BAC Information

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BAC

Clone NameB6Ng01-021N04
Chromosome18 (Build37)
Map Location 61,144,527 - 61,304,676
singlet/doubletdoublet
Overlap geneCamk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi
Downstream geneSlc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021N04.bB6Ng01-021N04.g
ACCDH854223DH854224
length855806
definitionDH854223|Mus musculus domesticus DNA, BAC clone: B6Ng01-021N04, 5' end.DH854224|Mus musculus domesticus DNA, BAC clone: B6Ng01-021N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,304,161 - 61,304,676)(61,144,527 - 61,145,331)
sequence
gaattcctttgttgtattttccgtgagtcctggcagatgtactgaatcct
gaggcagtcgagcctcttgttacattgaactcacctcgtttgggagctgt
taactcattcttgtggtgcccttcactcgagagcaaatataatatataat
gtaaatatagcagcagtttgtgtcccctgaccctggttcctgtgttttag
tgtgcgtcagcaagagccttgttatcagtgactaatgaattcccctcccc
gtggatgtgcctgctagtctgtcctacctgctgaatggtgtttgattgct
accacgttttggcaattacaaatttgctataagcacttgtttacagattg
tgtgtgagcatgtatgttcatttcttctaaggaagtacatgatggtccaa
atggtatgtttagtattataggtgactgccaaaccattttccagagtgac
ttttccttccatcactgtgcgatcgttttggtttgagctgtatgccagca
cacagtggtgtttttagccctcccaattatgtgtgcagcggtattacatt
atactaccgcagtgaccagtggtggatgtgtagtttttgaagttttgttt
tgattttactctttctctgtgtatttgtgccatggtgcacatgtggagat
cagaggagacaaccttggtgttggttttctttctaccttgttagagacag
agttttctttttggctgctgcctgggacagagtgggttgcccagaattat
gttgactttgcctcccatgttcctgtgggagagctgaggcagagctgata
gacggccatgccccctttacctgggttctggggatgcagacttaaggccc
tcagg
gaattctccctgtcagatcaccctaccattgccacctatgtactcgcgtc
acgaaaacctgcttgttcacagaagtcgccacgacatcacagtgaacagc
cagctctccccagctccgttgcccaagctcttcctgccagtggggacctt
cttccggcttaagtacccagggtgctggccccaggaacccccacccccta
cccactgttgttggcctagcctagctttagctatagatggggcctcagct
gtgcaattggcaggaagtgaggaagaggcaggcaagctgtgttgagggca
cctctcatcgattccttctttcctggggttccccggggaagctcacacga
ggccctcagtctccaagccaaccccttatgagggagagtgagagaggagc
caacgccagtgagccaggaactgctgctctcatctgctctcctctgtgtt
ggccttgcctttgaccagaccatccgctacgaggggtgggctctaccgcc
caggtgccccactcactctgcctcagtcctcctgtgaagtttgcctccag
tgttgacccacccaccctgcccttcaacgtccttggagaattccagcttc
atctgtctgagaggagattggaaggtgtttcaggggcaaagcaagcaaca
tttaggtatcacttctacttggacgcatgcctttttacagccaaacttcc
gtgtattttcgtaaatggattttgcgttaacggacatctatgtgataact
agacctctcaagtttactgtaaagaagagtcggatgggttgggaagtggg
tgggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_61304161_61304676
seq2: B6Ng01-021N04.b_47_562 (reverse)

seq1  TAAAAACACCACTGTGTGCTGGCATACAGCTCAAACCAAAACGATCGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACACCACTGTGTGCTGGCATACAGCTCAAACCAAAACGATCGCAC  50

seq1  AGTGATGGAAGGAAAAGTCACTCTGGAAAATGGTTTGGCAGTCACCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGAAGGAAAAGTCACTCTGGAAAATGGTTTGGCAGTCACCTATA  100

seq1  ATACTAAACATACCATTTGGACCATCATGTACTTCCTTAGAAGAAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAACATACCATTTGGACCATCATGTACTTCCTTAGAAGAAATGAA  150

seq1  CATACATGCTCACACACAATCTGTAAACAAGTGCTTATAGCAAATTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGCTCACACACAATCTGTAAACAAGTGCTTATAGCAAATTTGTA  200

seq1  ATTGCCAAAACGTGGTAGCAATCAAACACCATTCAGCAGGTAGGACAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAAAACGTGGTAGCAATCAAACACCATTCAGCAGGTAGGACAGAC  250

seq1  TAGCAGGCACATCCACGGGGAGGGGAATTCATTAGTCACTGATAACAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCACATCCACGGGGAGGGGAATTCATTAGTCACTGATAACAAGG  300

seq1  CTCTTGCTGACGCACACTAAAACACAGGAACCAGGGTCAGGGGACACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTGACGCACACTAAAACACAGGAACCAGGGTCAGGGGACACAAA  350

seq1  CTGCTGCTATATTTACATTATATATTATATTTGCTCTCGAGTGAAGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTATATTTACATTATATATTATATTTGCTCTCGAGTGAAGGGCA  400

seq1  CCACAAGAATGAGTTAACAGCTCCCAAACGAGGTGAGTTCAATGTAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGAATGAGTTAACAGCTCCCAAACGAGGTGAGTTCAATGTAACAA  450

seq1  GAGGCTCGACTGCCTCAGGATTCAGTACATCTGCCAGGACTCACGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCGACTGCCTCAGGATTCAGTACATCTGCCAGGACTCACGGAAAA  500

seq1  TACAACAAAGGAATTC  516
      ||||||||||||||||
seq2  TACAACAAAGGAATTC  516

seq1: chr18_61144527_61145331
seq2: B6Ng01-021N04.g_68_873

seq1  GAATTCTCCCTGTCAGATCACCCTACCATTGCCACCTATGTACTCGCGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTGTCAGATCACCCTACCATTGCCACCTATGTACTCGCGTC  50

seq1  ACGAAAACCTGCTTGTTCACAGAAGTCGCCACGACATCACAGTGAACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAACCTGCTTGTTCACAGAAGTCGCCACGACATCACAGTGAACAGC  100

seq1  CAGCTCTCCCCAGCTCCGTTGCCCAAGCTCTTCCTGCCAGTGGGGACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCCCCAGCTCCGTTGCCCAAGCTCTTCCTGCCAGTGGGGACCTT  150

seq1  CTTCCGGCTTAAGTACCCAGGGTGCTGGCCCCAGGAACCCCCACCCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGGCTTAAGTACCCAGGGTGCTGGCCCCAGGAACCCCCACCCCCTA  200

seq1  CCCACTGTTGTTGGCCTAGCCTAGCTTTAGCTATAGATGGGGCCTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGTTGTTGGCCTAGCCTAGCTTTAGCTATAGATGGGGCCTCAGCT  250

seq1  GTGCAATTGGCAGGAAGTGAGGAAGAGGCAGGCAAGCTGTGTTGAGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATTGGCAGGAAGTGAGGAAGAGGCAGGCAAGCTGTGTTGAGGGCA  300

seq1  CCTCTCATCGATTCCTTCTTTCCTGGGGTTCCCCGGGGAAGCTCACACGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATCGATTCCTTCTTTCCTGGGGTTCCCCGGGGAAGCTCACACGA  350

seq1  GGCCCTCAGTCTCCAAGCCAACCCCTTATGAGGGAGAGTGAGAGAGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCAGTCTCCAAGCCAACCCCTTATGAGGGAGAGTGAGAGAGGAGC  400

seq1  CAACGCCAGTGAGCCAGGAACTGCTGCTCTCATCTGCTCTCCTCTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCCAGTGAGCCAGGAACTGCTGCTCTCATCTGCTCTCCTCTGTGTT  450

seq1  GGCCTTGCCTTTGACCAGACCATCCGCTACGAGGGGTGGGCTCTACCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGCCTTTGACCAGACCATCCGCTACGAGGGGTGGGCTCTACCGCC  500

seq1  CAGGTGCCCCACTCACTCTGCCTCAGTCCTCCTGTGAAGTTTGCCTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCCCACTCACTCTGCCTCAGTCCTCCTGTGAAGTTTGCCTCCAG  550

seq1  TGTTGACCCACCCACCCTGCCCTTCAACGTCCTTGGAGAATTCCAGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACCCACCCACCCTGCCCTTCAACGTCCTTGGAGAATTCCAGCTTC  600

seq1  ATCTGTCTGAGAGGAGATTGGAAGGTGTTTCAGGGGCAAAGCAAGCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTGAGAGGAGATTGGAAGGTGTTTCAGGGGCAAAGCAAGCAACA  650

seq1  TTTAGGTATCACTTCTACTTGGACGCATGCCTTTTTACAGCCAAACTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTATCACTTCTACTTGGACGCATGCCTTTTTACAGCCAAACTTCC  700

seq1  GTGTA-TTTCGTAAATGGATTTTGCGTTAACGGACATCTATGTGATAACT  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTTCGTAAATGGATTTTGCGTTAACGGACATCTATGTGATAACT  750

seq1  AGACCTCTCAAGTTTACTGTAAAGAAGAGTCGGATGGGTTGGGAAGTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTCAAGTTTACTGTAAAGAAGAGTCGGATGGGTTGGGAAGTGGG  800

seq1  TGGGAA  805
      ||||||
seq2  TGGGAA  806