BAC Information

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BAC

Clone NameB6Ng01-021K06
Chromosome18 (Build37)
Map Location 89,133,276 - 89,267,888
singlet/doubletdoublet
Overlap geneRttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneCd226, Dok6, LOC383320, LOC620693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021K06.bB6Ng01-021K06.g
ACCDH854086DH854087
length1,004977
definitionDH854086|Mus musculus domesticus DNA, BAC clone: B6Ng01-021K06, 5' end.DH854087|Mus musculus domesticus DNA, BAC clone: B6Ng01-021K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,267,316 - 89,267,888)(89,133,276 - 89,134,111)
sequence
gaattcctaagcagaaaaatcttgcaactcaaacacaaaagtaattttta
catggacataagcaatgctgtggactggcattgtttaggaccacagcatc
tttcactttcacacctcaaaggcaacacaaatccacacaattcaaaagat
cttaagaaatgttcatattatatgctgaactggctcatacctttagctgc
catttggccttagtcacacacataaaaatagtactccaagctcactgcag
actgtaacatgtatttcagctgaaagatggaggagatttctggctcattt
ttttgtatgattcatctgccctaagtttctcctggagccatttcagatca
ttccaagtataaaacacatgatcaaaacctccccaaatactgagaacaga
ggggataaaacaaaatataaactttggacacaggacctagacactctgtg
ttggaactgacctgaaagtcttctctctgaggactatagttcatggtagt
agatggcatcgttctggcttccaaaggagggaagcaactaagagtcctaa
ttagataacataacatgtttatgatctataacaatgactagcatggcaca
ataaccctaaggttgcaggagtggcacctataccctggtggtaaccaact
gctctctaatgtatttcctccacaagaaaaaaatgatgcctagtactcta
agcctagccaactatacagggatagcaaagtcatggatctcatagaaaac
ctacaaatgctagtgtactaatacagaacaattcctaaccacaccctaat
atttgatattatactcacagataagtataggtctcaaccctcctcaaaaa
gtctctttgcaagagatgataatcagtatagaaaccacaccatcaaatta
atagatcaaaagattgtgtggagccagtcctaactggtacattgacatac
acactaccctaagctcaggatcactgcagagacagactgaaagatgtagc
agaa
gaattcagagctcttgggcaagagccaaagcatattaactattcactgct
acattgtgttatttggccaaggtcatcaaggaaattgggactatctggct
tctaatgaaagcaccataccttgtgaatttatttttaataaattctgaca
tcacagaaaatcatataagtgtttgtatatgtttctgacattgcaaggga
atgacaacatagttcagcatcattacaacatgtacaaacatatcattgtt
atgtatgaccactacttatttctggaattctttaattgtacaaaatttaa
atactgaaactgttactcacgtgaatggagggtttctgttgcaggttcct
ggttcctaccagggaatcatggtgagaggagattgaatatgcagctggtg
acattgtgttcccagtcaggaataagagataactgcttgtgcacagctca
cacacttctttcttattgtctaggatcccagcccttgcaatggtgccatc
cataagcaacacaagacacagacctactgacaggcaccctcagaagctaa
cctaatacaaataattatccacaggaatgtccagaatgaacctaatattg
atcatttcatacaagcatgttcaggtaattatctactacgtaattttgga
ttctgtgaaaccaactgtcttagtcagggtttctattcctgcacaaacat
catgaccaagaagcagttggggaggaaagggtttattcagcttacacttc
catactgctattcatcaccaaggaagtcaggactggaactcaagcaggtc
atgaaacaggagctgatgcagagtccatggagggatggtctttacaggct
agctcccctgtcttgctcagcctgctctctatagaacccaggactaccag
cccagagatggcaccacccacaagggacctcccccttgatcactaattga
gaaatgctatagctggactctgagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89267316_89267888
seq2: B6Ng01-021K06.b_44_616 (reverse)

seq1  CATAAACATGTTATGTTATCTAATTAGGACTCTTAGTTGCTTCCCTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACATGTTATGTTATCTAATTAGGACTCTTAGTTGCTTCCCTCCTT  50

seq1  TGGAAGCCAGAACGATGCCATCTACTACCATGAACTATAGTCCTCAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCAGAACGATGCCATCTACTACCATGAACTATAGTCCTCAGAGA  100

seq1  GAAGACTTTCAGGTCAGTTCCAACACAGAGTGTCTAGGTCCTGTGTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTTCAGGTCAGTTCCAACACAGAGTGTCTAGGTCCTGTGTCCAA  150

seq1  AGTTTATATTTTGTTTTATCCCCTCTGTTCTCAGTATTTGGGGAGGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATATTTTGTTTTATCCCCTCTGTTCTCAGTATTTGGGGAGGTTTT  200

seq1  GATCATGTGTTTTATACTTGGAATGATCTGAAATGGCTCCAGGAGAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGTGTTTTATACTTGGAATGATCTGAAATGGCTCCAGGAGAAACT  250

seq1  TAGGGCAGATGAATCATACAAAAAAATGAGCCAGAAATCTCCTCCATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAGATGAATCATACAAAAAAATGAGCCAGAAATCTCCTCCATCTT  300

seq1  TCAGCTGAAATACATGTTACAGTCTGCAGTGAGCTTGGAGTACTATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGAAATACATGTTACAGTCTGCAGTGAGCTTGGAGTACTATTTTT  350

seq1  ATGTGTGTGACTAAGGCCAAATGGCAGCTAAAGGTATGAGCCAGTTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGACTAAGGCCAAATGGCAGCTAAAGGTATGAGCCAGTTCAGC  400

seq1  ATATAATATGAACATTTCTTAAGATCTTTTGAATTGTGTGGATTTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATATGAACATTTCTTAAGATCTTTTGAATTGTGTGGATTTGTGTT  450

seq1  GCCTTTGAGGTGTGAAAGTGAAAGATGCTGTGGTCCTAAACAATGCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGAGGTGTGAAAGTGAAAGATGCTGTGGTCCTAAACAATGCCAGT  500

seq1  CCACAGCATTGCTTATGTCCATGTAAAAATTACTTTTGTGTTTGAGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCATTGCTTATGTCCATGTAAAAATTACTTTTGTGTTTGAGTTGC  550

seq1  AAGATTTTTCTGCTTAGGAATTC  573
      |||||||||||||||||||||||
seq2  AAGATTTTTCTGCTTAGGAATTC  573

seq1: chr18_89133276_89134111
seq2: B6Ng01-021K06.g_66_901

seq1  GAATTCAGAGCTCTTGGGCAAGAGCCAAAGCATATTAACTATTCACTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCTCTTGGGCAAGAGCCAAAGCATATTAACTATTCACTGCT  50

seq1  ACATTGTGTTATTTGGCCAAGGTCATCAAGGAAATTGGGACTATCTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGTTATTTGGCCAAGGTCATCAAGGAAATTGGGACTATCTGGCT  100

seq1  TCTAATGAAAGCACCATACCTTGTGAATTTATTTTTAATAAATTCTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGAAAGCACCATACCTTGTGAATTTATTTTTAATAAATTCTGACA  150

seq1  TCACAGAAAATCATATAAGTGTTTGTATATGTTTCTGACATTGCAAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAAAATCATATAAGTGTTTGTATATGTTTCTGACATTGCAAGGGA  200

seq1  ATGACAACATAGTTCAGCATCATTACAACATGTACAAACATATCATTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAACATAGTTCAGCATCATTACAACATGTACAAACATATCATTGTT  250

seq1  ATGTATGACCACTACTTATTTCTGGAATTCTTTAATTGTACAAAATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGACCACTACTTATTTCTGGAATTCTTTAATTGTACAAAATTTAA  300

seq1  ATACTGAAACTGTTACTCACGTGAATGGAGGGTTTCTGTTGCAGGTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAAACTGTTACTCACGTGAATGGAGGGTTTCTGTTGCAGGTTCCT  350

seq1  GGTTCCTACCAGGGAATCATGGTGAGAGGAGATTGAATATGCAGCTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTACCAGGGAATCATGGTGAGAGGAGATTGAATATGCAGCTGGTG  400

seq1  ACATTGTGTTCCCAGTCAGGAATAAGAGATAACTGCTTGTGCACAGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGTTCCCAGTCAGGAATAAGAGATAACTGCTTGTGCACAGCTCA  450

seq1  CACACTTCTTTCTTATTGTCTAGGATCCCAGCCCTTGCAATGGTGCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCTTTCTTATTGTCTAGGATCCCAGCCCTTGCAATGGTGCCATC  500

seq1  CATAAGCAACACAAGACACAGACCTACTGACAGGCACCCTCAGAAGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCAACACAAGACACAGACCTACTGACAGGCACCCTCAGAAGCTAA  550

seq1  CCTAATACAAATAATTATCCACAGGAATGTCCAGAATGAACCTAATATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATACAAATAATTATCCACAGGAATGTCCAGAATGAACCTAATATTG  600

seq1  ATCATTTCATACAAGCATGTTCAGGTAATTATCTACTACGTAATTTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCATACAAGCATGTTCAGGTAATTATCTACTACGTAATTTTGGA  650

seq1  TTCTGTGAAACCAACTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAAACCAACTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACAT  700

seq1  CATGACCAAGAAGCAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCAAGAAGCAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTC  750

seq1  CATACTGCTATTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGCTATTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTC  800

seq1  ATGAAACAGGAGCTGATGCAGAGTCCATGGAGGGAT  836
      ||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAGGAGCTGATGCAGAGTCCATGGAGGGAT  836