BAC Information

Click to search

BAC

Clone NameB6Ng01-016K22
Chromosome18 (Build37)
Map Location 79,340,853 - 79,509,517
singlet/doubletdoublet
Overlap geneLOC100039242
Upstream geneSlc14a2, EG620155, Setbp1
Downstream geneLOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016K22.bB6Ng01-016K22.g
ACCDH850580DH850581
length1,0761,161
definitionDH850580|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K22, 5' end.DH850581|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,340,853 - 79,341,932)(79,508,354 - 79,509,517)
sequence
gaattcacataatgaaattattttttcaatgtatactcaaaaccacaagt
actgtatctcgcaatataataagcctaatcacttatcaacatcatgtatc
ttcttaattttgtagcgtctgtactatcatttggtcactttacttctcct
ataccctttccacaggaacagttcacgcctacctataactacacatgcct
atggacagtctcaagaaaataaatcaagtggaaggcttgcttttatagaa
gccgtctcttctctcctctcagtgcatgcctctttgtatagagcttacag
ccaaaaatcaaataacccactgattgctgtatgcttattttattaggagc
attttgctaagtactttgtagggattatataatttcattcttataacgtc
cccgtgaagcagatattaacctcttctatagatcaaacaatcaaaaatgc
ttcttatttgagttgatcattggaagaatgatatcttgcatactggagga
attgcagggctaccctcttgcaggtaagattcacatactacttcgggaat
tcataacatagttgtattgttaagtgacttgaacttccaaagtgacaatc
tttaaaaccttcatgatttgaagcaatggaggtaaatttctcctccccac
agtatttgatgccctgacttccaggagctttgtggatccagattcctctc
attctgtagttttgctgtcttttgtatttcagaagcattctgttctagat
ggtctgtagagacagaaaacttgaaatggaccaagccatgcctgatatac
atccttttactctgctggccagaactctgagttcagccctgtataatttc
ctggttagggagtttactgtatgatagaaccgagcaaaacaagcatgcag
acttaaaaaaaaagattcatttttttttctgggctttttgtagctattta
catgagaggcatttcatcaatgtgtctgtgtcagactttcaggtcatgca
aattctctgcatgagtctcttgccttgcctcctatgttccagtcaaaaac
ttaaagaaagttttcatggtctggat
gaattctatttagatcagtaccccatttttaaattgggttatttggtttg
ttggtgtctaatttattgatttttttaatgtattttgggtatcagccttc
ttttggacatagggtttgtaaagatcttttcccattctgtaggctgccgt
tttgtcttattgatggtgtccctgttccatgaggtcctattaataattgt
tgatatcagtgctgagctgttggtgttctatacaggaagttgtctcctgt
gccaatgcatttaagactattagccactttctcttctatcatatttagtg
ccaaatatatccttatctcttacagaggtttagctatatcatataaaatc
tgaaataatggatattaaattctctgggacaccagatataaatcctatta
atattgaactgaatttatggaattaactggagagaatatttgtaagtttt
gatattattatgctcagattatggatatttttcattttccattgcagttt
aatttttttctgctgaagttccagaatgcaaaaagaagacatgaatgcta
acatcattttatcacataatagccaagttgtttcatagactcagaaaata
gcttcaaaaaagtagtaattctcgtgcttatcaaaaataagatcacagtg
atcctttttgttaaatatttgtatatttactcaaactcattcattacctg
ttactcctcctctgacattggtatacttctgcttcgtctttctttgcctt
tcagagcacaacactcaatgttcttccctgttgcttacaattcttcacca
ccttctccgctcacttctgattgactcactgacagctcttccagctgggc
cattctatgatttactgctaccacattttagtccgacaaatatgatatta
gtttccagtggttctgtcatttcattaccataactgctgtttacttagta
aatcccttgtctacaaccctaactacttttcctatctggattattttatt
ttttttccttttcctttttatagatttagtaattttattttgtgtttagt
aagtcctatctgcatgccaccctgcatgcacgaaaaggacatcaaatcta
ctttaatgattggagaccacatgtggtttctggggtatattgattcagga
ccttcggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_79340853_79341932
seq2: B6Ng01-016K22.b_41_1116

seq1  GAATTCACATAATGAAATTATTTTTTCAATGTATACTCAAAACCACAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAATGAAATTATTTTTTCAATGTATACTCAAAACCACAAGT  50

seq1  ACTGTATCTCGCAATATAATAAGCCTAATCACTTATCAACATCATGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATCTCGCAATATAATAAGCCTAATCACTTATCAACATCATGTATC  100

seq1  TTCTTAATTTTGTAGCGTCTGTACTATCATTTGGTCACTTTACTTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATTTTGTAGCGTCTGTACTATCATTTGGTCACTTTACTTCTCCT  150

seq1  ATACCCTTTCCACAGGAACAGTTCACGCCTACCTATAACTACACATGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTTTCCACAGGAACAGTTCACGCCTACCTATAACTACACATGCCT  200

seq1  ATGGACAGTCTCAAGAAAATAAATCAAGTGGAAGGCTTGCTTTTATAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGTCTCAAGAAAATAAATCAAGTGGAAGGCTTGCTTTTATAGAA  250

seq1  GCCGTCTCTTCTCTCCTCTCAGTGCATGCCTCTTTGTATAGAGCTTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCTCTTCTCTCCTCTCAGTGCATGCCTCTTTGTATAGAGCTTACAG  300

seq1  CCAAAAATCAAATAACCCACTGATTGCTGTATGCTTATTTTATTAGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATCAAATAACCCACTGATTGCTGTATGCTTATTTTATTAGGAGC  350

seq1  ATTTTGCTAAGTACTTTGTAGGGATTATATAATTTCATTCTTATAACGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTAAGTACTTTGTAGGGATTATATAATTTCATTCTTATAACGTC  400

seq1  CCCGTGAAGCAGATATTAACCTCTTCTATAGATCAAACAATCAAAAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGAAGCAGATATTAACCTCTTCTATAGATCAAACAATCAAAAATGC  450

seq1  TTCTTATTTGAGTTGATCATTGGAAGAATGATATCTTGCATACTGGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTGAGTTGATCATTGGAAGAATGATATCTTGCATACTGGAGGA  500

seq1  ATTGCAGGGCTACCCTCTTGCAGGTAAGATTCACATACTACTTCGGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGGCTACCCTCTTGCAGGTAAGATTCACATACTACTTCGGGAAT  550

seq1  TCATAACATAGTTGTATTGTTAAGTGACTTGAACTTCCAAAGTGACAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACATAGTTGTATTGTTAAGTGACTTGAACTTCCAAAGTGACAATC  600

seq1  TTTAAAACCTTCATGATTTGAAGCAATGGAGGTAAATTTCTCCTCCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACCTTCATGATTTGAAGCAATGGAGGTAAATTTCTCCTCCCCAC  650

seq1  AGTATTTGATGCCCTGACTTCCAGGAGCTTTGTGGATCCAGATTCCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGATGCCCTGACTTCCAGGAGCTTTGTGGATCCAGATTCCTCTC  700

seq1  ATTCTGTAGTTTTGCTGTCTTTTGTATTTCAGAAGCATTCTGTTCTAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAGTTTTGCTGTCTTTTGTATTTCAGAAGCATTCTGTTCTAGAT  750

seq1  GGTCTGTAGAGACAGAAAACTTGAAATGGACCAAGCCATGCCTGATATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTAGAGACAGAAAACTTGAAATGGACCAAGCCATGCCTGATATAC  800

seq1  ATCCTTTTACTCTGCTGGCCAGAACTCTGAGTTCAGCCCTGTATAATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTACTCTGCTGGCCAGAACTCTGAGTTCAGCCCTGTATAATTTC  850

seq1  CTGGTTAGGGAGTTTACTGTATGATAGAACCGAGCAAAAACAAGCATGCA  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTGGTTAGGGAGTTTACTGTATGATAGAACCGAGC-AAAACAAGCATGCA  899

seq1  GACTTAAAAAAAAAAGATTCATTTTTTTTTCTGGGCTTTTTGTAGCTATT  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTT-AAAAAAAAAGATTCATTTTTTTTTCTGGGCTTTTTGTAGCTATT  948

seq1  TACATGAGAGGCATTTCATCAATGTGTCTGTGTCAGACTCTCAGGTCATG  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACATGAGAGGCATTTCATCAATGTGTCTGTGTCAGACTTTCAGGTCATG  998

seq1  CAAATTCTCTGCATGAGTCTCCTGCCTTGCCTCCTATGTTCCAAGTCAAA  1050
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  CAAATTCTCTGCATGAGTCTCTTGCCTTGCCTCCTATGTTCC-AGTCAAA  1047

seq1  AACTTAAAGGAAAAGTTTTCAT-GTCTGGAT  1080
      |||||||||  ||||||||||| ||||||||
seq2  AACTTAAAG--AAAGTTTTCATGGTCTGGAT  1076

seq1: chr18_79508354_79509517
seq2: B6Ng01-016K22.g_68_1228 (reverse)

seq1  TTTTCCAGAGGTCCTGAGTTCAAT---CCCCAGCAACCACATGGTGGCTC  47
      ||||||  |||||||||  |||||   |||||| |||||||||  | |||
seq2  TTTTCCGAAGGTCCTGA-ATCAATATACCCCAGAAACCACATGTGGTCTC  49

seq1  ACAATCATTTATAGTAGGGTCTGATGCCCTTTTCTGGCATGCAGGTGTGC  97
       |||||| ||| |||| | | ||||| |||||||  |||||||||   ||
seq2  -CAATCA-TTAAAGTA-GATTTGATGTCCTTTTCGTGCATGCAGGGTGGC  96

seq1  ATGCAGATAGAGTACTACTATACACAAAATAAAATTAATAAATCTAATAA  147
      |||||||||| |   ||||| |||||||||||||||| ||||||| ||||
seq2  ATGCAGATAG-GACTTACTAAACACAAAATAAAATTACTAAATCT-ATAA  144

seq1  AAAAGAAAAAG-AAAAAAATAAAATAATCCAGAATAGG-AAAGTAGTTAG  195
      ||| ||||| | |||||||||||||||||||| ||||| |||||||||||
seq2  AAAGGAAAAGGAAAAAAAATAAAATAATCCAG-ATAGGAAAAGTAGTTAG  193

seq1  GTTTGTAGACAAGAGAATTTACTAAGTAAACAGCAGTTATGTAAATGAAA  245
      | ||||||||||| | |||||||||||||||||||||||||  |||||||
seq2  GGTTGTAGACAAG-GGATTTACTAAGTAAACAGCAGTTATGGTAATGAAA  242

seq1  TGACAGAACCACTGGAAACTAATATCATATTTGTCGGACTAAAATGTGGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAACCACTGGAAACTAATATCATATTTGTCGGACTAAAATGTGGT  292

seq1  AGCAGTAAATCATAGAATGGCCCAGCTGGAAGAGCTGTCAGTGAGTCAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAAATCATAGAATGGCCCAGCTGGAAGAGCTGTCAGTGAGTCAAT  342

seq1  CAGAAGTGAGCGGAGAAGGTGGTGAAGAATTGTAAGCAACAGGGAAGAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGAGCGGAGAAGGTGGTGAAGAATTGTAAGCAACAGGGAAGAAC  392

seq1  ATTGAGTGTTGTGCTCTGAAAGGCAAAGAAAGACGAAGCAGAAGTATACC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTGTTGTGCTCTGAAAGGCAAAGAAAGACGAAGCAGAAGTATACC  442

seq1  AATGTCAGAGGAGGAGTAACAGGTAATGAATGAGTTTGAGTAAATATACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGAGGAGGAGTAACAGGTAATGAATGAGTTTGAGTAAATATACA  492

seq1  AATATTTAACAAAAAGGATCACTGTGATCTTATTTTTGATAAGCACGAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAACAAAAAGGATCACTGTGATCTTATTTTTGATAAGCACGAGA  542

seq1  ATTACTACTTTTTTGAAGCTATTTTCTGAGTCTATGAAACAACTTGGCTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTACTTTTTTGAAGCTATTTTCTGAGTCTATGAAACAACTTGGCTA  592

seq1  TTATGTGATAAAATGATGTTAGCATTCATGTCTTCTTTTTGCATTCTGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGATAAAATGATGTTAGCATTCATGTCTTCTTTTTGCATTCTGGA  642

seq1  ACTTCAGCAGAAAAAAATTAAACTGCAATGGAAAATGAAAAATATCCATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGCAGAAAAAAATTAAACTGCAATGGAAAATGAAAAATATCCATA  692

seq1  ATCTGAGCATAATAATATCAAAACTTACAAATATTCTCTCCAGTTAATTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGCATAATAATATCAAAACTTACAAATATTCTCTCCAGTTAATTC  742

seq1  CATAAATTCAGTTCAATATTAATAGGATTTATATCTGGTGTCCCAGAGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTCAGTTCAATATTAATAGGATTTATATCTGGTGTCCCAGAGAA  792

seq1  TTTAATATCCATTATTTCAGATTTTATATGATATAGCTAAACCTCTGTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATCCATTATTTCAGATTTTATATGATATAGCTAAACCTCTGTAA  842

seq1  GAGATAAGGATATATTTGGCACTAAATATGATAGAAGAGAAAGTGGCTAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGGATATATTTGGCACTAAATATGATAGAAGAGAAAGTGGCTAA  892

seq1  TAGTCTTAAATGCATTGGCACAGGAGACAACTTCCTGTATAGAACACCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTAAATGCATTGGCACAGGAGACAACTTCCTGTATAGAACACCAA  942

seq1  CAGCTCAGCACTGATATCAACAATTATTAATAGGACCTCATGGAACAGGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGCACTGATATCAACAATTATTAATAGGACCTCATGGAACAGGG  992

seq1  ACACCATCAATAAGACAAAACGGCAGCCTACAGAATGGGAAAAGATCTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATCAATAAGACAAAACGGCAGCCTACAGAATGGGAAAAGATCTTT  1042

seq1  ACAAACCCTATGTCCAAAAGAAGGCTGATACCCAAAATACATTAAAAAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCTATGTCCAAAAGAAGGCTGATACCCAAAATACATTAAAAAAA  1092

seq1  TCAATAAATTAGACACCAACAAACCAAATAACCCAATTTAAAAATGGGGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAATTAGACACCAACAAACCAAATAACCCAATTTAAAAATGGGGT  1142

seq1  ACTGATCTAAATAGAATTC  1164
      |||||||||||||||||||
seq2  ACTGATCTAAATAGAATTC  1161