BAC Information

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BAC

Clone NameB6Ng01-023M06
Chromosome18 (Build37)
Map Location 21,533,702 - 21,534,676
singlet/doubletsinglet
Overlap genenone
Upstream geneDsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722
Downstream geneLOC225264, Klhl14, 4921528I01Rik, LOC546708, LOC100040547
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023M06.bB6Ng01-023M06.g
ACCDH855595DH855596
length9671,187
definitionDH855595|Mus musculus domesticus DNA, BAC clone: B6Ng01-023M06, 5' end.DH855596|Mus musculus domesticus DNA, BAC clone: B6Ng01-023M06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtgccctcaaatacttgtcatcgctcacagtgggacaaagga
acggagaacacacagagaccagtgccaatccatcacctctgctgcctggc
aattcaatgtcatgccctccagatgacgggtcaatggctcaggcctcacc
tgtgaaggatggcctatctgtcatccaggagcgctttcccctgccctgga
acatcatggatgagtaagcgcatcctaaaacgcagagggcaagtgcttta
actgccttcccacaatccacacggtctgttgcacaatgtctttatttata
tagccttagagccctcctccttttcctgtgaagttgaaagtttctctgga
gtaatagctatgaggggtgagagaacacactgagggacagtcccatgaac
acagttcaactttgtgtgacgtgatgtggagatgcattctctaagctaga
ttccagagaacacaagctttatccaggaagtgggtctctcttccccagtc
ccgttcccgtcctcttttcgctcctccctctcttcctgtctttctaatca
tgtatttttaaattttgttttgagagaaggtttccacgcagcttacactg
gtctgcccgccgtgtaggattccttgattgccctgctcttgcttctggat
tgctgaggttacagatgttcaccaccacatgtggtttatatggtgctggg
gatcagacctggggctttgtacatgctagcccttttcccttttttaaatt
acattttggaccttgtacacctaagaaaatttctccttttatattactta
gaaataggctcttaaaaatattacataccttatttgtgggtgagggtgtg
tgtgcatgccgtggtgcacattcgggggtctgagtcagcttgtaggaatc
tttctccccttcaccctattggctgcactattcagcttgatgggaagcaa
ctatactagctgaatga
gaattctcaccagaggaataccgaatggctgaaaaccacctgaaaaaatg
ttcagcatctttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccaccttacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatcctgcaatacctctcctgggc
atatatccagaagatgttccaaccagtaagaaggacacatgctccactat
gttcatagcagccttattataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatgcagaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggtatcatcctgagtaaggttacccaatcccaaa
ggaactcacacaatatgtactcactgataagtggacattagcccagaatc
ttaggatacccaagatataagatacaatttgctaaacacatgaaactcaa
gaagaatgaacaccaaagtgtggacacttttcccccttcttagaattggg
aacaaaacacccatggaaggagttacagagacaaagtttggagctgtgtc
aaaaggatggaccatctagagcctgccatatccagggttctatcccataa
tcagcttccaaacgctgacaccattgcatatactagcaagattttgctga
aagacacagatatggctgtctcttgtgagactatgcttggggcttagcaa
acacagaagtggatgctcacagtcagctattggatggatcacagggcctc
taatggaggagctagagaaagtacccaggagcttaagggattctgcaccc
tatagtagaacaacattatgacctaccagtactctcagagctctgactct
ggctgcttattatcaaaagatgggctaatcagccttctcgggaagaaaga
gtccatggatctgcaaactttaattgcctcagttcgggggaacaatcagg
cccaaaatgggagttggtgggtaagagatgatggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_21533702_21534676
seq2: B6Ng01-023M06.b_45_1011

seq1  GAATTCCAGTGCCCTCAAATACTTGTCATCGCTCACAGTGGGACAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCCCTCAAATACTTGTCATCGCTCACAGTGGGACAAAGGA  50

seq1  ACGGAGAACACACAGAGACCAGTGCCAATCCATCACCTCTGCTGCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGAACACACAGAGACCAGTGCCAATCCATCACCTCTGCTGCCTGGC  100

seq1  AATTCAATGTCATGCCCTCCAGATGACGGGTCAATGGCTCAGGCCTCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAATGTCATGCCCTCCAGATGACGGGTCAATGGCTCAGGCCTCACC  150

seq1  TGTGAAGGATGGCCTATCTGTCATCCAGGAGCGCTTTCCCCTGCCCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGATGGCCTATCTGTCATCCAGGAGCGCTTTCCCCTGCCCTGGA  200

seq1  ACATCATGGATGAGTAAGCGCATCCTAAAACGCAGAGGGCAAGTGCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATGGATGAGTAAGCGCATCCTAAAACGCAGAGGGCAAGTGCTTTA  250

seq1  ACTGCCTTCCCACAATCCACACGGTCTGTTGCACAATGTCTTTATTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTCCCACAATCCACACGGTCTGTTGCACAATGTCTTTATTTATA  300

seq1  TAGCCTTAGAGCCCTCCTCCTTTTCCTGTGAAGTTGAAAGTTTCTCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTAGAGCCCTCCTCCTTTTCCTGTGAAGTTGAAAGTTTCTCTGGA  350

seq1  GTAATAGCTATGAGGGGTGAGAGAACACACTGAGGGACAGTCCCATGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGCTATGAGGGGTGAGAGAACACACTGAGGGACAGTCCCATGAAC  400

seq1  ACAGTTCAACTTTGTGTGACGTGATGTGGAGATGCATTCTCTAAGCTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCAACTTTGTGTGACGTGATGTGGAGATGCATTCTCTAAGCTAGA  450

seq1  TTCCAGAGAACACAAGCTTTATCCAGGAAGTGGGTCTCTCTTCCCCAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGAACACAAGCTTTATCCAGGAAGTGGGTCTCTCTTCCCCAGTC  500

seq1  CCGTTCCCGTCCTCTTTTCGCTCCTCCCTCTCTTCCTGTCTTTCTAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCCCGTCCTCTTTTCGCTCCTCCCTCTCTTCCTGTCTTTCTAATCA  550

seq1  TGTATTTTTAAATTTTGTTTTGAGAGAAGGTTTCCACGCAGCTTACACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTAAATTTTGTTTTGAGAGAAGGTTTCCACGCAGCTTACACTG  600

seq1  GTCTGCCCGCCGTGTAGGATTCCTTGATTGCCCTGCTCTTGCTTCTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCCGCCGTGTAGGATTCCTTGATTGCCCTGCTCTTGCTTCTGGAT  650

seq1  TGCTGAGGTTACAGATGTTCACCACCACATGTGGTTTATATGGTGCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGTTACAGATGTTCACCACCACATGTGGTTTATATGGTGCTGGG  700

seq1  GATCAGACCTGGGGCTTTGTACATGCTAGGCCCTTTTCCCTTTTTTAAAA  750
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  GATCAGACCTGGGGCTTTGTACATGCTA-GCCCTTTTCCCTTTTTT-AAA  748

seq1  TTACATTTTGGACCTTGTACACCTAAGAAAATTTCTCCTTTTATATTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTTGGACCTTGTACACCTAAGAAAATTTCTCCTTTTATATTACT  798

seq1  TAGAAATAGGCTCTTAAAAAATATTACAATACCTTATTTGTGGGTGAGGG  850
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TAGAAATAGGCTCTT-AAAAATATTAC-ATACCTTATTTGTGGGTGAGGG  846

seq1  TGTGTGTGCATGCCGTGGTGCACATTCGGGGGTCTGAGGTCAGCTTGTAG  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTGTGTGCATGCCGTGGTGCACATTCGGGGGTCTGA-GTCAGCTTGTAG  895

seq1  GAATCTGTTCTCCCCTTCACCCTATGGGGCTGCACTCATCAGGCTTGGTG  950
      |||||| ||||||||||||||||||  |||||||||  ||| ||||| ||
seq2  GAATCT-TTCTCCCCTTCACCCTAT-TGGCTGCACTATTCA-GCTTGATG  942

seq1  GGAAGCACCTATACTTGCTGAATGA  975
      ||||||| ||||||| |||||||||
seq2  GGAAGCAACTATACTAGCTGAATGA  967