BAC Information

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BAC

Clone NameB6Ng01-020E15
Chromosome18 (Build37)
Map Location 30,093,101 - 30,223,583
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040930, 4930578E11Rik, LOC666073
Downstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020E15.bB6Ng01-020E15.g
ACCDH853131DH853132
length9661,074
definitionDH853131|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E15, 5' end.DH853132|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,093,101 - 30,094,016)(30,222,491 - 30,223,583)
sequence
tcttaaggaggccttaaattagagattccaaatcacactgcatgatggcc
aagtagcacttctgtgctagctacaagctctaaactaggtgcactcaact
aatggccactgggcgatgtacatccaagggtatctatgaatgcacccaac
cacatttgataatgttacatcacaatgttgtaggatggaatgcaatgctc
ctattagaaacttaagtgagtgcttattcatttcacattgctactaatac
aatattttaaccactccaaacttactccaccaacttgaaaatcagaagtc
attgaactaaaatcaggatatgggcaaggccatttcccttctggagaatt
tcagatggaatttgcgccttgctgcttcagccatttaaagttcctaaagt
tcccgtggacagtgctctggtggttaacatgcagaagaatgtgaatcgat
ccattcctatctccttgtactaaggtcaaatttaagtggatcaaggaact
ccacataaaaccagagacactgaaacttatagaggagaaagtggggacaa
gcctcaaagatatgggcacaggggaaaaaatcctgaatagaacagcaatg
gcttgtgctgtaagatcgagaatcgataaatgggacctcataaaattgca
aagcttctgtaagaaaaagacactgtcaataagacaaaaaggccaccaac
agattgggaaaggatctttatcaatcctaaatcagataggggactaatat
ctaatatatatataaagaactgaagaaagtagactccagaaaatcagata
accccattaaaaatggggctcagagctaaacaaagaattctcacctgagg
aataccgaatggctgagaagcacctgaaaaattttcagcatccttaatca
tcaggaaatgcaaatcaaaacaaccctgagattcactcacacagtcagat
gactagatcaaaattc
gaattcataagaagatgtaggtgtgcatatatgagggtatatatttgaat
ttatggatgtgagtttagtgtatatctctgagagtatatgagcacactca
tataggcacatataactatttaaagatttttaaatagctttacaactcta
agtagagaaattatggtctgaagaattcaggagcatcttcaggaagaagg
cagatggtagtatgatgtgaacagttttatggatggaggacattcagtgg
gaatgttattcctgaaggaaagatgaggacaagatatagagtatttggaa
gccatgccaaatactgatgagagttaggcaacccagactacaacggaatg
gagaaagcagtctctagaggaagctttaccactgggatgaaaaggcagag
cctcagctcttggggtgccagtagctatgatttcacactgggtctggctg
cggaactccattttcttcctaaaaaccattagccttgtatcttgcagaga
tgcatgtcagtacatgtctgctttggctgtggaagaaaaggtccatctct
tagtatatagattaccattatgtgcttagctgcattgattttgagatctg
caggcgatggcttctcagactcaaatttgtgaaatttttaaaggcagcca
attctgaactatcagtaagcattcagtagtaagtaatacaaaactttgat
ttatagatgctgactaggcaacagggatggattcttctcacaacctgttt
agaggtgaacagggacagggctcagttcagttggtttatgatatcagggc
taaattttgttattctcttaatttacttccatttgtctcagatggccatg
gccattatactcataatcagataggagatgaaaagatggaggagccagct
ctccctggaaaaagcaaattaagagagcttctctttgctttctctttcca
tttgtgagaacaggcaggaaaacagaatcggaatggtgtttgttggcaca
actattgccacaatcatttgtctgttttccatgatcctgtttgtgaaagt
aaatcagaaaaccatgtgaactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_30093101_30094016
seq2: B6Ng01-020E15.b_54_967

seq1  TCTTAAGGAGGCCTTAAATTAGAGATTCCAAATCACACTGCATGATGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGGAGGCCTTAAATTAGAGATTCCAAATCACACTGCATGATGGCC  50

seq1  AAGTAGCACTTCTGTGCTAGCTACAAGCTCTAAACTAGGTGCACTCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCACTTCTGTGCTAGCTACAAGCTCTAAACTAGGTGCACTCAACT  100

seq1  AATGGCCACTGGGCGATGTACATCCAAGGGTATCTATGAATGCACCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCACTGGGCGATGTACATCCAAGGGTATCTATGAATGCACCCAAC  150

seq1  CACATTTGATAATGTTACATCACAATGTTGTAGGATGGAATGCAATGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGATAATGTTACATCACAATGTTGTAGGATGGAATGCAATGCTC  200

seq1  CTATTAGAAACTTAAGTGAGTGCTTATTCATTTCACATTGCTACTAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGAAACTTAAGTGAGTGCTTATTCATTTCACATTGCTACTAATAC  250

seq1  AATATTTTAACCACTCCAAACTTACTCCACCAACTTGAAAATCAGAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTAACCACTCCAAACTTACTCCACCAACTTGAAAATCAGAAGTC  300

seq1  ATTGAACTAAAATCAGGATATGGGCAAGGCCATTTCCCTTCTGGAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTAAAATCAGGATATGGGCAAGGCCATTTCCCTTCTGGAGAATT  350

seq1  TCAGATGGAATTTGCGCCTTGCTGCTTCAGCCATTTAAAGTTCCTAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGAATTTGCGCCTTGCTGCTTCAGCCATTTAAAGTTCCTAAAGT  400

seq1  TCCCGTGGACAGTGCTCTGGTGGTTAACATGCAGAAGAATGTGAATCGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTGGACAGTGCTCTGGTGGTTAACATGCAGAAGAATGTGAATCGAT  450

seq1  CCATTCCTATCTCCTTGTACTAAGGTCAAATTTAAGTGGATCAAGGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTATCTCCTTGTACTAAGGTCAAATTTAAGTGGATCAAGGAACT  500

seq1  CCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGACAA  550

seq1  GCCTCAAAGATATGGGCACAGGGGAAAAAATCCTGAATAGAACAGCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAAGATATGGGCACAGGGGAAAAAATCCTGAATAGAACAGCAATG  600

seq1  GCTTGTGCTGTAAGATCGAGAATCGATAAATGGGACCTCATAAAATTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCTGTAAGATCGAGAATCGATAAATGGGACCTCATAAAATTGCA  650

seq1  AAGCTTCTGTAAGAAAAAGACACTGTCAATAAGACAAAAAGGCCACCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTGTAAGAAAAAGACACTGTCAATAAGACAAAAAGGCCACCAAC  700

seq1  AGATTGGGAAAGGATCTTTATCAATCCTAAATCAGATAGGGGACTAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGGAAAGGATCTTTATCAATCCTAAATCAGATAGGGGACTAATAT  750

seq1  CTAATATATATATAAAGAACTGAAGAAGGTAGACTCCAGAAAATCAGATA  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTAATATATATATAAAGAACTGAAGAAAGTAGACTCCAGAAAATCAGATA  800

seq1  ACCCCATTAAAAATGGGGCTCAGAGCTAAACAAAGAATTCTCACCTGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATTAAAAATGGGGCTCAGAGCTAAACAAAGAATTCTCACCTGAGG  850

seq1  AATACCGAATGGCTGAGAAGCACCTGAAAAAATTTTCAGCATCCTTAATC  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATACCGAATGGCTGAGAAGCACCTG-AAAAATTTTCAGCATCCTTAATC  899

seq1  ATCAGGGAAATGCAAA  916
      |||| |||||||||||
seq2  ATCA-GGAAATGCAAA  914

seq1: chr18_30222491_30223583
seq2: B6Ng01-020E15.g_67_1140 (reverse)

seq1  ACAGATTCACATGGGTTTTCTTGATTTAAACTTTCAACAAAACAGGATCA  50
      |||| ||||||| ||||||| ||||||  |||||||   |||||||||||
seq2  ACAG-TTCACAT-GGTTTTC-TGATTT--ACTTTCA--CAAACAGGATCA  43

seq1  CTAGGAAAACAGTCAAATGATTGTGGCAATAGTTTGTGCCAAGCAAACAC  100
         ||||||||| ||||||||||||||||||| ||||||||| |||||||
seq2  --TGGAAAACAGACAAATGATTGTGGCAATAG-TTGTGCCAA-CAAACAC  89

seq1  CATTCCGATTCCTGTTCTCCTTGCCATGTTCCTCACAAAATGGAAAGAGA  150
      |||||||||| ||||| ||| |||| |||| ||||| |||||||||||||
seq2  CATTCCGATT-CTGTTTTCC-TGCC-TGTT-CTCAC-AAATGGAAAGAGA  134

seq1  AAGCAAAGATGAAGCTCTCTTAACTTTGCCTTTTTCAGGGAAGAGCTGGC  200
      ||||||||| ||||||||||||| ||||| |||| ||||| |||||||||
seq2  AAGCAAAGA-GAAGCTCTCTTAA-TTTGCTTTTTCCAGGG-AGAGCTGGC  181

seq1  TCCTCCCTTCTTTTCTTCTCCTAATCTGATTATGAGTATAATGGCCATGG  250
      |||| || ||||||| |||||| |||||||||||||||||||||||||||
seq2  TCCT-CCATCTTTTCATCTCCT-ATCTGATTATGAGTATAATGGCCATGG  229

seq1  CCATCTTGAGAC-AATAGGAGTAAATTAAGAGAATAACCAAATTTAGCCC  299
      ||||| |||||| ||| | ||||||||||||||||||| |||||||||||
seq2  CCATC-TGAGACAAATGGAAGTAAATTAAGAGAATAACAAAATTTAGCCC  278

seq1  TGATATCATTAAACCACTGAACTGAGCCCTGTCCCTGTTCACCTCTAAAC  349
      ||||||||| || | |||||||||||||||||||||||||||||||||||
seq2  TGATATCATAAACCAACTGAACTGAGCCCTGTCCCTGTTCACCTCTAAAC  328

seq1  AGGTTGTGAGAAGAATCCATCCCTGTTGCCTAGTCAGCATCTAT-AATC-  397
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  AGGTTGTGAGAAGAATCCATCCCTGTTGCCTAGTCAGCATCTATAAATCA  378

seq1  AAGTTTTGTATTACTTACTACTGAATGCTTACTGATAGTTCAGAATTGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGTATTACTTACTACTGAATGCTTACTGATAGTTCAGAATTGGC  428

seq1  TGCCTTTAAAAATTTCACAAATTTGAGTCTGAGAAGCCATCGCCTGCAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAAAAATTTCACAAATTTGAGTCTGAGAAGCCATCGCCTGCAGA  478

seq1  TCTCAAAATCAATGCAGCTAAGCACATAATGGTAATCTATATACTAAGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAATCAATGCAGCTAAGCACATAATGGTAATCTATATACTAAGAG  528

seq1  ATGGACCTTTTCTTCCACAGCCAAAGCAGACATGTACTGACATGCATCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCTTTTCTTCCACAGCCAAAGCAGACATGTACTGACATGCATCTC  578

seq1  TGCAAGATACAAGGCTAATGGTTTTTAGGAAGAAAATGGAGTTCCGCAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGATACAAGGCTAATGGTTTTTAGGAAGAAAATGGAGTTCCGCAGC  628

seq1  CAGACCCAGTGTGAAATCATAGCTACTGGCACCCCAAGAGCTGAGGCTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCAGTGTGAAATCATAGCTACTGGCACCCCAAGAGCTGAGGCTCT  678

seq1  GCCTTTTCATCCCAGTGGTAAAGCTTCCTCTAGAGACTGCTTTCTCCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCATCCCAGTGGTAAAGCTTCCTCTAGAGACTGCTTTCTCCATT  728

seq1  CCGTTGTAGTCTGGGTTGCCTAACTCTCATCAGTATTTGGCATGGCTTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGTAGTCTGGGTTGCCTAACTCTCATCAGTATTTGGCATGGCTTCC  778

seq1  AAATACTCTATATCTTGTCCTCATCTTTCCTTCAGGAATAACATTCCCAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCTATATCTTGTCCTCATCTTTCCTTCAGGAATAACATTCCCAC  828

seq1  TGAATGTCCTCCATCCATAAAACTGTTCACATCATACTACCATCTGCCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCCTCCATCCATAAAACTGTTCACATCATACTACCATCTGCCTT  878

seq1  CTTCCTGAAGATGCTCCTGAATTCTTCAGACCATAATTTCTCTACTTAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAAGATGCTCCTGAATTCTTCAGACCATAATTTCTCTACTTAGA  928

seq1  GTTGTAAAGCTATTTAAAAATCTTTAAATAGTTATATGTGCCTATATGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAAGCTATTTAAAAATCTTTAAATAGTTATATGTGCCTATATGAG  978

seq1  TGTGCTCATATACTCTCAGAGATATACACTAAACTCACATCCATAAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCATATACTCTCAGAGATATACACTAAACTCACATCCATAAATTC  1028

seq1  AAATATATACCCTCATATATGCACACCTACATCTTCTTATGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATACCCTCATATATGCACACCTACATCTTCTTATGAATTC  1074