BAC Information

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BAC

Clone NameB6Ng01-020B21
Chromosome18 (Build37)
Map Location 65,889,521 - 66,014,653
singlet/doubletdoublet
Overlap gene5330437I02Rik, Sec11c
Upstream geneNedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532
Downstream geneGrp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020B21.bB6Ng01-020B21.g
ACCDH853007DH853008
length1,081943
definitionDH853007|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B21, 5' end.DH853008|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,889,521 - 65,890,611)(66,013,713 - 66,014,653)
sequence
gaattctgtgtctccctgcccccctcctcgaccccttgcaagacagggtc
tgtttgtatggccttggctgtcctagaaagctctctggagaccagtaggc
ctctcaactcacagagatccacctgcctctgcctcccaagtgctgggaag
atgtgcgtgttcccccaccacctactttggaattctgtgctcttggtcag
cccggttagtaatctgagtctcactatctgtttggagaaacaggaatatt
aatgtgtcctttttcttctggtagggttcaaacatccatctgtttggtca
tttcctcaataaacgtttattgagaagtagttggggatggttggagaact
gggagcaatctcattagggaaagcattgtgaaaatagtgtggcactaata
gccatggaagtctttcacaatattgcttcactacaccaaaagggcatggc
tctgtgtggaaaagtgtttggtgtgcaagcatggggagttgagtttaaat
ccctagcatgcatgatccatccaggcacgactgcgtgtgcctataactcc
agctttgtggggcagagaagggagctcacgagtcagccagtctacccaaa
tagcgagcttctagtttagtgagggactcttctcaaggcaataaggaggg
tagtgacagaggaagacactggggcccttctcctcacttctccatgagtg
gcaatgggcagatgtgcttgcatactaacatgcatgaaccatataaccag
agagagagagacagagacagagagataccccatacacacacgcacacaga
agaagagagagcacacagaagagagagcacaataactatgggtattgtta
gtcaaataatcttgattctccatcctccaagtcagtggctctcaacttcc
gcaatgctgtggtcctttatacacacagttcctcatggtgtggtgacttc
atactgtgatttttctatggtatgaccatacgtaatttctgatatgccac
cactgtgaagggttctttccacccctctagatgggccgaaccacagttga
agaaagctacttggggtgctgggtcttctgt
gaattccattgcatttctgactaaggtagtgattctgaacctgtgggtgt
gaccctttggggtttaacgaccctttagcaggggtcacatgtcagataca
tgtcagttatcctgtgtatcagatagcctgcaagtcagatatcctgcatg
tcagatatttacatgatgattcataacaacagcaaaattacagttatgaa
gtagcaacgaaataattttatgattgagtgttgccaccacacgaggaatt
aactgtattaaaagggtcacagcattcgggggattgagaaccactggact
aagcgacaagatataaaacacactctctcctttatcacggccttgaatgt
gggtgttccaatgcagccctgacaaccatcttgtgccatcagaaaacaga
aactggaactatgcagagtttttgggtctgcgggcatgggagagcattgc
tggttgctgtcccactctgtcctctgggaacatctgataaataaactccc
atgtatttaagctgctgtttaaaaggtctttgttgcagctaaataaatcc
ctagattatgcagggaggttctgaaaatgaaggctagagcagatggaaaa
caaatatcctccttctttgactcgggcgacgttgtctacaaatagaatcc
accacttctcaaatctcttcagatctcggagattttccttatgccgcatg
ctgttccccaaggaatacagttggtaacgccattgactgtgggatcttgg
acaacatctcaacctctctgcatcgcatcgctgtttcttcccgtggaagg
gatgggtgacaataatcgctgcaaagagctaaaagggatttaaaaaagca
aaatgaagtttttcctttaccagtgtgtgtggaaactcagtaactgacgt
cgatggtaaaggaggaggaggaggggcatcggtgtaggaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65889521_65890611
seq2: B6Ng01-020B21.b_40_1120

seq1  GAATTCTGTGTCTCCCTGCCCCCCTCCTCGACCCCTTGCAAGACAGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTCTCCCTGCCCCCCTCCTCGACCCCTTGCAAGACAGGGTC  50

seq1  TGTTTGTATGGCCTTGGCTGTCCTAGAAAGCTCTCTGGAGACCAGTAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTATGGCCTTGGCTGTCCTAGAAAGCTCTCTGGAGACCAGTAGGC  100

seq1  CTCTCAACTCACAGAGATCCACCTGCCTCTGCCTCCCAAGTGCTGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAACTCACAGAGATCCACCTGCCTCTGCCTCCCAAGTGCTGGGAAG  150

seq1  ATGTGCGTGTTCCCCCACCACCTACTTTGGAATTCTGTGCTCTTGGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCGTGTTCCCCCACCACCTACTTTGGAATTCTGTGCTCTTGGTCAG  200

seq1  CCCGGTTAGTAATCTGAGTCTCACTATCTGTTTGGAGAAACAGGAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTTAGTAATCTGAGTCTCACTATCTGTTTGGAGAAACAGGAATATT  250

seq1  AATGTGTCCTTTTTCTTCTGGTAGGGTTCAAACATCCATCTGTTTGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTCCTTTTTCTTCTGGTAGGGTTCAAACATCCATCTGTTTGGTCA  300

seq1  TTTCCTCAATAAACGTTTATTGAGAAGTAGTTGGGGATGGTTGGAGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAATAAACGTTTATTGAGAAGTAGTTGGGGATGGTTGGAGAACT  350

seq1  GGGAGCAATCTCATTAGGGAAAGCATTGTGAAAATAGTGTGGCACTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAATCTCATTAGGGAAAGCATTGTGAAAATAGTGTGGCACTAATA  400

seq1  GCCATGGAAGTCTTTCACAATATTGCTTCACTACACCAAAAGGGCATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGAAGTCTTTCACAATATTGCTTCACTACACCAAAAGGGCATGGC  450

seq1  TCTGTGTGGAAAAGTGTTTGGTGTGCAAGCATGGGGAGTTGAGTTTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGGAAAAGTGTTTGGTGTGCAAGCATGGGGAGTTGAGTTTAAAT  500

seq1  CCCTAGCATGCATGATCCATCCAGGCACGACTGCGTGTGCCTATAACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCATGCATGATCCATCCAGGCACGACTGCGTGTGCCTATAACTCC  550

seq1  AGCTTTGTGGGGCAGAGAAGGGAGCTCACGAGTCAGCCAGTCTACCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTGGGGCAGAGAAGGGAGCTCACGAGTCAGCCAGTCTACCCAAA  600

seq1  TAGCGAGCTTCTAGTTTAGTGAGGGACTCTTCTCAAGGCAATAAGGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGAGCTTCTAGTTTAGTGAGGGACTCTTCTCAAGGCAATAAGGAGGG  650

seq1  TAGTGACAGAGGAAGACACTGGGGCCCTTCTCCTCACTTCTCCATGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACAGAGGAAGACACTGGGGCCCTTCTCCTCACTTCTCCATGAGTG  700

seq1  GCAATGGGCAGATGTGCTTGCATACTAACATGCATGAACCATATAACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGGCAGATGTGCTTGCATACTAACATGCATGAACCATATAACCAG  750

seq1  AGAGAGAGAGACAGAGACAGAGAGATACCCCATACACACACGCACACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGACAGAGACAGAGAGATACCCCATACACACACGCACACAGA  800

seq1  AGAAGAGAGAGCACACAGAAGAGAGAGCACAATAACTATTGGTATTGTTA  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAAGAGAGAGCACACAGAAGAGAGAGCACAATAACTATGGGTATTGTTA  850

seq1  GTCAAATAATCCTGATTCTCCATCCTCCAAGTCAGTGGCTCTCAACTTCC  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATAATCTTGATTCTCCATCCTCCAAGTCAGTGGCTCTCAACTTCC  900

seq1  GCAATGCTGTGGTCCTTTAATACACACAGTTCCTCATGGTGTGGTTGACT  950
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  GCAATGCTGTGGTCCTTT-ATACACACAGTTCCTCATGGTGTGG-TGACT  948

seq1  TCATAACTGTGATTTTTCTATGGTTATGAACCATAACGTAAATATCTGAT  1000
      |||| |||||||||||||||||| |||| ||||| |||| ||| ||||||
seq2  TCAT-ACTGTGATTTTTCTATGG-TATG-ACCAT-ACGT-AATTTCTGAT  993

seq1  ATGCAACCACTGTGAAAGGGTCATTCCACCCTCCTAGATGGGCCGAGAGC  1050
      |||| ||||||||||| || || ||||||||  |||||||||||  || |
seq2  ATGCCACCACTGTGAAGGGTTCTTTCCACCCCTCTAGATGGGCC--GAAC  1041

seq1  CACAGGTTGAGAACAGCTACTTTGGGTGCTTGGTCTTCTGT  1091
      |||| |||||  | |||||||| ||||||| ||||||||||
seq2  CACA-GTTGAAGAAAGCTACTTGGGGTGCTGGGTCTTCTGT  1081

seq1: chr18_66013713_66014653
seq2: B6Ng01-020B21.g_64_1005 (reverse)

seq1  TCCTCCT-CCCCG-TGCCCCTCCTCCTCCTCCTTTACCATCGACGTCAGT  48
      ||||||| | ||| ||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTACACCGATGCCCCTCCTCCTCCTCCTTTACCATCGACGTCAGT  50

seq1  TACTGAGTTTCCACACACACTGGTAAAGGAAAAACTTCATTTTGCTTTTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGTTTCCACACACACTGGTAAAGGAAAAACTTCATTTTGCTTTTT  100

seq1  TAAAATCCCTTTTAGCTCTTTGCAGCGATTATTGTCACCCATCCCTTCCA  148
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAATCCCTTTTAGCTCTTTGCAGCGATTATTGTCACCCATCCCTTCCA  149

seq1  CGGGAAGAAACAGCGATGCGATGCAGAGAGGTTGAGATGTTGTCCAAGAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGAAACAGCGATGCGATGCAGAGAGGTTGAGATGTTGTCCAAGAT  199

seq1  CCCACAGTCAATGGCGTTACCAACTGTATTCCTTGGGGAACAGCATGCGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTCAATGGCGTTACCAACTGTATTCCTTGGGGAACAGCATGCGG  249

seq1  CATAAGGAAAATCTCCGAGATCTGAAGAGATTTGAGAAGTGGTGGATTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGAAAATCTCCGAGATCTGAAGAGATTTGAGAAGTGGTGGATTCT  299

seq1  ATTTGTAGACAACGTCGCCCGAGTCAAAGAAGGAGGATATTTGTTTTCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAGACAACGTCGCCCGAGTCAAAGAAGGAGGATATTTGTTTTCCA  349

seq1  TCTGCTCTAGCCTTCATTTTCAGAACCTCCCTGCATAATCTAGGGATTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTAGCCTTCATTTTCAGAACCTCCCTGCATAATCTAGGGATTTA  399

seq1  TTTAGCTGCAACAAAGACCTTTTAAACAGCAGCTTAAATACATGGGAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGCAACAAAGACCTTTTAAACAGCAGCTTAAATACATGGGAGTT  449

seq1  TATTTATCAGATGTTCCCAGAGGACAGAGTGGGACAGCAACCAGCAATGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCAGATGTTCCCAGAGGACAGAGTGGGACAGCAACCAGCAATGC  499

seq1  TCTCCCATGCCCGCAGACCCAAAAACTCTGCATAGTTCCAGTTTCTGTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATGCCCGCAGACCCAAAAACTCTGCATAGTTCCAGTTTCTGTTT  549

seq1  TCTGATGGCACAAGATGGTTGTCAGGGCTGCATTGGAACACCCACATTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGCACAAGATGGTTGTCAGGGCTGCATTGGAACACCCACATTCA  599

seq1  AGGCCGTGATAAAGGAGAGAGTGTGTTTTATATCTTGTCGCTTAGTCCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGTGATAAAGGAGAGAGTGTGTTTTATATCTTGTCGCTTAGTCCAG  649

seq1  TGGTTCTCAATCCCCCGAATGCTGTGACCCTTTTAATACAGTTAATTCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCAATCCCCCGAATGCTGTGACCCTTTTAATACAGTTAATTCCT  699

seq1  CGTGTGGTGGCAACACTCAATCATAAAATTATTTCGTTGCTACTTCATAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGGTGGCAACACTCAATCATAAAATTATTTCGTTGCTACTTCATAA  749

seq1  CTGTAATTTTGCTGTTGTTATGAATCATCATGTAAATATCTGACATGCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTTTGCTGTTGTTATGAATCATCATGTAAATATCTGACATGCAG  799

seq1  GATATCTGACTTGCAGGCTATCTGATACACAGGATAACTGACATGTATCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTGACTTGCAGGCTATCTGATACACAGGATAACTGACATGTATCT  849

seq1  GACATGTGACCCCTGCTAAAGGGTCGTTAAACCCCAAAGGGTCACACCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTGACCCCTGCTAAAGGGTCGTTAAACCCCAAAGGGTCACACCCA  899

seq1  CAGGTTCAGAATCACTACCTTAGTCAGAAATGCAATGGAATTC  941
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCAGAATCACTACCTTAGTCAGAAATGCAATGGAATTC  942