BAC Information

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BAC

Clone NameB6Ng01-021F01
Chromosome18 (Build37)
Map Location 42,231,964 - 42,417,216
singlet/doubletdoublet
Overlap geneSh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929
Upstream geneLOC677182, LOC100041988, LOC100041997, Prelid2, Gm851
Downstream geneLOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021F01.bB6Ng01-021F01.g
ACCDH853855DH853856
length1,061951
definitionDH853855|Mus musculus domesticus DNA, BAC clone: B6Ng01-021F01, 5' end.DH853856|Mus musculus domesticus DNA, BAC clone: B6Ng01-021F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,231,964 - 42,233,094)(42,416,259 - 42,417,216)
sequence
gaattctgtagaatttcaggaatggcagacaaaattctgttgttctaagc
caataacttgttatgacagctacagagagttcacacagcgctttccaaaa
gtcctgggaaattcttcaaacatgattcctacatactaacttcgcctgca
ttctatccatatttcttgaccaatcttaaatattttgtatctttttactt
tggtggttacttaagaattatcatcttctgattctactttaaagtaactc
atatacttatccctataaataatttgtttgtaaatacaattgagttatgt
tatgcacacatttaaaagaaatttgtacttctactcaatattttatttta
ggcctgagatttccattttagaaatgcaataaattattttgatcaaaatt
attaattttttatttttttatacttgtcttagggttactatacccgtgag
taaacaccataactaaaagcagcctgacaaagaaagggtttatttagctt
gtgcttccacaccactgctcatcactgaagaaagtaaggaaaggaattca
agcaggaacctggaggtagaagctgatgcagaggccgtggaggggtgctg
cttactggtttgctacaaaaggtttattcagcctggtttcttatagaacc
cagaaccaccagcccagggatggcaccacccacaatagactgggccctca
cccattaaatcactaattaagaaaatatcttatagctggatcttatgaag
gcatttttctcagttgaggtcccttcctctctgatgactctagtttatgt
caacttgacataaaactagacagcacatctgtgaaagtcacttttactac
ttctcttcatgttatcaacccatttctgaccaaacatgctactagaaccc
tcttagcttaattagcataatgcgtaaggatttctaatatataaatatgt
gtttatgcacattatttatttgaagtgctgtttaaatctagatccaatgt
ctcatgctaaactgatttacttcattaagtattaattaagaagaggagag
gaaggaggaag
gaattcacacaggtccatctgcctctgccttccgagtggctggattcaag
gtgtgcgccaccccttctgggcacagtaactactttttagaatcttgttc
ctttacatttgaaggtaggcatggggaatttgagctgtcagtgagcagct
tggttctttgtgaacctgacttcttttttttctcttagtttttcacacag
ggtctcatgtagcccaggctggcctcaggcttgctgtgtggctgagagtg
aacttgaatatttggccctcttccttcctcgtcctaagtgtggggatcac
aggcgtgtcctggcatccctggctcttactgtctaaagccagctctggtg
tctcttcgtgtttaatagggaagaaaaggaactgctaaagtagacttctt
gaaggagatcgagaaagaggcccagcagaagtgggaagctgagaaagtgt
ttgaagtcagtgcctcccggctggagaagcagaagcagagcaggtgagtc
ccagcagccgcggggtaactgccccaggacgagggaggccagaaagtgag
acaatgtctgagtgggctgaaggtcccctgttctactgagtagtcaaggc
aactctctctatggaattcttagagtttgttcttattaaaatgtaaaaca
aaataaaataaaacaaaacacccaaaaatcctcatttatcagtgtgtgcg
tcatgacatgtgtggaggtcagaggacaacttgcaggagtcccttccctt
ctactgtgtgggttctgagggttgaccttgggccttagcctgctgatcca
ccacaccagccgactcatatgttttaaataagcatttttcactttttgac
aaagagaatgttctgaagtttttatttactgactgataaaggaaagggtt
tttgttgtggttgagagattctactgaaattaccttcatacaatacaatt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42231964_42233094
seq2: B6Ng01-021F01.b_48_1108

seq1  GAATTCTGTAGAATTTCAGGAATGGCAGACAAAATTCTGTTGTTCTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGAATTTCAGGAATGGCAGACAAAATTCTGTTGTTCTAAGC  50

seq1  CAATAACTTGTTATGACAGCTACAGAGAGTTCACACAGCGCTTTCCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACTTGTTATGACAGCTACAGAGAGTTCACACAGCGCTTTCCAAAA  100

seq1  GTCCTGGGAAATTCTTCAAACATGATTCCTACATACTAACTTCGCCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGAAATTCTTCAAACATGATTCCTACATACTAACTTCGCCTGCA  150

seq1  TTCTATCCATATTTCTTGACCAATCTTAAATATTTTGTATCTTTTTACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCCATATTTCTTGACCAATCTTAAATATTTTGTATCTTTTTACTT  200

seq1  TGGTGGTTACTTAAGAATTATCATCTTCTGATTCTACTTTAAAGTAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTACTTAAGAATTATCATCTTCTGATTCTACTTTAAAGTAACTC  250

seq1  ATATACTTATCCCTATAAATAATTTGTTTGTAAATACAATTGAGTTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTATCCCTATAAATAATTTGTTTGTAAATACAATTGAGTTATGT  300

seq1  TATGCACACATTTAAAAGAAATTTGTACTTCTACTCAATATTTTATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACACATTTAAAAGAAATTTGTACTTCTACTCAATATTTTATTTTA  350

seq1  GGCCTGAGATTTCCATTTTAGAAATGCAATAAATTATTTTGATCAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGATTTCCATTTTAGAAATGCAATAAATTATTTTGATCAAAATT  400

seq1  ATTAATTTTTTATTTTTTTATACTTGTCTTAGGGTTACTATACCCGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTTTATTTTTTTATACTTGTCTTAGGGTTACTATACCCGTGAG  450

seq1  TAAACACCATAACTAAAAGCAGCCTGACAAAGAAAGGGTTTATTTAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACCATAACTAAAAGCAGCCTGACAAAGAAAGGGTTTATTTAGCTT  500

seq1  GTGCTTCCACACCACTGCTCATCACTGAAGAAAGTAAGGAAAGGAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCACACCACTGCTCATCACTGAAGAAAGTAAGGAAAGGAATTCA  550

seq1  AGCAGGAACCTGGAGGTAGAAGCTGATGCAGAGGCCGTGGAGGGGTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAACCTGGAGGTAGAAGCTGATGCAGAGGCCGTGGAGGGGTGCTG  600

seq1  CTTACTGGTTTGCTACAAAAGGTTTATTCAGCCTGGTTTCTTATAGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGGTTTGCTACAAAAGGTTTATTCAGCCTGGTTTCTTATAGAACC  650

seq1  CAGAACCACCAGCCCAGGGATGGCACCACCCACAATAGACTGGGCCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCACCAGCCCAGGGATGGCACCACCCACAATAGACTGGGCCCTCA  700

seq1  CCCATTAAATCACTAATTAAGAAAATATCTTATAGCTGGATCTTATGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAAATCACTAATTAAGAAAATATCTTATAGCTGGATCTTATGAAG  750

seq1  GCATTTTTCTCAGTTGAGGTCCCTTCCTCTCTGATGACTCTAGTTTATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTCTCAGTTGAGGTCCCTTCCTCTCTGATGACTCTAGTTTATGT  800

seq1  CAACTTGACATAAAACTAGACAGCACATCTGTGAAAGTCACTTTTACTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGACATAAAACTAGACAGCACATCTGTGAAAGTCACTTTTACTAC  850

seq1  TTCTCTTCATGTTATCAACCCATTTCTGACCAAACATGCTACTAGAACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCATGTTATCAACCCATTTCTGACCAAACATGCTACTAGAACCC  900

seq1  TCTTAGCTTAATTAGCATAATGCGTAAGGATTTTCTAATTATTAATAAAT  950
      |||||||||||||||||||||||||||||| ||||||| |||  ||||||
seq2  TCTTAGCTTAATTAGCATAATGCGTAAGGA-TTTCTAA-TAT--ATAAAT  946

seq1  ATGTGTTTATGCACATTTATTTAATTTTGAAAAGTGGCTGTTTTTAAATC  1000
      ||||||||||||||| |||||||  ||||  |||| ||||  ||||||||
seq2  ATGTGTTTATGCACA-TTATTTA--TTTG--AAGT-GCTG--TTTAAATC  988

seq1  TTAGATCCCAAATGTCTCATGCTTAAAACTGAATTTTACTTTCATTAAAG  1050
       |||||||  |||||||||||||  |||||||  ||||| ||||||||  
seq2  -TAGATCC--AATGTCTCATGCT--AAACTGA--TTTAC-TTCATTAA--  1028

seq1  TTATTAAATTAAAGAAGAAGGAGGAGGAA--AGGAAGGAAGGGAGAGAGA  1098
       ||||||  | |||||| |||| ||||||  ||||||             
seq2  GTATTAA--TTAAGAAG-AGGA-GAGGAAGGAGGAAG-------------  1061

seq1  GACAGACAGAAAGAGAGAGAGGAAGGAAGGAAG  1131
                                       
seq2  ---------------------------------  1061

seq1: chr18_42416259_42417216
seq2: B6Ng01-021F01.g_66_1016 (reverse)

seq1  AAATTGTATTTGTATTGGAGGTAATTATCAGTAAGAATCTCTCAACAACA  50
      |||||||| ||||| || |||||||| ||||| ||||||||||||| |||
seq2  AAATTGTA-TTGTA-TGAAGGTAATT-TCAGT-AGAATCTCTCAACCACA  46

seq1  ACAAAAACCCTTTCCTTTTATCAGTCAGTAAATATAAAACTTCAGAACAT  100
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  ACAAAAACCCTTTCC-TTTATCAGTCAGTAAATA-AAAACTTCAGAACAT  94

seq1  TCTCCTTTGTCAAAAAGTGAAAAATGCTAATTTTAAACATCTGAGTCGGC  150
      ||| |||||||||||||||||||||||| |||| |||||| |||||||||
seq2  TCT-CTTTGTCAAAAAGTGAAAAATGCTTATTTAAAACATATGAGTCGGC  143

seq1  TGGTGTGGTGGATCAGCAGGCTAAGGCCCAAGGTCAACCCTCAGAACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGGTGGATCAGCAGGCTAAGGCCCAAGGTCAACCCTCAGAACCCA  193

seq1  CACAGTAGAAGGGAAGGGACTCCTGCAAGTTGTCCTCTGACCTCCACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGAAGGGAAGGGACTCCTGCAAGTTGTCCTCTGACCTCCACACA  243

seq1  TGTCATGACGCACACACTGATAAATGAGGATTTTTGGGTGTTTTGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGACGCACACACTGATAAATGAGGATTTTTGGGTGTTTTGTTTTA  293

seq1  TTTTATTTTGTTTTACATTTTAATAAGAACAAACTCTAAGAATTCCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTGTTTTACATTTTAATAAGAACAAACTCTAAGAATTCCATAG  343

seq1  AGAGAGTTGCCTTGACTACTCAGTAGAACAGGGGACCTTCAGCCCACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTGCCTTGACTACTCAGTAGAACAGGGGACCTTCAGCCCACTCA  393

seq1  GACATTGTCTCACTTTCTGGCCTCCCTCGTCCTGGGGCAGTTACCCCGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTCTCACTTTCTGGCCTCCCTCGTCCTGGGGCAGTTACCCCGCG  443

seq1  GCTGCTGGGACTCACCTGCTCTGCTTCTGCTTCTCCAGCCGGGAGGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGGACTCACCTGCTCTGCTTCTGCTTCTCCAGCCGGGAGGCACT  493

seq1  GACTTCAAACACTTTCTCAGCTTCCCACTTCTGCTGGGCCTCTTTCTCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAAACACTTTCTCAGCTTCCCACTTCTGCTGGGCCTCTTTCTCGA  543

seq1  TCTCCTTCAAGAAGTCTACTTTAGCAGTTCCTTTTCTTCCCTATTAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCAAGAAGTCTACTTTAGCAGTTCCTTTTCTTCCCTATTAAACA  593

seq1  CGAAGAGACACCAGAGCTGGCTTTAGACAGTAAGAGCCAGGGATGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAGACACCAGAGCTGGCTTTAGACAGTAAGAGCCAGGGATGCCAGG  643

seq1  ACACGCCTGTGATCCCCACACTTAGGACGAGGAAGGAAGAGGGCCAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCCTGTGATCCCCACACTTAGGACGAGGAAGGAAGAGGGCCAAATA  693

seq1  TTCAAGTTCACTCTCAGCCACACAGCAAGCCTGAGGCCAGCCTGGGCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTCACTCTCAGCCACACAGCAAGCCTGAGGCCAGCCTGGGCTAC  743

seq1  ATGAGACCCTGTGTGAAAAACTAAGAGAAAAAAAAGAAGTCAGGTTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACCCTGTGTGAAAAACTAAGAGAAAAAAAAGAAGTCAGGTTCACA  793

seq1  AAGAACCAAGCTGCTCACTGACAGCTCAAATTCCCCATGCCTACCTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAAGCTGCTCACTGACAGCTCAAATTCCCCATGCCTACCTTCAA  843

seq1  ATGTAAAGGAACAAGATTCTAAAAAGTAGTTACTGTGCCCAGAAGGGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGGAACAAGATTCTAAAAAGTAGTTACTGTGCCCAGAAGGGGTG  893

seq1  GCGCACACCTTGAATCCAGCCACTCGGAAGGCAGAGGCAGATGGACCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACACCTTGAATCCAGCCACTCGGAAGGCAGAGGCAGATGGACCTGT  943

seq1  GTGAATTC  958
      ||||||||
seq2  GTGAATTC  951