BAC Information

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BAC

Clone NameB6Ng01-018P09
Chromosome18 (Build37)12 (Build37)
Map Location 83,742,606 - 83,743,56477,754,154 - 77,754,833
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMbp, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik, LOC665284
Downstream geneTshz1, Zadh2, LOC669856, Zfp407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018P09.bB6Ng01-018P09.g
ACCDH852208DH852209
length957929
definitionDH852208|Mus musculus domesticus DNA, BAC clone: B6Ng01-018P09, 5' end.DH852209|Mus musculus domesticus DNA, BAC clone: B6Ng01-018P09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,742,606 - 83,743,564)(77,754,154 - 77,754,833)
sequence
gaattcttatgtggtgtacgcccctcctttgtccagagcatatgcagagg
tacaaagaaaacagctttagatacttctctcaaaggagggcagaagtacc
caagatagtccaggtaggaggaagagaagtgaggagaatatagatttgag
aagtgactttaggctccctgtgctgtgagcaggcctggccctttccctcc
tctctgtggaaaatggggcaggaggcagagcatttctccttcccatcagc
agcaactgaaggatccctgcacagaacagagcaggaaaatgagacccaga
gctggagatgtggaactgtgggttcggaacactcgctgacagctgctgtg
acatccctattgtctgaatcctttaaagccacacgggaaacttccagtga
gaactggaatgaaaaaaaaaatgccaccacaattaagtctcactagacac
ctagcgcctgggctctgggaaaaggaggccttccaccaggcgagtgaaag
acaagggggaacagcttgccagcccgccgccccccatggttaatgaaggc
tctgccaggaagtgtgctcagaggagccaggatcttccttcattcagaga
actgtgctttgggcgatgtcataagaagcagcttgagaatggtggatgga
aatattcctgagagtgatctgaactatacaccacatctcaaactccaaga
agagtatttgttccactcaaaaaaacacccaaggtatctcagcaattaat
tttcaaggataaagaccgagtatgaaaatttgactaaactttcgcctaac
ccctctgcctctccaagtttagcaaacagcaggacaacgataggctttta
ctttccactccctccatcatgaatcaagtcccttgtatgaaacaaatcgt
tacaacaacaggactgacagcctgacagcctggttggttttaatgggagt
ggacagc
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
atcaccgtcgttccccagctgatgagttctgaattcggcagttgaatcct
tctcaacagtctgtgttacgggaacctttataaacgtgatccgcagttct
ggttctgaaatgaagtatccctcctgcgccagtccggagttttttctcgt
cccggatttcggcaccaattgttattcgtcgcgttctcacgaccggccag
gaagaacacaacaaccagaatcttctacggcaaagctttattgcttacat
ctttttgggggccagagtgtaagaagcaagagagagaagcaagagagaga
gaaaaacgaaaccccttctattttaaagagaacaaccattgcctagggcg
catcactccctgattggctgcagcccatggccgagctgacgttcacggga
aaaacagagtacaagtagtcgtaaatacccttggctcatgcgcagatgat
ttgtttaccaacttagaacacaggatgtcagcgccatcttgtgacggcga
atgtgggggcggcttcccacaaaatgcatgctaatttttctgtcctatcc
cagacttcgaaaatctggctgtacagtatggaagagctggaaaaagcatt
agagtgtagagtttggtgttgtcatggtttcaggcatctattgcagtctt
ggaatttatcccctacaggaagaggggggataccctgtgcccaagagtga
aattattgagtcagatgatataactgtgttgtcctgcagagaggtagctg
tgctgcttgccaacgtagggacagcaatttccattcctgtgagcagcaca
caaaggtcttgatcatgccgcgtcctccccaaccagagtctgcattgcct
gttactgctgggtcctccggggtggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_83742606_83743564
seq2: B6Ng01-018P09.b_47_1003

seq1  GAATTCTTATGTGGTGTACGCCCCTCCTTTGTCCAGAGCATATGCAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGTGGTGTACGCCCCTCCTTTGTCCAGAGCATATGCAGAGG  50

seq1  TACAAAGAAAACAGCTTTAGATACTTCTCTCAAAGGAGGGCAGAAGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGAAAACAGCTTTAGATACTTCTCTCAAAGGAGGGCAGAAGTACC  100

seq1  CAAGATAGTCCAGGTAGGAGGAAGAGAAGTGAGGAGAATATAGATTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAGTCCAGGTAGGAGGAAGAGAAGTGAGGAGAATATAGATTTGAG  150

seq1  AAGTGACTTTAGGCTCCCTGTGCTGTGAGCAGGCCTGGCCCTTTCCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTTTAGGCTCCCTGTGCTGTGAGCAGGCCTGGCCCTTTCCCTCC  200

seq1  TCTCTGTGGAAAATGGGGCAGGAGGCAGAGCATTTCTCCTTCCCATCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGGAAAATGGGGCAGGAGGCAGAGCATTTCTCCTTCCCATCAGC  250

seq1  AGCAACTGAAGGATCCCTGCACAGAACAGAGCAGGAAAATGAGACCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGAAGGATCCCTGCACAGAACAGAGCAGGAAAATGAGACCCAGA  300

seq1  GCTGGAGATGTGGAACTGTGGGTTCGGAACACTCGCTGACAGCTGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGATGTGGAACTGTGGGTTCGGAACACTCGCTGACAGCTGCTGTG  350

seq1  ACATCCCTATTGTCTGAATCCTTTAAAGCCACACGGGAAACTTCCAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTATTGTCTGAATCCTTTAAAGCCACACGGGAAACTTCCAGTGA  400

seq1  GAACTGGAATGAAAAAAAAAATGCCACCACAATTAAGTCTCACTAGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGAATGAAAAAAAAAATGCCACCACAATTAAGTCTCACTAGACAC  450

seq1  CTAGCGCCTGGGCTCTGGGAAAAGGAGGCCTTCCACCAGGCGAGTGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGCCTGGGCTCTGGGAAAAGGAGGCCTTCCACCAGGCGAGTGAAAG  500

seq1  ACAAGGGGGAACAGCTTGCCAGCCCGCCGCCCCCCATGGTTAATGAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGGGAACAGCTTGCCAGCCCGCCGCCCCCCATGGTTAATGAAGGC  550

seq1  TCTGCCAGGAAGTGTGCTCAGAGGAGCCAGGATCTTCCTTCATTCAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGGAAGTGTGCTCAGAGGAGCCAGGATCTTCCTTCATTCAGAGA  600

seq1  ACTGTGCTTTGGGCGATGTCATAAGAAGCAGCTTGAGAATGGTGGATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTTTGGGCGATGTCATAAGAAGCAGCTTGAGAATGGTGGATGGA  650

seq1  AATATTCCTGAGAGTGATCTGAACTATACACCACATCTCAAACTCCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCTGAGAGTGATCTGAACTATACACCACATCTCAAACTCCAAGA  700

seq1  AGAGTATTTGTTCCACTCAAAAAAACACCCAAGGTATCTCAGCAATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATTTGTTCCACTCAAAAAAACACCCAAGGTATCTCAGCAATTAAT  750

seq1  TTTCAAGGATAAAGACCGAGTATGAAAATTTGACTAAACTTTCGCCTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGATAAAGACCGAGTATGAAAATTTGACTAAACTTTCGCCTAAC  800

seq1  CCCTCTGCCTCTCCAAGTTTAGCAAACAGCAGGACAACGATAGGCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCTCTGCCTCTCCAAGTTTAGCAAACAGCAGGACAACGATAGGC-TTTT  849

seq1  ACTTTCCACTCCCTCCATCATGAATCAAGTCCCTTGTATGAAACAAATCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCACTCCCTCCATCATGAATCAAGTCCCTTGTATGAAACAAATCG  899

seq1  TTACAACAACAGGGACTGACAGCCTGACAGCCTGGTTGGTTATTAATGGG  950
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  TTACAACAACA-GGACTGACAGCCTGACAGCCTGGTTGGTT-TTAATGGG  947

seq1  AGT-GACAGC  959
      ||| ||||||
seq2  AGTGGACAGC  957

seq1: chr12_77754154_77754833
seq2: B6Ng01-018P09.g_129_504 (reverse)

seq1  CTCGGCCGATGGGCTGCAGCCAATCAGGGAGTAATACGTCCTAGGCGGAG  50
      ||||||| |||||||||||||||||||||||| || || |||||||    
seq2  CTCGGCC-ATGGGCTGCAGCCAATCAGGGAGTGATGCGCCCTAGGC----  45

seq1  AATAATTCT--CCTTAAAAAGGGACGGGGTTTCGCCATTCTCCCTTTTTG  98
      |||  || |   ||| ||||  || |||||||||           |||| 
seq2  AATGGTTGTTCTCTTTAAAATAGAAGGGGTTTCG-----------TTTTT  84

seq1  CTCTCTTGCTCTTGCTCTCTTGCTCTCTTGCGCTCTGGCTCCTAAAAATG  148
      ||||||  ||||||||       |||||                      
seq2  CTCTCT--CTCTTGCT-------TCTCT----------------------  103

seq1  TAAGCAATAGAGCTCTTGCTCTCTTGCTCTCTGGCTCCTAAAGATGTAAG  198
                  |||||||| |||| | ||||||| || |||        
seq2  ------------CTCTTGCT-TCTTACACTCTGGCCCCCAAA--------  132

seq1  CAATAGAGCTCTTGCTCTCTTGCACTCTTGCTCCTGAAGATGTAAGCAAT  248
                                          ||||||||||||||
seq2  ------------------------------------AAGATGTAAGCAAT  146

seq1  AAAGTTTTGCCGCAGAAGATTCCGGTTTGTTGCGTTCTTCCTGGCCGGTC  298
      |||| ||||||| ||||||||| || |||||| |||||||||||||||||
seq2  AAAGCTTTGCCGTAGAAGATTCTGG-TTGTTGTGTTCTTCCTGGCCGGTC  195

seq1  GCGAGAACG---CGTGTAAGAGTTGGTGCCGAAACCCGGGACGAGAAAAC  345
      | |||||||   ||  ||| | |||||||||||| ||||||||||||   
seq2  GTGAGAACGCGACGAATAACAATTGGTGCCGAAATCCGGGACGAGAA---  242

seq1  CCGGGACGAGAAATCCTGGGACGAGAAAACCCGGGACGGTTACCATCACC  395
                               ||||| | ||            || 
seq2  -------------------------AAAACTCCGG------------ACT  255

seq1  GGCGCAAGGAAGATCCCTCATTCCGGAACAAGAACTGCGGGTCATGGTAA  445
      |||||| |   ||| | ||||| | |||| |||||||||| ||| | | |
seq2  GGCGCAGGAGGGATACTTCATTTCAGAACCAGAACTGCGGATCACGTTTA  305

seq1  TGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAAT  495
      | ||| |||||||||| |||||||||||||||||||||||||||  ||||
seq2  TAAAG-GTTCCCGTAACACAGACTGTTGAGAAGGATTCAACTGC-CGAAT  353

seq1  TCAGAACTCTTCAGCTGGGGAACGGTGGTAATGAAGTGTTCCCGTAAAAC  545
      ||||||||| |||||||||||||                           
seq2  TCAGAACTCATCAGCTGGGGAAC---------------------------  376

seq1  AGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGG  595
                                                        
seq2  --------------------------------------------------  376

seq1  GAATGGTGGTAATGAAGTGTTCCCGTAACACAGACTGTTGAGAAGGATTC  645
                                                        
seq2  --------------------------------------------------  376

seq1  AACTGCGTGAATTCAGAACTCTTCAGCTGGGGAAC  680
                                         
seq2  -----------------------------------  376