BAC Information

Click to search

BAC

Clone NameB6Ng01-018C18
Chromosome18 (Build37)
Map Location 31,087,408 - 31,257,153
singlet/doubletdoublet
Overlap geneRit2
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018C18.bB6Ng01-018C18.g
ACCDH851647DH851648
length1,0221,182
definitionDH851647|Mus musculus domesticus DNA, BAC clone: B6Ng01-018C18, 5' end.DH851648|Mus musculus domesticus DNA, BAC clone: B6Ng01-018C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,087,408 - 31,088,429)(31,255,962 - 31,257,153)
sequence
gaattcaattggtaaacgaagagataggtgctcaatggtgataatgaaag
atggtcatcatatgcagattgttcctaaaatatgaaagaatagaacatgc
aaaccaagaataactcttgatctgcatgtaggataaatagtgctgacaat
cctatgttgttccttgagttccatttcatcatgaagctatagtagaatcc
cattattggaaggaggtcaggtgatgtcaattgcatcttttatgtgaaaa
acaatggagctactaaaatcttacagaacagaatggggtgaatagcctgt
acttgcttataaacatagtattttatttgctttttaaatacacttcagta
atacaaaaattgacaaagtctggatctcaatgcaattttgattataatat
agaggaggcagatacatgaattcatacagatattagtggctcctacattc
tccaagaattcatgaattagaaacacgttgggtgaaatcagtttccaatg
cttaggaaagatctctttcagtggatatttcatcaattgctctgtccatc
tggaacaggattctgaggaagagactggatctccctgctacttaatttag
tgaatcaggcagtcttcttagacacagaactccattatggatgaagagtg
cacactaaaaaatttatcatcctttaacaaatgcataagattggaaaggg
aaaatctaagggaagtgactaagaaaaaaaaggcgttacaagtgcaaatg
tggataatagatgcaaaaaagcattttaaagcactttgagctcctttttg
gagaaggaatagtgacacctgggaaagtggtgttaaataaataacaccat
aaaaacccaacaggagcccagatgcactgagcacagatccacagagttga
attaatgaggacatattgctttaaatcatttgacattctgaatgttattt
gtcactgaagtgcaccccaatgttgtgtgtgtgtgtgtatatatggatat
atgcatatatatttatacatac
gaattcaagtgaatgaaatgcaaagaatccactaactgtctctaaataga
ggtactttggatgcagttgttttatgactccaacttgtatagaacctgct
tctcactgcacctaagaagctgcttgaacatccaagggtatctgaggctc
acataaatccaaccattagagaaaagtcatcctgcaagaaaatggttagc
tggaactaagacctaaagcatgaacaggctcataggtatataactagtta
taatcaagatacataggtaaaacaaatctgacagaaagaaatatcagaat
catgagtatagaaagatatttagagttgtctgaagttgtttaagtccaaa
tgaaaaaaacaccttaaacttatagatcaatttatcattaaactacgcta
aatactattatgaacaagtatgcaaaataaaaattcagggactccaggag
taaagggtatcatttctgtgctgttgttgacaaaacaatgaatcctgaaa
ttattaccaattccatgttacattctacaaaaaccaagaagaattatgta
attctcaacagggaaagcagggtaagaagtccatggttcaggcaggagac
ttacacacgatgtggggacatgtaaaaaagctaaaattgcatatgcatcc
atttgaagagactctaactgaactaacaaagcgtgttcattatttccctg
tgcttaactcattaagatccccagtgcatacctctcccttctgcctgtga
taagctccagctttatttagatgattccagagtgtggagtatgtattcca
atactaatcacggtattcttgatttaaaaaaaaatagaaaagagttgagt
aattaaatgataactttgcacaaggtatcatgtggatttgtatttataaa
actttattttccaattattccagaacataatgtagaaaatgatgaaattg
agacttgatttgaaacctcattattggcgtgaaactgcaattgttgatac
aaggctacacagcttcaatgatttattttttaatccttttcaataggaag
gaagacaggcaggcagtctgcagcagccgagtgactgtaggaaactctta
gttagtgcacttgggtcatgagttttgtaggggctattgactccgcgatc
atggtcacaccaaacggtttctgtttcctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31087408_31088429
seq2: B6Ng01-018C18.b_42_1063

seq1  GAATTCAATTGGTAAACGAAGAGATAGGTGCTCAATGGTGATAATGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGGTAAACGAAGAGATAGGTGCTCAATGGTGATAATGAAAG  50

seq1  ATGGTCATCATATGCAGATTGTTCCTAAAATATGAAAGAATAGAACATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCATCATATGCAGATTGTTCCTAAAATATGAAAGAATAGAACATGC  100

seq1  AAACCAAGAATAACTCTTGATCTGCATGTAGGATAAATAGTGCTGACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGAATAACTCTTGATCTGCATGTAGGATAAATAGTGCTGACAAT  150

seq1  CCTATGTTGTTCCTTGAGTTCCATTTCATCATGAAGCTATAGTAGAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTTGTTCCTTGAGTTCCATTTCATCATGAAGCTATAGTAGAATCC  200

seq1  CATTATTGGAAGGAGGTCAGGTGATGTCAATTGCATCTTTTATGTGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGGAAGGAGGTCAGGTGATGTCAATTGCATCTTTTATGTGAAAA  250

seq1  ACAATGGAGCTACTAAAATCTTACAGAACAGAATGGGGTGAATAGCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAGCTACTAAAATCTTACAGAACAGAATGGGGTGAATAGCCTGT  300

seq1  ACTTGCTTATAAACATAGTATTTTATTTGCTTTTTAAATACACTTCAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTATAAACATAGTATTTTATTTGCTTTTTAAATACACTTCAGTA  350

seq1  ATACAAAAATTGACAAAGTCTGGATCTCAATGCAATTTTGATTATAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAATTGACAAAGTCTGGATCTCAATGCAATTTTGATTATAATAT  400

seq1  AGAGGAGGCAGATACATGAATTCATACAGATATTAGTGGCTCCTACATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGCAGATACATGAATTCATACAGATATTAGTGGCTCCTACATTC  450

seq1  TCCAAGAATTCATGAATTAGAAACACGTTGGGTGAAATCAGTTTCCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAATTCATGAATTAGAAACACGTTGGGTGAAATCAGTTTCCAATG  500

seq1  CTTAGGAAAGATCTCTTTCAGTGGATATTTCATCAATTGCTCTGTCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAAAGATCTCTTTCAGTGGATATTTCATCAATTGCTCTGTCCATC  550

seq1  TGGAACAGGATTCTGAGGAAGAGACTGGATCTCCCTGCTACTTAATTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAGGATTCTGAGGAAGAGACTGGATCTCCCTGCTACTTAATTTAG  600

seq1  TGAATCAGGCAGTCTTCTTAGACACAGAACTCCATTATGGATGAAGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAGGCAGTCTTCTTAGACACAGAACTCCATTATGGATGAAGAGTG  650

seq1  CACACTAAAAAATTTATCATCCTTTAACAAATGCATAAGATTGGAAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAAAAAATTTATCATCCTTTAACAAATGCATAAGATTGGAAAGGG  700

seq1  AAAATCTAAGGGAAGTGACTAAGAAAAAAAAGGCGTTACAAGTGCAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTAAGGGAAGTGACTAAGAAAAAAAAGGCGTTACAAGTGCAAATG  750

seq1  TGGATAATAGATGCAAAAAAGCATTTTAAAGCACTTTGAGCTCCTTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAATAGATGCAAAAAAGCATTTTAAAGCACTTTGAGCTCCTTTTTG  800

seq1  GAGAAGGAATAGTGACACCTGGGAAAGTGGTGTTAAATAAATAACACCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAATAGTGACACCTGGGAAAGTGGTGTTAAATAAATAACACCAT  850

seq1  AAAAACCCAACAGGAGCCCAGATGCACTGAGCACAGATCCACAGAGTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCAACAGGAGCCCAGATGCACTGAGCACAGATCCACAGAGTTGA  900

seq1  ATTAATGAGGACATATTGCTTTAAATCATTTGACAATCTGAATGTTATTT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTAATGAGGACATATTGCTTTAAATCATTTGACATTCTGAATGTTATTT  950

seq1  GTCACTGAAGTGCACCCCAATGTTGTGTGTGTGTGTGTATATATGTATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCACTGAAGTGCACCCCAATGTTGTGTGTGTGTGTGTATATATGGATAT  1000

seq1  ATGCATATATATATATACATAC  1022
      |||||||||||| |||||||||
seq2  ATGCATATATATTTATACATAC  1022

seq1: chr18_31255962_31257153
seq2: B6Ng01-018C18.g_65_1246 (reverse)

seq1  TGCAGGAAACAGAAACAGTCTGCTGGTGACACTGATCGGCAGAGTCAATA  50
      |||||||||||||||| || || | |||||  ||||| || |||||||||
seq2  TGCAGGAAACAGAAACCGTTTGGT-GTGACCATGATC-GCGGAGTCAATA  48

seq1  AGCCCTTCAATAACTTCATGA-CCAAGTGCACTAACTAAGAGTTTCCTAC  99
        |||| ||| ||| |||||| ||||||||||||||||||||||||||| 
seq2  GCCCCTACAA-AAC-TCATGACCCAAGTGCACTAACTAAGAGTTTCCTA-  95

seq1  CAGTCACTCTGCCTGCCTGCTGACTGCTCTGCTTGTCTTCTTTCTATTTG  149
      ||||||||| | ||| |||| |||||| |||| ||||||| |||   |||
seq2  CAGTCACTC-GGCTG-CTGCAGACTGC-CTGCCTGTCTTCCTTCCTATTG  142

seq1  AAAAGACTTAAAAAAT-AATCATTGAAGCTGTGTAGCCTGGTATCAACAA  198
      |||||  ||||||||| |||||||||||||||||||||| ||||||||||
seq2  AAAAGGATTAAAAAATAAATCATTGAAGCTGTGTAGCCTTGTATCAACAA  192

seq1  TTGCAGTGTTCACGCCAATAATGAGGTTTTCAAATCAAGTCTCAATTTCA  248
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  TTGCAGT-TTCACGCCAATAATGAGG-TTTCAAATCAAGTCTCAATTTCA  240

seq1  TCATTTTTCTACATTATGTTCTGGAATAATTGGAAAATAAAGTTTTATAA  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-TTTTCTACATTATGTTCTGGAATAATTGGAAAATAAAGTTTTATAA  289

seq1  ATTACAAATCCACATGATACCTTGTGCAAAGTTATCATTTAATTACTCAA  348
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TACAAATCCACATGATACCTTGTGCAAAGTTATCATTTAATTACTCAA  338

seq1  CTCTTTTCTATTTTTTTTTAAATCAAGAATACCGTGATTAGTATTGGAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTATTTTTTTTTAAATCAAGAATACCGTGATTAGTATTGGAAT  388

seq1  ACATACTCCACACTCTGGAATCATCTAAATAAAGCTGGAGCTTATCACAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTCCACACTCTGGAATCATCTAAATAAAGCTGGAGCTTATCACAG  438

seq1  GCAGAAGGGAGAGGTATGCACTGGGGATCTTAATGAGTTAAGCACAGGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGGAGAGGTATGCACTGGGGATCTTAATGAGTTAAGCACAGGGA  488

seq1  AATAATGAACACGCTTTGTTAGTTCAGTTAGAGTCTCTTCAAATGGATGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGAACACGCTTTGTTAGTTCAGTTAGAGTCTCTTCAAATGGATGC  538

seq1  ATATGCAATTTTAGCTTTTTTACATGTCCCCACATCGTGTGTAAGTCTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAATTTTAGCTTTTTTACATGTCCCCACATCGTGTGTAAGTCTCC  588

seq1  TGCCTGAACCATGGACTTCTTACCCTGCTTTCCCTGTTGAGAATTACATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAACCATGGACTTCTTACCCTGCTTTCCCTGTTGAGAATTACATA  638

seq1  ATTCTTCTTGGTTTTTGTAGAATGTAACATGGAATTGGTAATAATTTCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTTGGTTTTTGTAGAATGTAACATGGAATTGGTAATAATTTCAG  688

seq1  GATTCATTGTTTTGTCAACAACAGCACAGAAATGATACCCTTTACTCCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTGTTTTGTCAACAACAGCACAGAAATGATACCCTTTACTCCTG  738

seq1  GAGTCCCTGAATTTTTATTTTGCATACTTGTTCATAATAGTATTTAGCGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCTGAATTTTTATTTTGCATACTTGTTCATAATAGTATTTAGCGT  788

seq1  AGTTTAATGATAAATTGATCTATAAGTTTAAGGTGTTTTTTTCATTTGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATGATAAATTGATCTATAAGTTTAAGGTGTTTTTTTCATTTGGA  838

seq1  CTTAAACAACTTCAGACAACTCTAAATATCTTTCTATACTCATGATTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACAACTTCAGACAACTCTAAATATCTTTCTATACTCATGATTCTG  888

seq1  ATATTTCTTTCTGTCAGATTTGTTTTACCTATGTATCTTGATTATAACTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTTTCTGTCAGATTTGTTTTACCTATGTATCTTGATTATAACTA  938

seq1  GTTATATACCTATGAGCCTGTTCATGCTTTAGGTCTTAGTTCCAGCTAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATACCTATGAGCCTGTTCATGCTTTAGGTCTTAGTTCCAGCTAAC  988

seq1  CATTTTCTTGCAGGATGACTTTTCTCTAATGGTTGGATTTATGTGAGCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTGCAGGATGACTTTTCTCTAATGGTTGGATTTATGTGAGCCT  1038

seq1  CAGATACCCTTGGATGTTCAAGCAGCTTCTTAGGTGCAGTGAGAAGCAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACCCTTGGATGTTCAAGCAGCTTCTTAGGTGCAGTGAGAAGCAGG  1088

seq1  TTCTATACAAGTTGGAGTCATAAAACAACTGCATCCAAAGTACCTCTATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATACAAGTTGGAGTCATAAAACAACTGCATCCAAAGTACCTCTATT  1138

seq1  TAGAGACAGTTAGTGGATTCTTTGCATTTCATTCACTTGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACAGTTAGTGGATTCTTTGCATTTCATTCACTTGAATTC  1182