BAC Information

Click to search

BAC

Clone NameB6Ng01-018A05
Chromosome18 (Build37)
Map Location 55,655,289 - 55,817,699
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545257, LOC100042489, Zfp608, LOC100043089
Downstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018A05.bB6Ng01-018A05.g
ACCDH851528DH851529
length7611,144
definitionDH851528|Mus musculus domesticus DNA, BAC clone: B6Ng01-018A05, 5' end.DH851529|Mus musculus domesticus DNA, BAC clone: B6Ng01-018A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,655,289 - 55,656,047)(55,816,542 - 55,817,699)
sequence
gaattcatattaggatgtgtagtgagttcgggctgagcctccagcactcc
ctaaagctcctgctcaaattcttcttatcgactgtgagttgcacaatctc
atcgttatctctcagagttagaaggatggcataaaaagatcaaggggtca
ccaggactactcaggtagcagcagcagcagcagcagcagcagcagcagca
gcagcagcagcagcagcagcagcaacctcaggttgaacttaagtagatgc
ttcagctcatagtcctaacaattacattatagagattatgaaggcaggat
gagaaggcaaaggcaagaagtcttggtgacctctacaactgtgccacatc
cccagggaagtatcccaaagagttatcttaatacagccaagtcacatttc
ccctcttttagttttgttgttgttttttgtttgtttgtttgtttgttcgt
ttctgtttgttgtgctataatgtattagaatgtcatctgtgatggtgatg
gtggaagaaaaagagaaacaaactcaattcacgctgtgtgttttttgttt
gtttgttttgttttgttttgtttgtttgtttgtttgttttgtttttagga
tgatccatgcttatctaagaggatacctgtctaaacacaatcctcatata
tcccttcaaagtaatgccacagcctgaattttttaccaccaccaaaaaca
taggtggctacctacatgattatattcgggttgctatttactagagtcct
tctagtgatta
gaattcagatagaacgcaatgcagcactcaagtaaaccacgactctatcc
accacaggcaaacttgctgtatgatgtacaggcaccagtatgatgtaaca
atgaacatgaaaacaaatattccatgcacctctctacacaactatgtgtt
tttagaactcatgatgatggtttatttgtcagactcaatagacgcatgga
gcaatttgtataaacaatttgcagattctgagtcagttatcagttatgtt
tgtttggcaaaaactcaagtttcctgcttatttattttatttttacatat
ttagtcaggaaatttgtttaaaatatcaaacaactgagtgaaaagtaaaa
tggcttgtcagttttctatctcggtgattctaaaacttctatgagatctt
ataggaaagcggtgggccctaaggcccttaagaagtgatagtttctatgg
agttgcttcttcataccagaactcatagtccttgagaccttgtattgttt
cacacaacacacacataaataaaaaaaaatgggttcatagggtcagaaaa
tgaaattagcataacactttctaaaggtaaagaagtaccagtattctgtg
tccttccatgagttgtattttctgatagagtatgagagaagagcttgcat
gactcacacattgtaatgataattaccagtcaattatggccttcacagta
gcccgcatccagcataactccaatgtgaactttggcgtaaatatgatagt
ttttcaataaagctttatggacccggtaattaagcacatgcgccacttac
cagttgtaaacctagtttgaagacttgataaaaagaaaaatattcatgct
actgattgtttttttttaaagcgattgttgtagaaataacaacataaaca
cacaaacaaacaactccaagttatagatgtgatttatgaccagcaacaca
tcagaggcatctgctgcagccgcagacttctgccaggtaaactttgtaaa
atcttgtgagcagcagttttagaatgtgctctgccttcataataggttag
cttcatggaggttggaagggagtacaaaaagaaaataaagcatctggtca
taaactggggacactccaccaggtttaactgttatctgggatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_55655289_55656047
seq2: B6Ng01-018A05.b_46_806

seq1  GAATTCATATTAGGATGTGTAGTGAGTTCGGGCTGAGCCTCCAGCACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTAGGATGTGTAGTGAGTTCGGGCTGAGCCTCCAGCACTCC  50

seq1  CTAAAGCTCCTGCTCAAATTCTTCTTATCGACTGTGAGTTGCACAATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCTCCTGCTCAAATTCTTCTTATCGACTGTGAGTTGCACAATCTC  100

seq1  ATCGTTATCTCTCAGAGTTAGAAGGATGGCATAAAAAGATCAAGGGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTATCTCTCAGAGTTAGAAGGATGGCATAAAAAGATCAAGGGGTCA  150

seq1  CCAGGACTACTCAGGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTACTCAGGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA  200

seq1  GCAGCAGCAGCAGCAGCAGCAGCAACCTCAGGTTGAACTTAAGTAGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCAGCAGCAGCAGCAGCAACCTCAGGTTGAACTTAAGTAGATGC  250

seq1  TTCAGCTCATAGTCCTAACAATTACATTATAGAGATTATGAAGGCAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCATAGTCCTAACAATTACATTATAGAGATTATGAAGGCAGGAT  300

seq1  GAGAAGGCAAAGGCAAGAAGTCTTGGTGACCTCTACAACTGTGCCACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCAAAGGCAAGAAGTCTTGGTGACCTCTACAACTGTGCCACATC  350

seq1  CCCAGGGAAGTATCCCAAAGAGTTATCTTAATACAGCCAAGTCACATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAAGTATCCCAAAGAGTTATCTTAATACAGCCAAGTCACATTTC  400

seq1  CCCTCTTTTAGTTTTGTTGTTGTTTTTTGTTTGTTTGTTTGTTTGTTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTTAGTTTTGTTGTTGTTTTTTGTTTGTTTGTTTGTTTGTTCGT  450

seq1  TTCTGTTTGTTGTGCTATAATGTATTAGAATGTCATCTGTGATGGTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTGTTGTGCTATAATGTATTAGAATGTCATCTGTGATGGTGATG  500

seq1  GTGGAAGAAAAAGAGAAACAAACTCAATTCACGCTGTGTGTTTTTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGAAAAAGAGAAACAAACTCAATTCACGCTGTGTGTTTTTTGTTT  550

seq1  GTTTGTTTTGTTTTGTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTGTTTTGTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTTAGGA  600

seq1  TGATCCATGCTTATCTAAGAGGATACCTGTCTAAACACAATCCTCATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATGCTTATCTAAGAGGATACCTGTCTAAACACAATCCTCATATA  650

seq1  TCCCTTCAAAGTAATGCCACAGCCTGAA-TTTTTACCACCACCAAAAACA  699
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCCTTCAAAGTAATGCCACAGCCTGAATTTTTTACCACCACCAAAAACA  700

seq1  TAGGTGGCTACCTACATGATTATATTCGGGTTGCTATTTACTAGAGT-CT  748
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGGTGGCTACCTACATGATTATATTCGGGTTGCTATTTACTAGAGTCCT  750

seq1  TCTAGTGATTA  759
      |||||||||||
seq2  TCTAGTGATTA  761

seq1: chr18_55816542_55817699
seq2: B6Ng01-018A05.g_70_1213 (reverse)

seq1  AGATCCCAGAGTAGACAGTTAAACCTGCTGAGTTGTTCCCAGTTTATGGA  50
      |||||||||| || ||||||||||||| ||   ||| |||||||||| ||
seq2  AGATCCCAGA-TA-ACAGTTAAACCTGGTGGAGTGTCCCCAGTTTAT-GA  47

seq1  CCAGTATGCCTCTATTTCTCTTTTGTTACTCCCTTCCAACCTCCCATGAA  100
      |||| ||| || ||||| ||||||  |||||||||||||||| |||||||
seq2  CCAG-ATG-CTTTATTT-TCTTTTTGTACTCCCTTCCAACCT-CCATGAA  93

seq1  GCTAACCTAATATG-ATGCAGAGCACATTCTGAAAACTGCTGCTCACAAG  149
      ||||||||| |||| | |||||||||||||| ||||||||||||||||||
seq2  GCTAACCTATTATGAAGGCAGAGCACATTCT-AAAACTGCTGCTCACAAG  142

seq1  ATTTTACAAAGTTCTACCTGGCAGAAGTCTGCGGCTGCAGCAGATGCCTC  199
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAAAGTT-TACCTGGCAGAAGTCTGCGGCTGCAGCAGATGCCTC  191

seq1  TGGATGTGTTGCTGGTCATAAATCACATCTATAAACCTTGGAGTTGTTTG  249
      | ||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  T-GATGTGTTGCTGGTCATAAATCACATCTATAA--CTTGGAGTTGTTTG  238

seq1  TTTGTGTGTTTATGTTGTTATTTCTACAACAATCGCTTTTAAAAAAAAAA  299
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  TTTGTGTGTTTATGTTGTTATTTCTACAACAATCGCTTT--AAAAAAAAA  286

seq1  CAATCAGTAGCATGAATATTTTTCTTTTTTATCAAGTCTTCAAACTAGGT  349
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAATCAGTAGCATGAATATTTTTC-TTTTTATCAAGTCTTCAAACTAGGT  335

seq1  TTACAACTGGTAAGTGGCGCATGTGCTTAATTACCGGGTCCATAAAGCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTGGTAAGTGGCGCATGTGCTTAATTACCGGGTCCATAAAGCTT  385

seq1  TATTGAAAAACTATCATATTTACGCCAAAGTTCACATTGGAGTTATGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAAAACTATCATATTTACGCCAAAGTTCACATTGGAGTTATGCTG  435

seq1  GATGCGGGCTACTGTGAAGGCCATAATTGACTGGTAATTATCATTACAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGGGCTACTGTGAAGGCCATAATTGACTGGTAATTATCATTACAAT  485

seq1  GTGTGAGTCATGCAAGCTCTTCTCTCATACTCTATCAGAAAATACAACTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTCATGCAAGCTCTTCTCTCATACTCTATCAGAAAATACAACTC  535

seq1  ATGGAAGGACACAGAATACTGGTACTTCTTTACCTTTAGAAAGTGTTATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGGACACAGAATACTGGTACTTCTTTACCTTTAGAAAGTGTTATG  585

seq1  CTAATTTCATTTTCTGACCCTATGAACCCATTTTTTTTTATTTATGTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCATTTTCTGACCCTATGAACCCATTTTTTTTTATTTATGTGTG  635

seq1  TGTTGTGTGAAACAATACAAGGTCTCAAGGACTATGAGTTCTGGTATGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTGAAACAATACAAGGTCTCAAGGACTATGAGTTCTGGTATGAA  685

seq1  GAAGCAACTCCATAGAAACTATCACTTCTTAAGGGCCTTAGGGCCCACCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAACTCCATAGAAACTATCACTTCTTAAGGGCCTTAGGGCCCACCG  735

seq1  CTTTCCTATAAGATCTCATAGAAGTTTTAGAATCACCGAGATAGAAAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTATAAGATCTCATAGAAGTTTTAGAATCACCGAGATAGAAAACT  785

seq1  GACAAGCCATTTTACTTTTCACTCAGTTGTTTGATATTTTAAACAAATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCCATTTTACTTTTCACTCAGTTGTTTGATATTTTAAACAAATTT  835

seq1  CCTGACTAAATATGTAAAAATAAAATAAATAAGCAGGAAACTTGAGTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTAAATATGTAAAAATAAAATAAATAAGCAGGAAACTTGAGTTTT  885

seq1  TGCCAAACAAACATAACTGATAACTGACTCAGAATCTGCAAATTGTTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAACAAACATAACTGATAACTGACTCAGAATCTGCAAATTGTTTAT  935

seq1  ACAAATTGCTCCATGCGTCTATTGAGTCTGACAAATAAACCATCATCATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGCTCCATGCGTCTATTGAGTCTGACAAATAAACCATCATCATG  985

seq1  AGTTCTAAAAACACATAGTTGTGTAGAGAGGTGCATGGAATATTTGTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAAAAACACATAGTTGTGTAGAGAGGTGCATGGAATATTTGTTTT  1035

seq1  CATGTTCATTGTTACATCATACTGGTGCCTGTACATCATACAGCAAGTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCATTGTTACATCATACTGGTGCCTGTACATCATACAGCAAGTTT  1085

seq1  GCCTGTGGTGGATAGAGTCGTGGTTTACTTGAGTGCTGCATTGCGTTCTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGTGGATAGAGTCGTGGTTTACTTGAGTGCTGCATTGCGTTCTA  1135

seq1  TCTGAATTC  1158
      |||||||||
seq2  TCTGAATTC  1144