BAC Information

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BAC

Clone NameB6Ng01-021M05
Chromosome11 (Build37)18 (Build37)
Map Location 109,052,274 - 109,053,30118,506,736 - 18,506,988
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrkca, Apoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985
Downstream geneRgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a, Abca9, Abca6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021M05.bB6Ng01-021M05.g
ACCDH854177DH854178
length1,052687
definitionDH854177|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M05, 5' end.DH854178|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,052,274 - 109,053,301)(18,506,736 - 18,506,988)
sequence
gaattcactgtgtaatatttaccttataaccattcataactgtataatct
cacagcactaactacatatacacatagtcactgccatcatccacccacag
aattttcctcaccctgcctaaaaaaagaaaaaaaaaaaccctctgtgttg
attaaacacctgattcccattaccccatcctaaaactaccactctacttt
ctgtctgtaagaatctgactacatgtgcctcatgtgcttggagtcagacc
accgtctgtctattttgtggccgccttatttcattcagtagaacaccctc
aaaattttgtccatgttgcagcctgtggcaggatttcttcctgttcaaga
gtgagtagtattccactgtgtgcctatatcagatttcattagtctttcaa
ctctttattttttagagtcagagtcctactatgttgctagctcaggctgg
cctactatgttgctagcccaagctgatctcaaattcacagcaatccccca
acctacgctccccaaagagctcggattataggaatgagtcaccatgcctg
gcttaccttctttaggtgaaatatattgttgcttactcaatgaaatggat
tattaacattataatctagggttggagccagctatccaacctttaaggac
caaacagtaaatactttaggtttcatagacttctttacagcacctgtgca
atcaaatgcctgggcaacagtgatgtggcgccacggttaccacatttgta
aatgaatgggtagggctatctaccaataaaaatttatttaccaaaaaaaa
aaaatgctgggcgtggtggtgcatgctttaatcccagcactcaggaggca
gaggcaggtgatttctgggttcgaggccagcctgtcttacagagtgagtt
caggatagcagggctacacagagacttctgtctcgaaatcaaatcaaacc
aaacccaaacaaaacaaaaagcagtgagctggagtcagctcaaggttagt
gtctacgatttggaggaaaaaaatagatataaaacagctttatgtgggga
ca
gaattctaaaacgtccttaatttatttctttatttcttcctggactcagt
ggtcattcagtaaagacttgttcagtttccatgagtttgtatgctttctg
ttgttgttgaattccttctttaatccttggtggtctgataagatacaagg
tgttatttcaattttgttgtatctgttgaggcttgcttttcaaccaactt
aagtggtcaattttggagaaggttttggaaggtgctgagaaaaaggtata
ttctttttgtgttcgggggcggggatgttctacagatacctgttatgtcc
atttgatatattattttttttaattaggtattttcctcgtttacattttc
aatgctatcccaaaggtcccccatacccacccccccaatcccctacccac
ccactgcccctttttggccctggcgttcccctgtactggggcatataaag
tttgcaagtccaatgggcctctctttgcagtgatgaccgactaggccatc
ttttgatacatatgcagctaaagacaagagctcccgggtactggttagtt
catattgttgtgtccatttgttttataaactttgttaattttcacgattt
ctatgtctagtttctgccttgatgactgtctgttgatgagattagggtgt
tgaagtttccccactgttaacgtatgggggtttgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_109052274_109053301
seq2: B6Ng01-021M05.b_99_1097 (reverse)

seq1  TGTCCCCCAACACTAAAGCTGGTGTTTTATATTCTATTTTTATCTCCTTC  50
      |||||||  ||| ||||||   ||||||||| ||||||||  | |||| |
seq2  TGTCCCC--ACA-TAAAGC---TGTTTTATA-TCTATTTT--TTTCCTCC  41

seq1  ACAGAATCTGTAGATCACTAACCTTGGGCTGACTCCAGCTCACTGGCTTT  100
      |   |||| ||||| ||||||||||| ||||||||||||||||| |||||
seq2  A---AATC-GTAGA-CACTAACCTTGAGCTGACTCCAGCTCACT-GCTTT  85

seq1  TTTGGTTTTTGTTTGGGGTTTTGGTTTTGGTTTTGGTTTTTCGAGACAGG  150
      ||    |||||||||||  ||||||||  | ||||   |||||||||| |
seq2  TT---GTTTTGTTTGGG--TTTGGTTT--GATTTG--ATTTCGAGACA-G  125

seq1  ATGTCTCTGTGTAGCCCTGGCTATCCTGGAACTCACTCTGTAGACCAGGC  200
      | |||||||||||||||| |||||||| ||||||||||||||   |||||
seq2  AAGTCTCTGTGTAGCCCT-GCTATCCT-GAACTCACTCTGTAAGACAGGC  173

seq1  TGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGAT  250
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  TGGCCTCGAACCCAGAAAT-CACCTGCCTCTGCCTCCTGAGTGCTGGGAT  222

seq1  TAAAAGCATGCACCACCACGCCCAGCATTTTTTTTTTTTGGTAAATAAAT  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAAGCATGCACCACCACGCCCAGCATTTTTTTTTTTTGGTAAATAAAT  271

seq1  TTTTATTGGTAGATAGCCCTACCCATTCATTTACAAATGTGGTAACCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGGTAGATAGCCCTACCCATTCATTTACAAATGTGGTAACCGTG  321

seq1  GCGCCACATCACTGTTGCCCAGGCATTTGATTGCACAGGTGCTGTAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCACATCACTGTTGCCCAGGCATTTGATTGCACAGGTGCTGTAAAGA  371

seq1  AGTCTATGAAACCTAAAGTATTTACTGTTTGGTCCTTAAAGGTTGGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGAAACCTAAAGTATTTACTGTTTGGTCCTTAAAGGTTGGATAG  421

seq1  CTGGCTCCAACCCTAGATTATAATGTTAATAATCCATTTCATTGAGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCAACCCTAGATTATAATGTTAATAATCCATTTCATTGAGTAAG  471

seq1  CAACAATATATTTCACCTAAAGAAGGTAAGCCAGGCATGGTGACTCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATATATTTCACCTAAAGAAGGTAAGCCAGGCATGGTGACTCATTC  521

seq1  CTATAATCCGAGCTCTTTGGGGAGCGTAGGTTGGGGGATTGCTGTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATCCGAGCTCTTTGGGGAGCGTAGGTTGGGGGATTGCTGTGAATT  571

seq1  TGAGATCAGCTTGGGCTAGCAACATAGTAGGCCAGCCTGAGCTAGCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCAGCTTGGGCTAGCAACATAGTAGGCCAGCCTGAGCTAGCAACA  621

seq1  TAGTAGGACTCTGACTCTAAAAAATAAAGAGTTGAAAGACTAATGAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGACTCTGACTCTAAAAAATAAAGAGTTGAAAGACTAATGAAATC  671

seq1  TGATATAGGCACACAGTGGAATACTACTCACTCTTGAACAGGAAGAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGGCACACAGTGGAATACTACTCACTCTTGAACAGGAAGAAATC  721

seq1  CTGCCACAGGCTGCAACATGGACAAAATTTTGAGGGTGTTCTACTGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACAGGCTGCAACATGGACAAAATTTTGAGGGTGTTCTACTGAATG  771

seq1  AAATAAGGCGGCCACAAAATAGACAGACGGTGGTCTGACTCCAAGCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGCGGCCACAAAATAGACAGACGGTGGTCTGACTCCAAGCACAT  821

seq1  GAGGCACATGTAGTCAGATTCTTACAGACAGAAAGTAGAGTGGTAGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACATGTAGTCAGATTCTTACAGACAGAAAGTAGAGTGGTAGTTTT  871

seq1  AGGATGGGGTAATGGGAATCAGGTGTTTAATCAACACAGAGGGTTTTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGGTAATGGGAATCAGGTGTTTAATCAACACAGAGGGTTTTTTT  921

seq1  TTTTCTTTTTTTAGGCAGGGTGAGGAAAATTCTGTGGGTGGATGATGGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTTAGGCAGGGTGAGGAAAATTCTGTGGGTGGATGATGGCA  971

seq1  GTGACTATGTGTATATGTAGTTAGTGCT  1028
      ||||||||||||||||||||||||||||
seq2  GTGACTATGTGTATATGTAGTTAGTGCT  999

seq1: chr18_18506736_18506988
seq2: B6Ng01-021M05.g_380_628 (reverse)

seq1  ACAACAATATGAACTAACCAGTACCCAGGAGCTCTTGTCTTTAGCTGCAT  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACAACAATATGAACTAACCAGTACCCGGGAGCTCTTGTCTTTAGCTGCAT  50

seq1  ATGTATCAAAAGATGGCCTAGTCGGTCATCACTGCAAAGAGAGGCCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGTCATCACTGCAAAGAGAGGCCCATT  100

seq1  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  150

seq1  AGGGGGAGTGTGTGGGTAGGGGATTGGGGGGGGGGGTGGGTATGGGGGAC  200
      ||||| |||| ||||||||||||||    |||||||||||||||||||||
seq2  AGGGGCAGTGGGTGGGTAGGGGATT----GGGGGGGTGGGTATGGGGGAC  196

seq1  CTTTGGGATAGCATTGAAAATGTAAATGAGGAAAATACCTAATAAAAAAA  250
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  CTTTGGGATAGCATTGAAAATGTAAACGAGGAAAATACCTAATTAAAAAA  246

seq1  AAT  253
      |||
seq2  AAT  249