BAC Information

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BAC

Clone NameB6Ng01-022K21
Chromosome18 (Build37)
Map Location 37,209,771 - 37,210,688
singlet/doubletsinglet
Overlap genePcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12
Upstream geneLOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427
Downstream genePcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022K21.bB6Ng01-022K21.g
ACCDH854820DH854821
length9161,028
definitionDH854820|Mus musculus domesticus DNA, BAC clone: B6Ng01-022K21, 5' end.DH854821|Mus musculus domesticus DNA, BAC clone: B6Ng01-022K21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtctcaaaaaagtggtaaacattagactagcttggtaggtaag
gtaggtaaggcagagttgcacttttgttggtagcatgagtttgatcctca
aaaccaacatagagaatgaaagaagaatgccaggtgtggtagtgtatact
tttaatctcagaacttgggaggcaaagtgaggcaaaggcaggcacatctg
tctgaggacagcttggtctacagagtaagttccaagaaagccagggctgt
tgtactgagagatgctgtcttaaaaagaaagagagagagagagagagaga
gagagagagagagagagagagagagagagagagaagagagaaagcacatc
tctgcctacctctttggaggcctgctccaatccagctgagagaccccatg
cctaccctcatgccaactgggatcacagcaagcccagcagcaatgagctc
tgtccagccctattggagcttcatcttccttccgttccaaacctccactt
gcaatcaaggatctgtacctgaaaccccagcccacagttctgcctgcatt
ttgggaggcctgtagtgatcctggacaaccagtcacagaggcttactact
cccagggactaacaggccagccaactccagagacaaccaattggttaaag
gcaagcacaataacataatcatcagaatccagtgcagtatgggcaccatc
agaactcagctctcctactacagcaagcactccatatccctaacacaact
gaagagttggcatgtgaccttaaatcccatctcttgaagatgaaagaggc
ctttataaatataaataatttccttatggaattacagtaaacacaatcaa
acaggtagaagactttaaaagaggaaactaaataactcccttaaagaaat
acaggaaaagacaacc
gaattctttgtttagatctgtaccccactttttttcattttttattagat
attttcttcatttacatttcaaatgctatcctgaaagtcccctatatcct
ccccctgccctgctcccctacccacccactcccacttcttggccctggcg
ttctcctgtactgggacatataaagtttgcaataccaaggggcctctctt
cccagtgatggccgactaggccatcttctgctacatatgcagctagagat
atgagctctgggggtactggttagttcatattgttgttccacctataggg
ttgcagacccctacagctccttgggtattttctctagctcctctcttggg
gaccctgtgttccatccaatagatgactatgagcatccacttctgtattt
gccaggcactggcatagcctcatcagagatagctatatcagggacctttc
agcaaaatcttgctggcatgtgcaataatgtctgtgtttggtggctgaat
atgagatggatccccaggtggagcaatctctggatggtccatccttccgt
gtcagctccaaactttgtctctgtaattccttccatgagtattttgttcc
ctattctaaggaggaatgaagtatccacgctttggtcttccttctccttg
attttcttgtgttttgcaaattgtatcttggatattctaagtttctgggc
taatatccattgtaataaagacaatgaatttcatgaaattcttaggaaaa
aggattcgtctggaggatatcatcctgagtgaggtaacccaatcacaaaa
gaactcacttgatatgcactcattgataagtgtaccccacttttaactga
gttttttcttttcttgatatctagtcttttgggttcttcatatatcttgg
atattacccccctatgggaaataatagtagatagaactcatcccatctgg
tagccggctgctcacctaaataaggtggtcctttgcatgcaaaagtttac
agctctatgatgtccactttaataatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37209771_37210688
seq2: B6Ng01-022K21.b_48_963

seq1  GAATTCTGTCTCAAAAAAGTGGTAAACATTAGACTAGCTTGGTAGGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCAAAAAAGTGGTAAACATTAGACTAGCTTGGTAGGTAAG  50

seq1  GTAGGTAAGGCAGAGTTGCACTTTTGTTGGTAGCATGAGTTTGATCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAAGGCAGAGTTGCACTTTTGTTGGTAGCATGAGTTTGATCCTCA  100

seq1  AAACCAACATAGAGAATGAAAGAAGAATGCCAGGTGTGGTAGTGTATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACATAGAGAATGAAAGAAGAATGCCAGGTGTGGTAGTGTATACT  150

seq1  TTTAATCTCAGAACTTGGGAGGCAAAGTGAGGCAAAGGCAGGCACATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTCAGAACTTGGGAGGCAAAGTGAGGCAAAGGCAGGCACATCTG  200

seq1  TCTGAGGACAGCTTGGTCTACAGAGTAAGTTCCAAGAAAGCCAGGGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACAGCTTGGTCTACAGAGTAAGTTCCAAGAAAGCCAGGGCTGT  250

seq1  TGTACTGAGAGATGCTGTCTTAAAAAGAAAGAGAGAGAGAGAGAGAGAGA  300
      |||||||||||||||||||||||||||||      |||||||||||||||
seq2  TGTACTGAGAGATGCTGTCTTAAAAAGAA------AGAGAGAGAGAGAGA  294

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAAAG  344

seq1  CACATCTCTGCCTACCTCTTTGGAGGCCTGCTCCAATCCAGCTGAGAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCTGCCTACCTCTTTGGAGGCCTGCTCCAATCCAGCTGAGAGAC  394

seq1  CCCATGCCTACCCTCATGCCAACTGGGATCACAGCAAGCCCAGCAGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCCTACCCTCATGCCAACTGGGATCACAGCAAGCCCAGCAGCAAT  444

seq1  GAGCTCTGTCCAGCCCTATTGGAGCTTCATCTTCCTTCCGTTCCAAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTGTCCAGCCCTATTGGAGCTTCATCTTCCTTCCGTTCCAAACCT  494

seq1  CCACTTGCAATCAAGGATCTGTACCTGAAACCCCAGCCCACAGTTCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGCAATCAAGGATCTGTACCTGAAACCCCAGCCCACAGTTCTGCC  544

seq1  TGCATTTTGGGAGGCCTGTAGTGATCCTGGACAACCAGTCACAGAGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTGGGAGGCCTGTAGTGATCCTGGACAACCAGTCACAGAGGCTT  594

seq1  ACTACTCCCAGGGACTAACAGGCCAGCCAACTCCAGAGACAACCAATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCCCAGGGACTAACAGGCCAGCCAACTCCAGAGACAACCAATTGG  644

seq1  TTAAAGGCAAGCACAATAACATAATCATCAGAATCCAGTGCAGTAT-GGC  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAAAGGCAAGCACAATAACATAATCATCAGAATCCAGTGCAGTATGGGC  694

seq1  ACCATCAGAACTCAGCTCTCCTACTACAGCAAGCACTCCATAT-CCTAAC  748
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCATCAGAACTCAGCTCTCCTACTACAGCAAGCACTCCATATCCCTAAC  744

seq1  ACAACTGAAGAGTAGGCATGTGACCTTAAATCCCATCTCATGAAGATGAA  798
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  ACAACTGAAGAGTTGGCATGTGACCTTAAATCCCATCTCTTGAAGATGAA  794

seq1  AGAGGCCTTTAAAAATATAAATAATTTCCTTATGGAATTACAGTAAACAC  848
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTTTATAAATATAAATAATTTCCTTATGGAATTACAGTAAACAC  844

seq1  AATCAAACAGGTAGAAGACCTT-AAAGAGGAAAC-AAATAACTCCCTTAA  896
      ||||||||||||||||||| || ||||||||||| |||||||||||||||
seq2  AATCAAACAGGTAGAAGACTTTAAAAGAGGAAACTAAATAACTCCCTTAA  894

seq1  AGAAATACAGGAAAAGACAACC  918
      ||||||||||||||||||||||
seq2  AGAAATACAGGAAAAGACAACC  916