BAC Information

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BAC

Clone NameB6Ng01-019G21
Chromosome11 (Build37)18 (Build37)
Map Location 106,100,318 - 106,101,35470,710,938 - 70,711,285
singlet/doubletsingletsinglet
Overlap geneDdx42
Upstream geneTlk2, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik
Downstream geneFtsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019G21.bB6Ng01-019G21.g
ACCDH852516DH852517
length1,015462
definitionDH852516|Mus musculus domesticus DNA, BAC clone: B6Ng01-019G21, 5' end.DH852517|Mus musculus domesticus DNA, BAC clone: B6Ng01-019G21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,100,318 - 106,101,354)(70,710,938 - 70,711,285)
sequence
gaattctatctaggagtttcaaagctttttttaatccgtgagagttctcg
ggtagattttactgaagtaacttttcacacctgtcttaactacattacat
tagtgtgttgattactcttctgtttttttcagagtatcaggttcggtcca
tagcaagtcatgttcgtcctgacagacaaagtatgtatgaagcagcttta
tactaaaactatattcaaaatgaaccgggatttttataagtactcacagt
tatgtaagcaaaaattgctttgtatgtcctgatgagtactgcaaagagga
gagttaatgacatttatttgagctaaaaaagaccttagacgacatcagat
gtgaggtgtgttttgttgttgtctgttgtatcgaacctatggtgtcatgg
atgttagacaaacactctacctctcttagctgcatatgaatttccagtcc
tctttttcactttgttttttaggtagagtcttgctgagctgactaggctg
tccttgaactcactatagcctaggcagccataaacttgaagtactccttc
atgcttcctcctccaaatagctgggattatgggttcatgccaccaggccc
agcacactgctcactttttattggtgctaaaattgaatttaaataatttc
ctgcagtgtaaatctgctgattcaaaattaaagtcttttcctgaaccatt
atggcaactcatttcttgattgaaaatgaagtttaaaaaaaaaatcacgg
ccaggcatggtggcgcacgcctttaatcccagcactcacgagcagaggca
ggcggatttctgagttcgaggccagcctggtctacaaagtgagttccagg
acagccagtgctacacagagaaaccctgtctcaaaaaaaacaaaataata
tcacttttattagtgaatcgttactttccaagcttaagagtgattcatag
aaggatttttacagagttgctttatcttttactctctattcatgcacttt
cgaagaagattgaaa
catcataattgttttcttacctctgtgtctggtggaacgaatgtctatcc
aaagagacactgggtttttgtttgtttgtttgtttgtttgtttgtttggt
tggttggttggcttgggcactgcctttagaaggtttgctgagctgcctgt
ggggttagcgtgggcaactgtgcttccaggttctaatccgtgaacccagg
caggagcactctgtctcccacagaccccaacaggcctgtgttctctcaga
atcggcttctttcttgctcctgggtgcaattgtccggtctattgatcctc
ggttcacagagggtagggcatgtgaggggcgtagggaaggagtccttagg
agacagattcctctctcctccatgatgactctggttgcttgtaaagttgt
taatacaaccctcttctaattctttggatatatttccaaattagaaggat
gggggagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106100318_106101354
seq2: B6Ng01-019G21.b_43_1057

seq1  GAATTCTATCTAGGAGTTTCAAAGCTTTTTTTAATCCGTGAGAGTTCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTAGGAGTTTCAAAGCTTTTTTTAATCCGTGAGAGTTCTCG  50

seq1  GGTAGATTTTACTGAAGTAACTTTTCACACCTGTCTTAACTACATTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATTTTACTGAAGTAACTTTTCACACCTGTCTTAACTACATTACAT  100

seq1  TAGTGTGTTGATTACTCTTCTGTTTTTTTCAGAGTATCAGGTTCGGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTTGATTACTCTTCTGTTTTTTTCAGAGTATCAGGTTCGGTCCA  150

seq1  TAGCAAGTCATGTTCGTCCTGACAGACAAAGTATGTATGAAGCAGCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGTCATGTTCGTCCTGACAGACAAAGTATGTATGAAGCAGCTTTA  200

seq1  TACTAAAACTATATTCAAAATGAACCGGGATTTTTATAAGTACTCACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAACTATATTCAAAATGAACCGGGATTTTTATAAGTACTCACAGT  250

seq1  TATGTAAGCAAAAATTGCTTTGTATGTCCTGATGAGTACTGCAAAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGCAAAAATTGCTTTGTATGTCCTGATGAGTACTGCAAAGAGGA  300

seq1  GAGTTAATGACATTTATTTGAGCTAAAAAAGACCTTAGACGACATCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATGACATTTATTTGAGCTAAAAAAGACCTTAGACGACATCAGAT  350

seq1  GTGAGGTGTGTTTTGTTGTTGTCTGTTGTATCGAACCTATGGTGTCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGTGTTTTGTTGTTGTCTGTTGTATCGAACCTATGGTGTCATGG  400

seq1  ATGTTAGACAAACACTCTACCTCTCTTAGCTGCATATGAATTTCCAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGACAAACACTCTACCTCTCTTAGCTGCATATGAATTTCCAGTCC  450

seq1  TCTTTTTCACTTTGTTTTTTAGGTAGAGTCTTGCTGAGCTGACTAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCACTTTGTTTTTTAGGTAGAGTCTTGCTGAGCTGACTAGGCTG  500

seq1  TCCTTGAACTCACTATAGCCTAGGCAGCCATAAACTTGAAGTACTCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAACTCACTATAGCCTAGGCAGCCATAAACTTGAAGTACTCCTTC  550

seq1  ATGCTTCCTCCTCCAAATAGCTGGGATTATGGGTTCATGCCACCAGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCTCCTCCAAATAGCTGGGATTATGGGTTCATGCCACCAGGCCC  600

seq1  AGCACACTGCTCACTTTTTATTGGTGCTAAAATTGAATTTAAATAATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTGCTCACTTTTTATTGGTGCTAAAATTGAATTTAAATAATTTC  650

seq1  CTGCAGTGTAAATCTGCTGATTCAAAATTAAAGTCTTTTCCTGAACCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGTAAATCTGCTGATTCAAAATTAAAGTCTTTTCCTGAACCATT  700

seq1  ATGGCAACTCATTTCTTGATTGAAAATGAAGTTTAAAAAAAAAATCACGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAACTCATTTCTTGATTGAAAATGAAGTTTAAAAAAAAAATCACGG  750

seq1  CCAGGCATGGTGGCGCACGCCTTTAATCCCAGCACTCAGGAGCAGAGGCA  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCAGGCATGGTGGCGCACGCCTTTAATCCCAGCACTCACGAGCAGAGGCA  800

seq1  GGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  850

seq1  ACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAA  900
      |||||||| |||||||||||||||||||||||     |||||||| ||||
seq2  ACAGCCAGTGCTACACAGAGAAACCCTGTCTC-----AAAAAAAACAAAA  895

seq1  AAAAATCACTTTTATTTAGTGAATCAGTTACATTACAGAAGCTTAAAGAG  950
       || |||||||||| |||||||||| ||||| || |  |||||| |||||
seq2  TAATATCACTTTTA-TTAGTGAATC-GTTACTTTCC--AAGCTT-AAGAG  940

seq1  TGAATTCAGTAAGAAGTGATTTTTAACAGAATTTGCTTTATCTTTTAGCT  1000
      || |||||   ||||| ||||||| |||| | ||||||||||||||| ||
seq2  TG-ATTCA--TAGAAG-GATTTTT-ACAG-AGTTGCTTTATCTTTTA-CT  983

seq1  CTCTTATTCAGTGCAACTTTTCGAAAGAAGATTGAAA  1037
      ||| |||||| ||||   ||||| |||||||||||||
seq2  CTC-TATTCA-TGCA--CTTTCG-AAGAAGATTGAAA  1015

seq1: chr18_70710938_70711285
seq2: B6Ng01-019G21.g_189_536 (reverse)

seq1  CCCCCCTCCCCCATCCTTCTAATTTGGAAATATATCCAAAGAATTAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTCCCCCATCCTTCTAATTTGGAAATATATCCAAAGAATTAGAAG  50

seq1  AGGGTTGTATTAACAACTTTACAAGCAACCAGAGTCATCATGGAGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGTATTAACAACTTTACAAGCAACCAGAGTCATCATGGAGGAGAG  100

seq1  AGGAATCTGTCTCCTAAGGACTCCTTCCCTACGCCCCTCACATGCCCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTGTCTCCTAAGGACTCCTTCCCTACGCCCCTCACATGCCCTAC  150

seq1  CCTCTGTGAACCGAGGATCAATAGACCGGACAATTGCACCCAGGAGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGAACCGAGGATCAATAGACCGGACAATTGCACCCAGGAGCAAG  200

seq1  AAAGAAGCCGATTCTGAGAGAACACAGGCCTGTTGGGGTCTGTGGGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCCGATTCTGAGAGAACACAGGCCTGTTGGGGTCTGTGGGAGAC  250

seq1  AGAGTGCTCCTGCCTGGGTTCACGGATTAGAACCTGGAAGCACAGTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCTCCTGCCTGGGTTCACGGATTAGAACCTGGAAGCACAGTTGCC  300

seq1  CACGCTAACCCCACAGGCAGCTCAGCAAACCTTCTAAAGGCAGTGCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTAACCCCACAGGCAGCTCAGCAAACCTTCTAAAGGCAGTGCCC  348