BAC Information

Click to search

BAC

Clone NameB6Ng01-021L02
Chromosome18 (Build37)
Map Location 21,259,971 - 21,404,398
singlet/doubletdoublet
Overlap geneGm944
Upstream geneDsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978
Downstream geneLOC665722, LOC225264, Klhl14, 4921528I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021L02.bB6Ng01-021L02.g
ACCDH854125DH854126
length646980
definitionDH854125|Mus musculus domesticus DNA, BAC clone: B6Ng01-021L02, 5' end.DH854126|Mus musculus domesticus DNA, BAC clone: B6Ng01-021L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,259,971 - 21,260,616)(21,403,791 - 21,404,398)
sequence
gaattctggcaacctctgactgtgatatctgcctatgcttgtacaattgt
gggaccattcatttctttcagttttgactcacaagaggatatttgacaga
ggttagttctcaatactagttgtggtttaaattatgaaatgtctctctct
tagtgtgactattgctgtgatgacacaccacaaccagaagcaaggtgagg
aggaaagggtttatttggcttgtgcttccacattactttccattattgaa
ggaagttggaacaagaacttaaacagggcaggaacctggaggctggagct
gatgcagagaccatggtggggtgctgcttactagcttgctccttatggct
tgctcagcctgctttctgatagaaccctggaataccagcctagggtggtc
cctcccacagtgggttgggccctccaatggcaatcactaattaagaaact
ggccctacagactttcctacagcctgatcttagggagatgttttctcagt
tgaggttccctcctctccaatgactctagcttatgccaagctgacataaa
agtagccagcacatccttccctaggttcatgtatttaaacacttggtccc
cagctggtgggactggtttggaaggtatgcaaactttaggagatgg
gaattctttcacatttgcaggaaacagggatctcccaagcttttcgtcaa
actagaatttttgcactgcaggttcattgccaaaatgagatgcccaggag
gaactgagcagaatcatgggtgcttattaaatgcagtgtgggtatggagt
ggccttatccctggttgtgatgtcattatgcagcactgtaaattattaca
atcctgtagaaaaggtatcatctctgtatttttcatgatgtttttttggc
ccaggtttcttctgtttgccccaaccctggcctcaaattctagtactgag
ttctccttggagcctgagatggatgctactgggggagtgatcaaattcca
cctctcagaaagaataaagaaaaaagaggatgatagcctctccagagagt
catggtggccacttagtgttccactggagattctagctaggggtactgaa
gaaaaattagggtccaaattggaatggggaagtaaaactacttctgttta
cagataacccgtgtttatcaataggaaatcctaaagaatgtgtaattttt
accaattatagtagaaccgagaagttcagcaacattgctgaatattaaga
gcagcatacagaaaattactgtgcatctgtatgttagcagtgggcactgc
aaaataatgtttcttgcagtgctatcagaaaaaagtgattacaatctcac
atatttagcaaaagcattgtacgtcttctattactggaaagtgtatatta
ttaaattagatcaaagcaatagaaaggcatcacttgttcatgaattgtaa
agattaatagttctaaaaatagtaatctcccagatcactctgtggattaa
atagttaccagaatcactgcttttctttcctgctgaaactgacagtcttt
aaaggagcctagaaaaaactcaccaatccttgagaaggagttaagttgtc
aaacccacttcctattttaaacttaccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_21259971_21260616
seq2: B6Ng01-021L02.b_45_690

seq1  GAATTCTGGCAACCTCTGACTGTGATATCTGCCTATGCTTGTACAATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCAACCTCTGACTGTGATATCTGCCTATGCTTGTACAATTGT  50

seq1  GGGACCATTCATTTCTTTCAGTTTTGACTCACAAGAGGATATTTGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCATTCATTTCTTTCAGTTTTGACTCACAAGAGGATATTTGACAGA  100

seq1  GGTTAGTTCTCAATACTAGTTGTGGTTTAAATTATGAAATGTCTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTTCTCAATACTAGTTGTGGTTTAAATTATGAAATGTCTCTCTCT  150

seq1  TAGTGTGACTATTGCTGTGATGACACACCACAACCAGAAGCAAGGTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGACTATTGCTGTGATGACACACCACAACCAGAAGCAAGGTGAGG  200

seq1  AGGAAAGGGTTTATTTGGCTTGTGCTTCCACATTACTTTCCATTATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGTTTATTTGGCTTGTGCTTCCACATTACTTTCCATTATTGAA  250

seq1  GGAAGTTGGAACAAGAACTTAAACAGGGCAGGAACCTGGAGGCTGGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTGGAACAAGAACTTAAACAGGGCAGGAACCTGGAGGCTGGAGCT  300

seq1  GATGCAGAGACCATGGTGGGGTGCTGCTTACTAGCTTGCTCCTTATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAGACCATGGTGGGGTGCTGCTTACTAGCTTGCTCCTTATGGCT  350

seq1  TGCTCAGCCTGCTTTCTGATAGAACCCTGGAATACCAGCCTAGGGTGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCCTGCTTTCTGATAGAACCCTGGAATACCAGCCTAGGGTGGTC  400

seq1  CCTCCCACAGTGGGTTGGGCCCTCCAATGGCAATCACTAATTAAGAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACAGTGGGTTGGGCCCTCCAATGGCAATCACTAATTAAGAAACT  450

seq1  GGCCCTACAGACTTTCCTACAGCCTGATCTTAGGGAGATGTTTTCTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTACAGACTTTCCTACAGCCTGATCTTAGGGAGATGTTTTCTCAGT  500

seq1  TGAGGTTCCCTCCTCTCCAATGACTCTAGCTTATGCCAAGCTGACATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTCCCTCCTCTCCAATGACTCTAGCTTATGCCAAGCTGACATAAA  550

seq1  AGTAGCCAGCACATCCTTCCCTAGGTTCATGTATTTAAACACTTGGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCAGCACATCCTTCCCTAGGTTCATGTATTTAAACACTTGGTCCC  600

seq1  CAGCTGGTGGGACTGGTTTGGAAGGTATGCAAACTTTAGGAGATGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTGGGACTGGTTTGGAAGGTATGCAAACTTTAGGAGATGG  646

seq1: chr18_21403791_21404398
seq2: B6Ng01-021L02.g_66_673 (reverse)

seq1  TATGCTGCTCTTAATATTCAGCAATGTTGCTGAACTTCTCGGTTCTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGCTCTTAATATTCAGCAATGTTGCTGAACTTCTCGGTTCTACTA  50

seq1  TAATTGGTAAAAATTACACATTCTTTAGGATTTCCTATTGATAAACACGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGTAAAAATTACACATTCTTTAGGATTTCCTATTGATAAACACGG  100

seq1  GTTATCTGTAAACAGAAGTAGTTTTACTTCCCCATTCCAATTTGGACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTGTAAACAGAAGTAGTTTTACTTCCCCATTCCAATTTGGACCCT  150

seq1  AATTTTTCTTCAGTACCCCTAGCTAGAATCTCCAGTGGAACACTAAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTTCAGTACCCCTAGCTAGAATCTCCAGTGGAACACTAAGTGG  200

seq1  CCACCATGACTCTCTGGAGAGGCTATCATCCTCTTTTTTCTTTATTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGACTCTCTGGAGAGGCTATCATCCTCTTTTTTCTTTATTCTTT  250

seq1  CTGAGAGGTGGAATTTGATCACTCCCCCAGTAGCATCCATCTCAGGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGTGGAATTTGATCACTCCCCCAGTAGCATCCATCTCAGGCTCC  300

seq1  AAGGAGAACTCAGTACTAGAATTTGAGGCCAGGGTTGGGGCAAACAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAACTCAGTACTAGAATTTGAGGCCAGGGTTGGGGCAAACAGAAG  350

seq1  AAACCTGGGCCAAAAAAACATCATGAAAAATACAGAGATGATACCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGGCCAAAAAAACATCATGAAAAATACAGAGATGATACCTTTTC  400

seq1  TACAGGATTGTAATAATTTACAGTGCTGCATAATGACATCACAACCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGATTGTAATAATTTACAGTGCTGCATAATGACATCACAACCAGGG  450

seq1  ATAAGGCCACTCCATACCCACACTGCATTTAATAAGCACCCATGATTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCCACTCCATACCCACACTGCATTTAATAAGCACCCATGATTCTG  500

seq1  CTCAGTTCCTCCTGGGCATCTCATTTTGGCAATGAACCTGCAGTGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTCCTCCTGGGCATCTCATTTTGGCAATGAACCTGCAGTGCAAAA  550

seq1  ATTCTAGTTTGACGAAAAGCTTGGGAGATCCCTGTTTCCTGCAAATGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTTTGACGAAAAGCTTGGGAGATCCCTGTTTCCTGCAAATGTGA  600

seq1  AAGAATTC  608
      ||||||||
seq2  AAGAATTC  608