BAC Information

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BAC

Clone NameB6Ng01-022N07
Chromosome18 (Build37)
Map Location 21,446,387 - 21,607,330
singlet/doubletdoublet
Overlap geneGm944, LOC665722
Upstream geneDsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978
Downstream geneLOC225264, Klhl14, 4921528I01Rik, LOC546708, LOC100040547, Asxl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022N07.bB6Ng01-022N07.g
ACCDH854926DH854927
length878826
definitionDH854926|Mus musculus domesticus DNA, BAC clone: B6Ng01-022N07, 5' end.DH854927|Mus musculus domesticus DNA, BAC clone: B6Ng01-022N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,606,453 - 21,607,330)(21,446,387 - 21,447,210)
sequence
gaattctctgcaaagaccattgagagcaagattattatattagtgtcctc
tctgtctcccacacacagccttgggacttccctctcaattacaactgtag
acacaggaggggcccattctcctgggctccagtcagcgttttgggcatat
aaatcgccttctttgtctatctcctagattatccagcagggataataatg
ggaaattttccataggttagtgtgcaagtgagatgtgtgcactgtgtatt
tagagcattcgtgccatgtccaacacaaggaaacatgtacataggatttg
tttccatccccatgacataggacacagtatcaagccttggatgggacagc
ttcccattagaacatgctctcaaattaccaggcacaaaaaataaaatggt
actatagaaaaatgaaagactgtgatttgtaaactaagtaaattttgcaa
gtaatgaaaaactgcatttgtgtttgttttgatgtgcaagcactacagac
aaaatatttcttaaccaaaaaaaacgagttttaaaaagaaggtctttctg
tggaaactcccaaccctgttagtttagatggccaaccctcacctccttac
ctatcactgtttctttctcttttcatggctatgtttttgaacctcaggga
cctagtcagttggacttctcttttttagaatatatggagatgatttttaa
aatgtgggctgtgcaggagacacagtttagtaaatttgtagatgaacaac
ccaataactttttttaaaatcagaaacaatgtggcttactgatgaataca
caaaatagattaaaagtatatgccccagtataggggaatgccagggccaa
aaaatgggaatgggtgggtagggaagtg
gaattccatacatgtctgggtaaatggggacagaggatgaatacagagca
aatatgaagaacacacattggattgtttaagtggatcacagtgtggtagt
ctgaataagaatgcccccatagatatatttgaatgcttattcaccaaaga
gtgacactatttgaatggattagaaggattgagagacatggccttgttgg
aggaagtgtgtcactgggcctttgaggttttaaaagcctaaaagcaagcg
tagagtctcttctctgcttcaggatgtagttctcagctacttctccaaca
ccacacctgcttgctgccatgctccctgctatgatcataatgaggtaaac
ctctgaaactgtaagcaagcccccaattaaatgctttcttttataagagt
tgccttgatcatggtgtctcttcacagcaacagaaccataaccaagacct
atgggcagacaaggtttcaagggcgggagtgcttgatgtaaaggatgagt
taaggtaggtagactctacatgacactggtacttactgcatacacgtcta
tcctccccactctctaggctccacgttcaactctacataagctattcaga
ttactgtcttccagttgaatcaaagaaaagacagagcttggggatggaag
ggagagcaaaagaagagacagagcaagggctcagatggagatacatcatt
caccatgtagtaaattggaggctcttcctctggcaataaaagatactctt
tcagcaactgccacttccacatgctgattaattaagctgctcacaaggcc
cttcattgttaagttgacagactgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_21606453_21607330
seq2: B6Ng01-022N07.b_44_921 (reverse)

seq1  CACTTCCCTACCCACCCATTCCCATTTTTTGGCCCTGGCATTCCCCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCCTACCCACCCATTCCCATTTTTTGGCCCTGGCATTCCCCTATA  50

seq1  CTGGGGCATATACTTTTAATCTATTTTGTGTATTCATCAGTAAGCCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCATATACTTTTAATCTATTTTGTGTATTCATCAGTAAGCCACAT  100

seq1  TGTTTCTGATTTTAAAAAAAGTTATTGGGTTGTTCATCTACAAATTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGATTTTAAAAAAAGTTATTGGGTTGTTCATCTACAAATTTACT  150

seq1  AAACTGTGTCTCCTGCACAGCCCACATTTTAAAAATCATCTCCATATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGTCTCCTGCACAGCCCACATTTTAAAAATCATCTCCATATATT  200

seq1  CTAAAAAAGAGAAGTCCAACTGACTAGGTCCCTGAGGTTCAAAAACATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAGAGAAGTCCAACTGACTAGGTCCCTGAGGTTCAAAAACATAG  250

seq1  CCATGAAAAGAGAAAGAAACAGTGATAGGTAAGGAGGTGAGGGTTGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAAAGAGAAAGAAACAGTGATAGGTAAGGAGGTGAGGGTTGGCCA  300

seq1  TCTAAACTAACAGGGTTGGGAGTTTCCACAGAAAGACCTTCTTTTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACTAACAGGGTTGGGAGTTTCCACAGAAAGACCTTCTTTTTAAAA  350

seq1  CTCGTTTTTTTTGGTTAAGAAATATTTTGTCTGTAGTGCTTGCACATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTTTTTTGGTTAAGAAATATTTTGTCTGTAGTGCTTGCACATCAA  400

seq1  AACAAACACAAATGCAGTTTTTCATTACTTGCAAAATTTACTTAGTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACACAAATGCAGTTTTTCATTACTTGCAAAATTTACTTAGTTTAC  450

seq1  AAATCACAGTCTTTCATTTTTCTATAGTACCATTTTATTTTTTGTGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAGTCTTTCATTTTTCTATAGTACCATTTTATTTTTTGTGCCTG  500

seq1  GTAATTTGAGAGCATGTTCTAATGGGAAGCTGTCCCATCCAAGGCTTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTGAGAGCATGTTCTAATGGGAAGCTGTCCCATCCAAGGCTTGAT  550

seq1  ACTGTGTCCTATGTCATGGGGATGGAAACAAATCCTATGTACATGTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCCTATGTCATGGGGATGGAAACAAATCCTATGTACATGTTTCC  600

seq1  TTGTGTTGGACATGGCACGAATGCTCTAAATACACAGTGCACACATCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGGACATGGCACGAATGCTCTAAATACACAGTGCACACATCTCA  650

seq1  CTTGCACACTAACCTATGGAAAATTTCCCATTATTATCCCTGCTGGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACACTAACCTATGGAAAATTTCCCATTATTATCCCTGCTGGATAA  700

seq1  TCTAGGAGATAGACAAAGAAGGCGATTTATATGCCCAAAACGCTGACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAGATAGACAAAGAAGGCGATTTATATGCCCAAAACGCTGACTGG  750

seq1  AGCCCAGGAGAATGGGCCCCTCCTGTGTCTACAGTTGTAATTGAGAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGAGAATGGGCCCCTCCTGTGTCTACAGTTGTAATTGAGAGGGA  800

seq1  AGTCCCAAGGCTGTGTGTGGGAGACAGAGAGGACACTAATATAATAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAAGGCTGTGTGTGGGAGACAGAGAGGACACTAATATAATAATCT  850

seq1  TGCTCTCAATGGTCTTTGCAGAGAATTC  878
      ||||||||||||||||||||||||||||
seq2  TGCTCTCAATGGTCTTTGCAGAGAATTC  878

seq1: chr18_21446387_21447210
seq2: B6Ng01-022N07.g_69_894

seq1  GAATTCCATACATGTCTGGGTAAATGGGGACAGAGGATGAATACAGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACATGTCTGGGTAAATGGGGACAGAGGATGAATACAGAGCA  50

seq1  AATATGAAGAACACACATTGGATTGTTTAAGTGGATCACAGTGTGGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGAACACACATTGGATTGTTTAAGTGGATCACAGTGTGGTAGT  100

seq1  CTGAATAAGAATGCCCCCATAGATATATTTGAATGCTTATTCACCAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAAGAATGCCCCCATAGATATATTTGAATGCTTATTCACCAAAGA  150

seq1  GTGACACTATTTGAATGGATTAGAAGGATTGAGAGACATGGCCTTGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACTATTTGAATGGATTAGAAGGATTGAGAGACATGGCCTTGTTGG  200

seq1  AGGAAGTGTGTCACTGGGCCTTTGAGGTTTTAAAAGCCTAAAAGCAAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGTGTCACTGGGCCTTTGAGGTTTTAAAAGCCTAAAAGCAAGCG  250

seq1  TAGAGTCTCTTCTCTGCTTCAGGATGTAGTTCTCAGCTACTTCTCCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTCTTCTCTGCTTCAGGATGTAGTTCTCAGCTACTTCTCCAACA  300

seq1  CCACACCTGCTTGCTGCCATGCTCCCTGCTATGATCATAATGAGGTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCTGCTTGCTGCCATGCTCCCTGCTATGATCATAATGAGGTAAAC  350

seq1  CTCTGAAACTGTAAGCAAGCCCCCAATTAAATGCTTTCTTTTATAAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAACTGTAAGCAAGCCCCCAATTAAATGCTTTCTTTTATAAGAGT  400

seq1  TGCCTTGATCATGGTGTCTCTTCACAGCAACAGAACCATAACCAAGACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGATCATGGTGTCTCTTCACAGCAACAGAACCATAACCAAGACCT  450

seq1  ATGGGCAGACAAGGTTTCAAGGGCGGGAGTGCTTGATGTAAAGGATGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAGACAAGGTTTCAAGGGCGGGAGTGCTTGATGTAAAGGATGAGT  500

seq1  TAAGGTAGGTAGACTCTACATGACACTGGTACTTACTGCATACACGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGGTAGACTCTACATGACACTGGTACTTACTGCATACACGTCTA  550

seq1  TCCTCCCCACTCTCTAGGCTCCACGTTCAACTCTACATAAGCTATTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCACTCTCTAGGCTCCACGTTCAACTCTACATAAGCTATTCAGA  600

seq1  TTACTGTCTTCCAGTTGAATCAAAGAAAAGACAGAGCTTGGGGATGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCTTCCAGTTGAATCAAAGAAAAGACAGAGCTTGGGGATGGAAG  650

seq1  GGAGAGCAAAAGAAGAGACAGAGCAA-GGCTCAGAT-GAGATACATCATT  698
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  GGAGAGCAAAAGAAGAGACAGAGCAAGGGCTCAGATGGAGATACATCATT  700

seq1  CACCATGTAGTAAATTGGAGGCTCTTCCTCTGGCAATAAAAGATACTCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTAGTAAATTGGAGGCTCTTCCTCTGGCAATAAAAGATACTCTT  750

seq1  TCAGCAACTGCCACCTCCACATGCTGATAGATAAAGCTGCTCACAAGGTC  798
      |||||||||||||| |||||||||||||  || ||||||||||||||| |
seq2  TCAGCAACTGCCACTTCCACATGCTGATTAATTAAGCTGCTCACAAGGCC  800

seq1  CTTCAGTGTTAAGTTGACAGACTGAG  824
      ||||| ||||||||||||||||||||
seq2  CTTCATTGTTAAGTTGACAGACTGAG  826