BAC Information

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BAC

Clone NameB6Ng01-020N11
Chromosome18 (Build37)
Map Location 29,059,346 - 29,159,533
singlet/doubletdoublet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N11.bB6Ng01-020N11.g
ACCDH853524DH853525
length8911,171
definitionDH853524|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N11, 5' end.DH853525|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,158,643 - 29,159,533)(29,059,346 - 29,060,541)
sequence
gaattccaccatcaaatctggattgctgaccatagactgaacagtttata
tattcttggaatttcacttatgagacagttatagttggctactaagaaca
aatcctccaagttactgtaataaattcctttacgtatataacatatttaa
actaaaatgtatcatatatgaatatataaaatataaagaaaatataaatt
ccctttacacacacacacacacacacacacacacacacacacacacaaat
tcagttcactcagagaatcttgaaaaataaacatagtggtgtctatatct
aatgatactgacctatataaaatgatgtgctaagttagatattattttac
aatttctcattatgcacgtgcaagtaatagtaacaagaataatggcaata
ataaataaggacaaacgtttagatgtaataaagctgtttatttctggata
gcagtgataacttcatgacttaactctcaattcataggggctttcattat
gtacatatacattttgtaatgttaaacatgtcttcattaaacaatataca
aaataaacagagcatgtcaagggcactgccttccaaaattcataccacct
cccactagaaaaagtaggccatgtttgttactttaaaccctcttggtgat
gaacctagttcccaggtatatgaaaaaaattggccaaatttaagggaagc
aggcttagtctccctagcctctgagaacagtatcagtagaacacatcact
tatgactatgcattcatatgtctccatctatcacaccagcagcgctatgc
ggaaaaaagattttcagagaaattttcaattttccagcttagagactttg
taaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta
gaattctccttggaatacaatcttttctctttaaagcagaaatgccatat
gttgtatattctcagggtctaaagtatagaagggttcagggaggggacag
aacttaacttcttcaggtctctcctggttggtgtatgtacaagatttact
gtggtgatgggttgttgaccattgatttcaacactgggatatgtaggaga
cagattgacacaggtttcattaaaatttaagaaactcagctccaaggaga
gcatgagtaacttccttatacatgacaggaatccccacagatggcatttc
accctgctaaaggaattaagctagcaaaagaagcactgtctacaacatcc
aaatccccaaatctgcaggctcatctacacagatattctttgtactgtca
ttattaagtaccttagggtatctctgaaagacatgaggccaagagggagc
aaccacagtaccttttctcccccttaagcatgctggtggcatagggaagg
tgggactataaagtaaacacactacaacacagggccggggcattcagtgg
actgggtctaattgctgacccttttttcactgggaagagctgagatgaaa
ttcttattacaattacacagaatggcttccccaaattggcagtgattaaa
ctattaggcaaatgcataaatgaatgttgtatttgattcctggtccaatt
aacttcctttctttttcttccctctcagctccctaacattatgctcttaa
aatctacatttcatcttcaaatatttaagttgtcaaggaaaaataaacta
gccatttcccattcattatattgtgtcaaacaggacatgaaggagacagc
tttctttctttgctgtctctatacttgtcaatcaaaatcacagtaattaa
acagagatggcacggctttcaaatcagaacaaaggcatagcatttatagg
aggaagagaaaagtaattaaaataaataaatactgaagcccagctctgtt
ctcagtgccgtcctggagctgcagtttaccagctccagtcaacttctttc
accttcatttatctcttttgacttagcagaaggatatgcaataacctatc
tctcacaagttagctaggactcaattacttactccttgaatggatcatta
atggactcatttctttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29158643_29159533
seq2: B6Ng01-020N11.b_46_936 (reverse)

seq1  TACACACACACACACACACACACACACACACACACACTTTACAAAGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACACACACACACACACTTTACAAAGTCTC  50

seq1  TAAGCTGGAAAATTGAAAATTTCTCTGAAAATCTTTTTTCCGCATAGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGGAAAATTGAAAATTTCTCTGAAAATCTTTTTTCCGCATAGCGC  100

seq1  TGCTGGTGTGATAGATGGAGACATATGAATGCATAGTCATAAGTGATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGTGATAGATGGAGACATATGAATGCATAGTCATAAGTGATGTG  150

seq1  TTCTACTGATACTGTTCTCAGAGGCTAGGGAGACTAAGCCTGCTTCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGATACTGTTCTCAGAGGCTAGGGAGACTAAGCCTGCTTCCCTT  200

seq1  AAATTTGGCCAATTTTTTTCATATACCTGGGAACTAGGTTCATCACCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGCCAATTTTTTTCATATACCTGGGAACTAGGTTCATCACCAAG  250

seq1  AGGGTTTAAAGTAACAAACATGGCCTACTTTTTCTAGTGGGAGGTGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTAAAGTAACAAACATGGCCTACTTTTTCTAGTGGGAGGTGGTAT  300

seq1  GAATTTTGGAAGGCAGTGCCCTTGACATGCTCTGTTTATTTTGTATATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGGAAGGCAGTGCCCTTGACATGCTCTGTTTATTTTGTATATTG  350

seq1  TTTAATGAAGACATGTTTAACATTACAAAATGTATATGTACATAATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGAAGACATGTTTAACATTACAAAATGTATATGTACATAATGAAA  400

seq1  GCCCCTATGAATTGAGAGTTAAGTCATGAAGTTATCACTGCTATCCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTATGAATTGAGAGTTAAGTCATGAAGTTATCACTGCTATCCAGAA  450

seq1  ATAAACAGCTTTATTACATCTAAACGTTTGTCCTTATTTATTATTGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGCTTTATTACATCTAAACGTTTGTCCTTATTTATTATTGCCAT  500

seq1  TATTCTTGTTACTATTACTTGCACGTGCATAATGAGAAATTGTAAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTGTTACTATTACTTGCACGTGCATAATGAGAAATTGTAAAATAA  550

seq1  TATCTAACTTAGCACATCATTTTATATAGGTCAGTATCATTAGATATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAACTTAGCACATCATTTTATATAGGTCAGTATCATTAGATATAGA  600

seq1  CACCACTATGTTTATTTTTCAAGATTCTCTGAGTGAACTGAATTTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTATGTTTATTTTTCAAGATTCTCTGAGTGAACTGAATTTGTGTG  650

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGGGAATTTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGGGAATTTATAT  700

seq1  TTTCTTTATATTTTATATATTCATATATGATACATTTTAGTTTAAATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATATTTTATATATTCATATATGATACATTTTAGTTTAAATATG  750

seq1  TTATATACGTAAAGGAATTTATTACAGTAACTTGGAGGATTTGTTCTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACGTAAAGGAATTTATTACAGTAACTTGGAGGATTTGTTCTTAG  800

seq1  TAGCCAACTATAACTGTCTCATAAGTGAAATTCCAAGAATATATAAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAACTATAACTGTCTCATAAGTGAAATTCCAAGAATATATAAACTG  850

seq1  TTCAGTCTATGGTCAGCAATCCAGATTTGATGGTGGAATTC  891
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTATGGTCAGCAATCCAGATTTGATGGTGGAATTC  891

seq1: chr18_29059346_29060541
seq2: B6Ng01-020N11.g_67_1237

seq1  GAATTCTCCTTGGAATACAATCTTTTCTCTTTAAAGCAGAAATGCCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTGGAATACAATCTTTTCTCTTTAAAGCAGAAATGCCATAT  50

seq1  GTTGTATATTCTCAGGGTCTAAAGTATAGAAGGGTTCAGGGAGGGGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATATTCTCAGGGTCTAAAGTATAGAAGGGTTCAGGGAGGGGACAG  100

seq1  AACTTAACTTCTTCAGGTCTCTCCTGGTTGGTGTATGTACAAGATTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACTTCTTCAGGTCTCTCCTGGTTGGTGTATGTACAAGATTTACT  150

seq1  GTGGTGATGGGTTGTTGACCATTGATTTCAACACTGGGATATGTAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATGGGTTGTTGACCATTGATTTCAACACTGGGATATGTAGGAGA  200

seq1  CAGATTGACACAGGTTTCATTAAAATTTAAGAAACTCAGCTCCAAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGACACAGGTTTCATTAAAATTTAAGAAACTCAGCTCCAAGGAGA  250

seq1  GCATGAGTAACTTCCTTATACATGACAGGAATCCCCACAGATGGCATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGTAACTTCCTTATACATGACAGGAATCCCCACAGATGGCATTTC  300

seq1  ACCCTGCTAAAGGAATTAAGCTAGCAAAAGAAGCACTGTCTACAACATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTAAAGGAATTAAGCTAGCAAAAGAAGCACTGTCTACAACATCC  350

seq1  AAATCCCCAAATCTGCAGGCTCATCTACACAGATATTCTTTGTACTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCAAATCTGCAGGCTCATCTACACAGATATTCTTTGTACTGTCA  400

seq1  TTATTAAGTACCTTAGGGTATCTCTGAAAGACATGAGGCCAAGAGGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAGTACCTTAGGGTATCTCTGAAAGACATGAGGCCAAGAGGGAGC  450

seq1  AACCACAGTACCTTTTCTCCCCCTTAAGCATGCTGGTGGCATAGGGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGTACCTTTTCTCCCCCTTAAGCATGCTGGTGGCATAGGGAAGG  500

seq1  TGGGACTATAAAGTAAACACACTACAACACAGGGCCGGGGCATTCAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTATAAAGTAAACACACTACAACACAGGGCCGGGGCATTCAGTGG  550

seq1  ACTGGGTCTAATTGCTGACCCTTTTTTCACTGGGAAGAGCTGAGATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTCTAATTGCTGACCCTTTTTTCACTGGGAAGAGCTGAGATGAAA  600

seq1  TTCTTATTACAATTACACAGAATGGCTTCCCCAAATTGGCAGTGATTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTACAATTACACAGAATGGCTTCCCCAAATTGGCAGTGATTAAA  650

seq1  CTATTAGGCAAATGCATAAATGAATGTTGTATTTGATTCCTGGTCCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGGCAAATGCATAAATGAATGTTGTATTTGATTCCTGGTCCAATT  700

seq1  AACTTCCTTTCTTTTTCTTCCCTCTCAGCTCCCTAACATTATGCTCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTTTCTTTTTCTTCCCTCTCAGCTCCCTAACATTATGCTCTTAA  750

seq1  AATCTACATTTCATCTTCAAATATTTAAGTTGTCAAGGAAAAAATAAACT  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATCTACATTTCATCTTCAAATATTTAAGTTGTCAAGG-AAAAATAAACT  799

seq1  AGCCATTTCCCATTCATTATATTGTGTCAAACAGGACATGAAGGAGACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTCCCATTCATTATATTGTGTCAAACAGGACATGAAGGAGACAG  849

seq1  CTTTCTTTCTTTGCTGTCCTCTATACTTGTCAATCAAAATCACAGTAATT  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTGCTGT-CTCTATACTTGTCAATCAAAATCACAGTAATT  898

seq1  AAACAGAGATGGCACGGCTTTCAAATCAAGAACAAAGGCATAGGCATTTA  950
      ||||||||||||||||||||||||||| |||||||||||||| |||||| 
seq2  AAACAGAGATGGCACGGCTTTCAAATC-AGAACAAAGGCATA-GCATTT-  945

seq1  ATAGGAGGAAGAGAAAAGTAATTAAAATAAATAAATACTGAAGCCCCAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAGGAGGAAGAGAAAAGTAATTAAAATAAATAAATACTGAAG-CCCAGC  994

seq1  TCTGTTCTCAGTGCCGTCCT-GAGCTGCAGTCTTACCAGCTCCCAGTCCA  1049
      |||||||||||||||||||| |||||||||| ||||||||| ||||| ||
seq2  TCTGTTCTCAGTGCCGTCCTGGAGCTGCAGT-TTACCAGCT-CCAGT-CA  1041

seq1  ACTCCTTTCAACCTTCATTTATCTCTTTTGACTTTCAGCTAGAAGGATAA  1099
      ||| ||||| ||||||||||||||||||||||||  ||| |||||||| |
seq2  ACTTCTTTC-ACCTTCATTTATCTCTTTTGACTT--AGC-AGAAGGAT-A  1086

seq1  TGCAGATAGAACCTATCTCTCACAATGTATGCTAGGACTTCAATATTACA  1149
      ||||   | |||||||||||||||| ||  |||||||| |||  ||||| 
seq2  TGCA---ATAACCTATCTCTCACAA-GTTAGCTAGGAC-TCA--ATTAC-  1128

seq1  TTACATCCTTGAATGCAATCATTATATGCACTCATTTTCTTTTTTTT  1196
      |||| ||||||||||  ||||||| ||| ||||| ||||||||||||
seq2  TTAC-TCCTTGAATG-GATCATTA-ATGGACTCA-TTTCTTTTTTTT  1171