAAAATGTTCTGCTGCTGGCAAAGTCACGCTGCTGTG  250

seq1  AACAGTCTGAAGCAGCGCCATAACCCACACCTGGGATTAAAACAACACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTGAAGCAGCGCCATAACCCACACCTGGGATTAAAACAACACGT  300

seq1  TCTTAGAGTAGTTCTGTTTTTCTTTTTTTTTTTAAGAAACCAAAATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGTAGTTCTGTTTTTCTTTTTTTTTTTAAGAAACCAAAATTTCA  350

seq1  AAATTGTCACTACAGCAGACTGTTGGCATTAATTTGCAAAGAAATGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCACTACAGCAGACTGTTGGCATTAATTTGCAAAGAAATGGCAC  400

seq1  TTTTTAAAAATAGCTGTAAAAATTGATTATGTTAGACATTGTTTCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAATAGCTGTAAAAATTGATTATGTTAGACATTGTTTCCTTTT  450

seq1  TTTTTGCCCCTTATGCCATTTGGAGTTGGGCTTTTTGAAAGTTTGTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCCCTTATGCCATTTGGAGTTGGGCTTTTTGAAAGTTTGTGACC  500

seq1  TGTTATGGCTTCCTATAAATAAAGCCAGCCAGATTCTCAGCTCTGCTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGCTTCCTATAAATAAAGCCAGCCAGATTCTCAGCTCTGCTCAC  550

seq1  TGGAACACTATTATTGCCTTCCTTATTGTGGCCCTCGAGCTCATTAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACTATTATTGCCTTCCTTATTGTGGCCCTCGAGCTCATTAGGAT  600

seq1  TGATTTTGATGTGGTGTATGGGAACTTAAACCTTGACTTTTTTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGATGTGGTGTATGGGAACTTAAACCTTGACTTTTTTTTTTTTT  650

seq1  TTCTCCGTAGTCTTAATAGTAACAGGAGTCAGTCAGTTTGTTTGGGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCGTAGTCTTAATAGTAACAGGAGTCAGTCAGTTTGTTTGGGAAGC  700

seq1  TACGCCTTCAGTCTCCTAGCTTCATGGCGCTGAGGTGGCCCTTTCCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCCTTCAGTCTCCTAGCTTCATGGCGCTGAGGTGGCCCTTTCCCATG  750

seq1  TTAACCTCCCCGTGTAATCTCTGTGAGCAAATTGCCAGCTAGATAGCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTCCCCGTGTAATCTCTGTGAGCAAATTGCCAGCTAGATAGCCAG  800

seq1  GGAGGAAGTTTCTAGGAGCAGAGCAGCTAAGGGCTTGGTTCTGTCTACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGTTTCTAGGAGCAGAGCAGCTAAGGGCTTGGTTCTGTCTACCA  850

seq1  GGAGCTCTGCCATCATGATTTGAAAGAAAAACTTTTTGCAAGAAAACACT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGAGCTCTGCCATCATGATTTGAAAGAAAAAC-TTTTGCAAGAAAACACT  899

seq1  GAGGTTCCAAGACGGTGGTGGCTCATGATCTGGGGTTAATGTGGTAACCA  950
      || |||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  GA-GTTCCAAGACGGTGGTGGCTCATGATCTGGGG-TAATGTGGT-ACCA  946

seq1  CAGGATCCAGGGACATATCCTAGGAACAGAGCTTGTCTTGCCAGTGCCAG  1000
      || ||| ||||||||||| ||| ||||||||| |||||   ||||| |||
seq2  CA-GAT-CAGGGACATAT-CTA-GAACAGAGC-TGTCT--GCAGTG-CAG  988

seq1  CTCCTGTGTCCACTCGGTGCCTAGGCGACCCTTTCCTTTGTTTTTCCCAC  1050
      || |||||| ||||| ||| ||| |||||||||||   ||||||   |||
seq2  CT-CTGTGT-CACTC-GTG-CTA-GCGACCCTTTC---TGTTTT---CAC  1027

seq1  TTCCTAAGCTTCCTCACGCAGCTGCGTAGTCTGTGGAGC  1089
      |  || ||||  ||||| ||||||||||||||| |||||
seq2  T--CT-AGCT--CTCAC-CAGCTGCGTAGTCTG-GGAGC  1059

seq1: chr18_80591928_80593012
seq2: B6Ng01-016B01.g_66_1136 (reverse)

seq1  GTCGGGGGGGGGGGGAGAACCTACAAATAAGCAAGAGATGGACACA-CAC  49
      ||| ||||||||||||||  |||||||| ||| |||||| |||||| |||
seq2  GTC-GGGGGGGGGGGAGA--CTACAAAT-AGC-AGAGAT-GACACACCAC  44

seq1  ACTTCTTTTGCAGCAATCTTGTGCGCGCTCGACTGGCCAGGAAGAAGGAC  99
      |||   |||||||| ||||||||||||||||||| | |||  |||| |||
seq2  ACT--CTTTGCAGC-ATCTTGTGCGCGCTCGACT-GACAG--AGAA-GAC  87

seq1  GCTGCAACAGGATCCTTCCACACACGTTTATTGGGAGAGCTTGATTGCAG  149
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGC-ACAGGATCCTTCCACACACGTTTATTGGGAGAGCTTGATTGCAG  136

seq1  AGGCAAAGTGACCCCAAGCCCAGAACTGGTGCTGCTTATATAGGCCTAGG  199
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGCAAAGTGACCCCAAGCCCAG-ACTGGTGCTGCTTATATAGGCCTAGG  185

seq1  AGAGGCGTTCTCTCTCATCTGATTGGTTAACTTGTCTCTCATCTGATTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCGTTCTCTCTCATCTGATTGGTTAACTTGTCTCTCATCTGATTGG  235

seq1  TTAACTTGTCTTTCATCTGATTGGTTAACTTGTCTCTCATCTGATTGGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGTCTTTCATCTGATTGGTTAACTTGTCTCTCATCTGATTGGTT  285

seq1  AACTTTGGTTAATTCTCAAAACCTCATCTTGGCAAAAGAACCTTTACTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGGTTAATTCTCAAAACCTCATCTTGGCAAAAGAACCTTTACTGC  335

seq1  CTATGTATGTGTGGTGGCCAGCAGTAGCCAACTGCCACTCTGTAACTACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATGTGTGGTGGCCAGCAGTAGCCAACTGCCACTCTGTAACTACC  385

seq1  ACTCTGTAACTGCCACTCTGTAACTACCACTCTGTAACTGCCACTCTGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAACTGCCACTCTGTAACTACCACTCTGTAACTGCCACTCTGCA  435

seq1  ACGGCTTCCCACACAGCAACAGACCAACAACTTAGCCTTGTGTTTCCTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTTCCCACACAGCAACAGACCAACAACTTAGCCTTGTGTTTCCTAG  485

seq1  CAGAATGTCCAGGCCCCGTGGAATCTCAGATTAGTCCAGCTGAGCCTAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTCCAGGCCCCGTGGAATCTCAGATTAGTCCAGCTGAGCCTAGA  535

seq1  GCTGGGTCAGCCAGAGGCTCCATGTCCCTGGGTGGGGAGGTCTTGGGTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTCAGCCAGAGGCTCCATGTCCCTGGGTGGGGAGGTCTTGGGTAT  585

seq1  GAAAACAGATCCCCTGAGTCCTGTCTTGGGGGCTGTGTCCCAGGATCTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGATCCCCTGAGTCCTGTCTTGGGGGCTGTGTCCCAGGATCTAA  635

seq1  GAAGATAACTTTATACATGGTAGGCATGCCTTCTGTCTCATGGCTTTAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAACTTTATACATGGTAGGCATGCCTTCTGTCTCATGGCTTTAGG  685

seq1  AGCAGAGGAATGGAAGAGGCTCTGCCTGATTTGTCTCACTGGCCTTGTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGAATGGAAGAGGCTCTGCCTGATTTGTCTCACTGGCCTTGTGG  735

seq1  CTCAGGTGTTGAAGAGCAAAGACAAAAGAATCCTCACCTTGTTCCTTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGTTGAAGAGCAAAGACAAAAGAATCCTCACCTTGTTCCTTCAG  785

seq1  GAGGTTCTGTGTGAGCCCTTGTGCCATCTCCTTCAGGATGCTCTGTGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTGTGTGAGCCCTTGTGCCATCTCCTTCAGGATGCTCTGTGTGA  835

seq1  GCCCTTGTGCCATCTGAGTCCTCCTGAAGGAAATACAAACCTTCTGCCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGTGCCATCTGAGTCCTCCTGAAGGAAATACAAACCTTCTGCCTC  885

seq1  ACCTACTGATGATGTGTTCCTGTACGGGTTTGAGAAGCCGTGTCCTGTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGATGATGTGTTCCTGTACGGGTTTGAGAAGCCGTGTCCTGTAA  935

seq1  CTAAACTCTCCCTTCTTAAAGCACAGACTGACATCTGAGGGAAAATATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCTCCCTTCTTAAAGCACAGACTGACATCTGAGGGAAAATATCT  985

seq1  GTGGAGGCCAAGGTACACTGAGCCTCTCAGCTTTGCCTTGAACACTCCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGCCAAGGTACACTGAGCCTCTCAGCTTTGCCTTGAACACTCCAC  1035

seq1  TCCTAGGGCTACATGGCACTCTTGGCTGGAGAATTC  1085
      ||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGGCTACATGGCACTCTTGGCTGGAGAATTC  1071