BAC Information

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BAC

Clone NameB6Ng01-017J04
Chromosome18 (Build37)
Map Location 48,873,678 - 48,988,776
singlet/doubletdoublet
Overlap genenone
Upstream geneA730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
Downstream geneDtwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017J04.bB6Ng01-017J04.g
ACCDH851220DH851221
length1,102735
definitionDH851220|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J04, 5' end.DH851221|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,873,678 - 48,874,778)(48,988,042 - 48,988,776)
sequence
gaattccagaaagaatagtgctattgagacctgagaagtaaaactgttag
gtagaagattaagtgcttaaagacgaatctatattataaaccaatgtcca
ggtcactaactatactatgatgtcatcataaaaatgaatagttgactgta
ctgatgacatcatcatcatcataatggatgaaaaggatcaattttattga
atatgtacaaagtcatttcattagttaattctccaaccgtttgttgagtg
ccaaacaggtgttagtcattatgctaagtgctagaacaaaggtcaacaca
gccaatagagtctctgcctttactgagctcaagtaaaacaggaagaaaga
gattgaatttggaatgaagaagaaaaaaatcatgcctaaaccactatggt
tgcctaagatttgtaggatgagatagattgctgttagactgaaaaagaaa
taaggtatattacatcaccagattataacaatgatgtactgactgataaa
atacatggcatgtcggggaaactctgtggctatggcagaagttgagagga
ctggtttgaagggcttaatttattccttatattagtcctgtacagtttag
tgggtttttttcttatttgttcctgtcctgactcatatagtatattttgc
tgcattaaaattaagtcattttctttatttgtatcatcttaaatagttat
agttgatttgcttatttgttcttctttagttaattaaatattaagtggac
agttagaatacaattcttattggtctgactttttttccttttttttttct
gttatgtttgttaatgataaccacacaccaacccaaaccagccttacata
ataaacaactacagaaaagaatacagctaagacctagtatataaacctat
cacacaaagtagattttagacagaccattcatatttttagtaaagcaatg
ctgtaaataataagaaaaaatttctttcatgattactgtaaaaaaaaaaa
ttcttgggaatttattcccaaaagtgcagtgacacacaaagcattctgga
ttgtaaactgtgttctatggatgactagttcttgattggaaagggaagag
ac
gaattcataaggaagaagctgagacagatgctaggcactggaaaaacact
aggcacaaacaggctgtagctaacaaagggcaagaagatttgctgtagga
cagggcagtgggtcaaacatttaaaaacatgggttcttcaaattcttaca
tctcccaggatgcccatctttctgaaaccatctacaagccccatgagtaa
caggaagaatttgtagataggagatgaccaaaaaacagacacttgcgaat
aaacaagaacaactgctaatcatttaaaattaagttttactgttaatcta
ggagtcatagtgtgaagtcatacaaaagatgatcattaagaacttccgga
atattggctattaagtcagtaaaaatcagaagcaaccctcaaaaacattt
tctcttcaaaagattaaacaaatgaatttactttgtagttaatttatttt
ttattatcttttatttttaacccttattgggggggggatcgaatatttca
catttgttgctttcatatttggatgaattgagtgctaggatcaatatttg
taaatagagttttttgttgtcatggttttagttcattagaccggtttcca
tctaaggaacactgtaaaactttgttttaaatctattgtaaggccagcct
tgtatacatatttattttctcccaatgatgataatttaattttcgaagtt
gatgctttcttaaaatcttcttgtgaagatgtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_48873678_48874778
seq2: B6Ng01-017J04.b_47_1148

seq1  GAATTCCAGAAAGAATAGTGCTATTGAGACCTGAGAAGTAAAACTGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAGAATAGTGCTATTGAGACCTGAGAAGTAAAACTGTTAG  50

seq1  GTAGAAGATTAAGTGCTTAAAGACGAATCTATATTATAAACCAATGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGATTAAGTGCTTAAAGACGAATCTATATTATAAACCAATGTCCA  100

seq1  GGTCACTAACTATACTATGATGTCATCATAAAAATGAATAGTTGACTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTAACTATACTATGATGTCATCATAAAAATGAATAGTTGACTGTA  150

seq1  CTGATGACATCATCATCATCATAATGGATGAAAAGGATCAATTTTATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGACATCATCATCATCATAATGGATGAAAAGGATCAATTTTATTGA  200

seq1  ATATGTACAAAGTCATTTCATTAGTTAATTCTCCAACCGTTTGTTGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACAAAGTCATTTCATTAGTTAATTCTCCAACCGTTTGTTGAGTG  250

seq1  CCAAACAGGTGTTAGTCATTATGCTAAGTGCTAGAACAAAGGTCAACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAGGTGTTAGTCATTATGCTAAGTGCTAGAACAAAGGTCAACACA  300

seq1  GCCAATAGAGTCTCTGCCTTTACTGAGCTCAAGTAAAACAGGAAGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAGAGTCTCTGCCTTTACTGAGCTCAAGTAAAACAGGAAGAAAGA  350

seq1  GATTGAATTTGGAATGAAGAAGAAAAAAATCATGCCTAAACCACTATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAATTTGGAATGAAGAAGAAAAAAATCATGCCTAAACCACTATGGT  400

seq1  TGCCTAAGATTTGTAGGATGAGATAGATTGCTGTTAGACTGAAAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAGATTTGTAGGATGAGATAGATTGCTGTTAGACTGAAAAAGAAA  450

seq1  TAAGGTATATTACATCACCAGATTATAACAATGATGTACTGACTGATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTATATTACATCACCAGATTATAACAATGATGTACTGACTGATAAA  500

seq1  ATACATGGCATGTCGGGGAAACTCTGTGGCTATGGCAGAAGTTGAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGGCATGTCGGGGAAACTCTGTGGCTATGGCAGAAGTTGAGAGGA  550

seq1  CTGGTTTGAAGGGCTTAATTTATTCCTTATATTAGTCCTGTACAGTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGAAGGGCTTAATTTATTCCTTATATTAGTCCTGTACAGTTTAG  600

seq1  TGGGTTTTTTTCTTATTTGTTCCTGTCCTGACTCATATAGTATATTTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTTTTCTTATTTGTTCCTGTCCTGACTCATATAGTATATTTTGC  650

seq1  TGCATTAAAATTAAGTCATTTTCTTTATTTGTATCATCTTAAATAGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAAAATTAAGTCATTTTCTTTATTTGTATCATCTTAAATAGTTAT  700

seq1  AGTTGATTTGCTTATTTGTTCTTCTTTAGTTAATTAAATATTAAGTGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTTGCTTATTTGTTCTTCTTTAGTTAATTAAATATTAAGTGGAC  750

seq1  AGTTAGAATACAATTCTTATTGGTCTGACTTTTTTTCCTTTTTTTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAATACAATTCTTATTGGTCTGACTTTTTTTCCTTTTTTTTTTCT  800

seq1  GTTATGTTTGTTAATGATAACCACACACCAACCCAAACCAGCCTTACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTTTGTTAATGATAACCACACACCAACCCAAACCAGCCTTACATA  850

seq1  ATAAACAACTACAGAAAGGAATACAGCTAAGACCTAGTATATAAACCTAT  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATAAACAACTACAGAAAAGAATACAGCTAAGACCTAGTATATAAACCTAT  900

seq1  CACAC-AAGTAGATTTTAAGACAGACCATTCATA-TTTTAGTAAAGCATT  948
      ||||| ||||||||||| |||||||||||||||| ||||||||||||| |
seq2  CACACAAAGTAGATTTT-AGACAGACCATTCATATTTTTAGTAAAGCAAT  949

seq1  GCTGTAAATAATAAGAAAAAATTTCTTTCATGATTACTGTAAAAAAAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAATAATAAGAAAAAATTTCTTTCATGATTACTGTAAAAAAAAAA  999

seq1  AATTCTGGGAATATATCCCAAAAAGTGCCAGTGACACACCATAGCATTCT  1048
      | |  ||||||| ||| || ||||||| |||||||||| || ||||||||
seq2  ATTCTTGGGAATTTATTCCCAAAAGTG-CAGTGACACA-CAAAGCATTCT  1047

seq1  GGAATGTAAACTGTG-TCTATGAGTGACTAGTTC-TGAGTGGAAAAGGGA  1096
      ||| ||||||||||| ||||||  |||||||||| ||| |||||| || |
seq2  GGATTGTAAACTGTGTTCTATGGATGACTAGTTCTTGATTGGAAAGGGAA  1097

seq1  GAGAC  1101
      |||||
seq2  GAGAC  1102

seq1: chr18_48988042_48988776
seq2: B6Ng01-017J04.g_70_804 (reverse)

seq1  AATACATC-TCAAAAGAAAGATTATAAGAAAAGCATCAACTTGCGAAAAT  49
      |||||||| ||| ||| |||||| |||| ||||||||||||| |||||||
seq2  AATACATCTTCACAAG-AAGATTTTAAG-AAAGCATCAACTT-CGAAAAT  47

seq1  TAAATTATCATCATTGGGAGAAAATAAATATGTATACAAGGCTGGCCTTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATCATCATTGGGAGAAAATAAATATGTATACAAGGCTGGCCTTA  97

seq1  CAATAGATTTAAAACAAAG-TTTACAGTGTTCCTTAGATGGAAACCGGTC  148
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAATAGATTTAAAACAAAGTTTTACAGTGTTCCTTAGATGGAAACCGGTC  147

seq1  TAATGAACTAAAACCATGACAACAAAAAACTCTATTTAC-AATATTGATC  197
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAATGAACTAAAACCATGACAACAAAAAACTCTATTTACAAATATTGATC  197

seq1  CTAGCACTCAATTCATCCAAATATGAAAGCAACAAATGTGAAATATTCGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTCAATTCATCCAAATATGAAAGCAACAAATGTGAAATATTCGA  247

seq1  TCCCCCCCCCAATAAGGGTTAAAAATAAAAGATAATAAAAAATAAATTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCAATAAGGGTTAAAAATAAAAGATAATAAAAAATAAATTAA  297

seq1  CTACAAAGTAAATTCATTTGTTTAATCTTTTGAAGAGAAAATGTTTTTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTAAATTCATTTGTTTAATCTTTTGAAGAGAAAATGTTTTTGA  347

seq1  GGGTTGCTTCTGATTTTTACTGACTTAATAGCCAATATTCCGGAAGTTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCTTCTGATTTTTACTGACTTAATAGCCAATATTCCGGAAGTTCT  397

seq1  TAATGATCATCTTTTGTATGACTTCACACTATGACTCCTAGATTAACAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATCATCTTTTGTATGACTTCACACTATGACTCCTAGATTAACAGT  447

seq1  AAAACTTAATTTTAAATGATTAGCAGTTGTTCTTGTTTATTCGCAAGTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAATTTTAAATGATTAGCAGTTGTTCTTGTTTATTCGCAAGTGT  497

seq1  CTGTTTTTTGGTCATCTCCTATCTACAAATTCTTCCTGTTACTCATGGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTTGGTCATCTCCTATCTACAAATTCTTCCTGTTACTCATGGGG  547

seq1  CTTGTAGATGGTTTCAGAAAGATGGGCATCCTGGGAGATGTAAGAATTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGATGGTTTCAGAAAGATGGGCATCCTGGGAGATGTAAGAATTTG  597

seq1  AAGAACCCATGTTTTTAAATGTTTGACCCACTGCCCTGTCCTACAGCAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCATGTTTTTAAATGTTTGACCCACTGCCCTGTCCTACAGCAAA  647

seq1  TCTTCTTGCCCTTTGTTAGCTACAGCCTGTTTGTGCCTAGTGTTTTTCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGCCCTTTGTTAGCTACAGCCTGTTTGTGCCTAGTGTTTTTCCA  697

seq1  GTGCCTAGCATCTGTCTCAGCTTCTTCCTTATGAATTC  735
      ||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTAGCATCTGTCTCAGCTTCTTCCTTATGAATTC  735