BAC Information

Click to search

BAC

Clone NameB6Ng01-019C03
Chromosome18 (Build37)
Map Location 42,773,366 - 42,935,604
singlet/doubletdoublet
Overlap geneLOC100042037, Ppp2r2b
Upstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151
Downstream geneLOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019C03.bB6Ng01-019C03.g
ACCDH852315DH852316
length472913
definitionDH852315|Mus musculus domesticus DNA, BAC clone: B6Ng01-019C03, 5' end.DH852316|Mus musculus domesticus DNA, BAC clone: B6Ng01-019C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,773,366 - 42,773,839)(42,934,695 - 42,935,604)
sequence
ttcttttacttgaattctgttgcttatagccatactccatcatagcaaga
actcctgcctttacctcacaaatgctggggcatttagatgtgcaccatta
tgtccaattgtgtttttcctctcaatgtctctctctctgtccctctccct
ctcgctccctttctttctttctttctttctttctttctttctttctttct
ttctttctttctttcttttctctctttctctttcccttccgttccctttc
ttttttccttccttccttccttcttccttccttcctccttccttccttcc
ttccttctttccttccttccttcctcccttcctccttctctctctctctt
tctttctctctttctttctttctttctttctttctttctttctttctttc
tatctttctatcttcctttctttctttctttctatctttctttctttcgt
tctgtgtttctttctttctttc
gaattctctgtttagctctgtcctcattttgttatcaggttatttggttc
tctgcagtctaacttcttgaatcctttgtatatattggatattagccctc
tatcagatgtgggattggtaaagatctttcccaatctgttggttgccgct
gtgataggttgacaatgaatacctgtcaatgttgccttcgaatacccatt
attttaattgaaaaaaatttaaagaattccaatatatgagtacagtattt
gcatcattatccaccccttgtgtcttgaaaatgaagtctttttcctgtat
gtgtctgtatttgttacttctctgctgctagataaattatcatgaccaga
agccactcaaggaacttaccaagaactagacttggtaatggggttggaac
agcagcatcagggtgggaggccagagcagtgactcaggagctcatgcctc
aaataaacatgtgaagcagaaagaaaaacaaagtggggcgaggctataaa
ctatcaaagcccacaccaagtggcacacttccttcaacaaggctccagat
cctaagaatgtcataacctccctagacagcaccaccagctgggggccaag
tgttcacacgcatgagccgatggggtaacacttcctatttaacccacagt
agtgtttttttttcgcttgtgtttttggatgtgaaatctccccctaaagg
ctcattcacctgaagtatttggtccccggttgctgatattatttaggaca
ttgtggagccgttggcagtgggatcttgctgagggtagcaagttttagga
gagaaggagtgcagttcatatcttatccttgctcataaactgcctctgct
tctgactaccgacgcatataaatcgtggccacactctttctccacataga
gccagcagccgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42773366_42773839
seq2: B6Ng01-019C03.b_43_520

seq1  GAATTCTTCTTTTACTTGAATTCTGTTGCTTATAGCCATACTCCATCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTTACTTGAATTCTGTTGCTTATAGCCATACTCCATCATA  50

seq1  GCAAGAACTCCTGCCTTTACCTCACAAATGCTGGGGCATTTAGATGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAACTCCTGCCTTTACCTCACAAATGCTGGGGCATTTAGATGTGCA  100

seq1  CCATTATGTCCAATTGTGTTTTTCCTCTCAATGTCTCTCTCTCTGTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATGTCCAATTGTGTTTTTCCTCTCAATGTCTCTCTCTCTGTCCCT  150

seq1  CTCCCTCTCGCTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTCGCTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  200

seq1  CTTTCTTTCTTTCTTTCTTTCTTTTCTCTCTTTCTCTTTCCCTTCCGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTTCTCTCTTTCTCTTTCCCTTCCGTTC  250

seq1  CCTTTCTTTTTTCCTTCCTTCCTTCCTTCTTCCTTCCTTCCTCCTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTTTTCCTTCCTTCCTTCCTTCTTCCTTCCTTCCTCCTTCCTT  300

seq1  CCTTCCTTCCTTCTTTCCTTCCTTCCTTCCTCCCTTCCTCCTTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCTTTCCTTCCTTCCTTCCTCCCTTCCTCCTTCTCTCTC  350

seq1  TCTCTTTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  400

seq1  TCTTTCTTTCTTTCTATCTTCCTTTCTTTCTTTCTTTCTATCTTTCTTTC  450
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTATCTTTCTATCTTCCTTTCTTTCTTTCTTTCTATCTTTCTTTC  450

seq1  TTTCTTTC----TTTCTTTCTTTCTTTC  474
      |||| |||    ||||||||||||||||
seq2  TTTCGTTCTGTGTTTCTTTCTTTCTTTC  478

seq1: chr18_42934695_42935604
seq2: B6Ng01-019C03.g_70_982 (reverse)

seq1  GGCGGCTGCTGGCTCTATGTGGAGAAAGAGTGTGGCAACGATTATGCTGC  50
      |||||||||||||||||||||||||||||||||||| ||||||    |||
seq2  GGCGGCTGCTGGCTCTATGTGGAGAAAGAGTGTGGCCACGATTTATATGC  50

seq1  GTCGGTAGTCAGAAGCAGAGGCAGTCTCTGAGC-AGGATAAGCTATGAAC  99
      ||||||||||||||||||||||||| | ||||| |||||||| |||||||
seq2  GTCGGTAGTCAGAAGCAGAGGCAGTTTATGAGCAAGGATAAGATATGAAC  100

seq1  TGCACTCCTTCTCTCCTACAACTTGCTACCCTCAGCAAGATCCCACTGCC  149
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCACTCCTTCTCTCCTAAAACTTGCTACCCTCAGCAAGATCCCACTGCC  150

seq1  AACGGCTCCACAATGTCCTAAATAATATCAGCAACCGGGGACCAAATACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCTCCACAATGTCCTAAATAATATCAGCAACCGGGGACCAAATACT  200

seq1  TCAGGTGAATGAGCC-TTAGGGGGAGATTTCACATCC-AAAACACAAGCG  247
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  TCAGGTGAATGAGCCTTTAGGGGGAGATTTCACATCCAAAAACACAAGCG  250

seq1  AAAAAAAAACACTACTGTGGGTTAAATAGGAAGTGTTACCCCATCGGCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACACTACTGTGGGTTAAATAGGAAGTGTTACCCCATCGGCTC  300

seq1  ATGCGTGTGAACACTTGGCCCCCAGCTGGTGGTGCTGTCTAGGGAGGTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTGTGAACACTTGGCCCCCAGCTGGTGGTGCTGTCTAGGGAGGTTA  350

seq1  TGACATTCTTAGGATCTGGAGCCTTGTTGAAGGAAGTGTGCCACTTGGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTCTTAGGATCTGGAGCCTTGTTGAAGGAAGTGTGCCACTTGGTG  400

seq1  TGGGCTTTGATAGTTTATAGCCTCGCCCCACTTTGTTTTTCTTTCTGCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTGATAGTTTATAGCCTCGCCCCACTTTGTTTTTCTTTCTGCTT  450

seq1  CACATGTTTATTTGAGGCATGAGCTCCTGAGTCACTGCTCTGGCCTCCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTTATTTGAGGCATGAGCTCCTGAGTCACTGCTCTGGCCTCCCA  500

seq1  CCCTGATGCTGCTGTTCCAACCCCATTACCAAGTCTAGTTCTTGGTAAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATGCTGCTGTTCCAACCCCATTACCAAGTCTAGTTCTTGGTAAGT  550

seq1  TCCTTGAGTGGCTTCTGGTCATGATAATTTATCTAGCAGCAGAGAAGTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGTGGCTTCTGGTCATGATAATTTATCTAGCAGCAGAGAAGTAA  600

seq1  CAAATACAGACACATACAGGAAAAAGACTTCATTTTCAAGACACAAGGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACAGACACATACAGGAAAAAGACTTCATTTTCAAGACACAAGGGG  650

seq1  TGGATAATGATGCAAATACTGTACTCATATATTGGAATTCTTTAAATTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAATGATGCAAATACTGTACTCATATATTGGAATTCTTTAAATTTT  700

seq1  TTTCAATTAAAATAATGGGTATTCGAAGGCAACATTGACAGGTATTCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTAAAATAATGGGTATTCGAAGGCAACATTGACAGGTATTCATT  750

seq1  GTCAACCTATCACAGCGGCAACCAACAGATTGGGAAAGATCTTTACCAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACCTATCACAGCGGCAACCAACAGATTGGGAAAGATCTTTACCAAT  800

seq1  CCCACATCTGATAGAGGGCTAATATCCAATATATACAAAGGATTCAAGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATCTGATAGAGGGCTAATATCCAATATATACAAAGGATTCAAGAA  850

seq1  GTTAGACTGCAGAGAACCAAATAACCTGATAACAAAATGAGGACAGAGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACTGCAGAGAACCAAATAACCTGATAACAAAATGAGGACAGAGCT  900

seq1  AAACAGAGAATTC  910
      |||||||||||||
seq2  AAACAGAGAATTC  913