BAC Information

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BAC

Clone NameB6Ng01-023N12
Chromosome18 (Build37)
Map Location 65,029,466 - 65,198,722
singlet/doubletdoublet
Overlap geneNedd4l
Upstream geneWdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
Downstream geneAlpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023N12.bB6Ng01-023N12.g
ACCDH855650DH855651
length1,0861,082
definitionDH855650|Mus musculus domesticus DNA, BAC clone: B6Ng01-023N12, 5' end.DH855651|Mus musculus domesticus DNA, BAC clone: B6Ng01-023N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,197,609 - 65,198,722)(65,029,466 - 65,030,101)
sequence
gaattcctatcctgacttccctccatgatgaggggtgaccagagagctat
aagagaaaacaaaccatttccccactgagttgtttctggtcgtgaataga
aaccccaagtaagatcaatggttgccttacacttctatgcatttgtcttt
gaaagaacagacattttctttagaatgtttattgtttgtgttttaaacct
agcccccttgacaattcttactcgctttagaaactgctcttccttagagg
atcttggagttacaggcacacaaccctttcagcaagccttcagtacaata
ttaaatcattgtaaaaggggggcgggaacttggttgattcctaattttaa
tcaaaacagtttgagagttttgacttttgaatatctgctgttgtgaaata
cacacacatacacacacacacacacacacacacatacacaaatacacgtg
cgcgcgcccgcacatgggagcacctttgttatttttcttcctcctggttt
gcttttttcagatttattgtattattaatatctacgacctttatcagcca
gctctgttctctgcagtcggtggcctctgctgtcttggcaagcacacatc
tcttgacgcatttgtacaacaacccacgacaactggaagagtcccctgtc
ctttaactcccaagtacagtgtaatacactgactacagtgtattggcctt
acccaaaaatctactggttaataagctattgtaaacttcatgcatagata
atattactctacattgcttaaatgttatcagtggggcttcagtgatagct
taccacttaactgctctggcagaggacctggtttgagttccattaaaaaa
tagttcaaagtgtattggtattttattgtttgacatttcataaacacata
atacatttataaaaatccattgcctatccccccccccatcttatcgctca
cactcttccctccaagtcatgtgattttttttttttaataaagctacatt
gcttgccggcgtgtgctggtaatccagcactcggagacgaaggccagcct
gctcacatgagttccagacagccaagctatacgaga
gaattcttcctatggcagaaactacactgattcaaagtacatatttcctt
ctggagctccctgccccagtcccctacccccacaggctactgccacgcta
actggtgatgtaactgtgtctttaaaagcccatcccaccattccatcaag
ccagctgtttcagaattgcagacaacatggtaaagaagggctgtggactc
cttgatcattgttgtatgccagcctgcagcttacaaggaccgggtacacc
tgggaggtaggctggggctgaaaagagagaaaccagacggtcgagggaga
aaatggggctaagacaaaccacgattttactcagaaactgtgcttataag
gggaaaggcccatatcccgccccccactcttggtgcctggagccatttca
tcagaacttaccaggcttcttgatgtattgttgccaagttgttaacacca
gtctgccagttccacaggtagtcagctacctcaggaacatctcaggaaga
caggctcagcctctcagcaggtagcagaagagcagggcagttgtcacttc
aaagaggaacccgacaagtcgacaagtcacaaagctgcactgcaggtggc
cccatctcagtggtggcatggtctataccagcccgcttcaggctggggga
gcctacagatcatgagcccacagtctcacttttctaactgtgaactgagt
tccttggtcagaagcaatgctgtgtgttatatcatggcagtggataaggc
attctgtgcaccgatggtaatgttggcagaagcattctatgtaggaaagg
caactccatcaccagagtgcacatctaatccagtaagaacaaagtgttgc
cctttctataaagatatggtctagtgtcatcaacctgtctttagttactg
ggaggtcacccctgggaccaagtatttcatatataaatcttcttggagat
gtccactcaaacgacagcacggcgttggtctactttctatgtcatgacta
aaatattgaggaaatcagttaaaaggagaagctttcttgggctcgagttg
ccgagattttttcctgcagctgtctttgctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65197609_65198722
seq2: B6Ng01-023N12.b_45_1130 (reverse)

seq1  TCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGG  50
      |||| |||||||| ||||||| ||||||||||   ||| || ||||||||
seq2  TCTC-GTATAGCT-TGGCTGT-CTGGAACTCA---TGT-GAGCAGGCTGG  43

seq1  CCTCTGCCTCCCGAGTGCTGGGATTACCAGCACCACGCCCGGCAAGCACT  100
      |||  | || ||||||||| |||||||||||| |||| |||||||||| |
seq2  CCTTCGTCT-CCGAGTGCT-GGATTACCAGCA-CACG-CCGGCAAGCAAT  89

seq1  GGTAGGCTTTATTTAAAAAAAAAAAAAAATCACATGAACTTGGGAGGGAA  150
       ||| ||||||||    ||||||||||||||||||| |||| ||||||||
seq2  -GTA-GCTTTATT----AAAAAAAAAAAATCACATG-ACTT-GGAGGGAA  131

seq1  GAGTGGTGGAGGCGATAAGATGGGGGGGGGGGGATAGGCAATGGATTTTT  200
      |||| |||   ||||||||||  |||||||||||||||||||||||||||
seq2  GAGT-GTG--AGCGATAAGAT--GGGGGGGGGGATAGGCAATGGATTTTT  176

seq1  ATTAAAATGTATTATGTGTTTATGAAATTGTCAAACAATAAAATACCAAT  250
      ||  ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AT--AAATGTATTATGTGTTTATGAAA-TGTCAAACAATAAAATACCAAT  223

seq1  ACACTTTGAACTATTTTTTTAATGGAACTCAAACCAGGTCCTCTGCCAGA  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACACTTTGAACTA-TTTTTTAATGGAACTCAAACCAGGTCCTCTGCCAGA  272

seq1  GCAGTTAAGTGGTAAGCTATCACTGAAGCCCCACTGATAACATTTAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAGTGGTAAGCTATCACTGAAGCCCCACTGATAACATTTAAGCA  322

seq1  ATGTAGAGTAATATTATCTATGCATGAAGTTTACAATAGCTTATTAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAGTAATATTATCTATGCATGAAGTTTACAATAGCTTATTAACCA  372

seq1  GTAGATTTTTGGGTAAGGCCAATACACTGTAGTCAGTGTATTACACTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTTTGGGTAAGGCCAATACACTGTAGTCAGTGTATTACACTGTA  422

seq1  CTTGGGAGTTAAAGGACAGGGGACTCTTCCAGTTGTCGTGGGTTGTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGTTAAAGGACAGGGGACTCTTCCAGTTGTCGTGGGTTGTTGTA  472

seq1  CAAATGCGTCAAGAGATGTGTGCTTGCCAAGACAGCAGAGGCCACCGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCGTCAAGAGATGTGTGCTTGCCAAGACAGCAGAGGCCACCGACT  522

seq1  GCAGAGAACAGAGCTGGCTGATAAAGGTCGTAGATATTAATAATACAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAACAGAGCTGGCTGATAAAGGTCGTAGATATTAATAATACAATA  572

seq1  AATCTGAAAAAAGCAAACCAGGAGGAAGAAAAATAACAAAGGTGCTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAAAAAAGCAAACCAGGAGGAAGAAAAATAACAAAGGTGCTCCCA  622

seq1  TGTGCGGGCGCGCGCACGTGTATTTGTGTATGTGTGTGTGTGTGTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGGGCGCGCGCACGTGTATTTGTGTATGTGTGTGTGTGTGTGTGTG  672

seq1  TGTGTATGTGTGTGTATTTCACAACAGCAGATATTCAAAAGTCAAAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTGTGTGTATTTCACAACAGCAGATATTCAAAAGTCAAAACTC  722

seq1  TCAAACTGTTTTGATTAAAATTAGGAATCAACCAAGTTCCCGCCCCCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTGTTTTGATTAAAATTAGGAATCAACCAAGTTCCCGCCCCCCTT  772

seq1  TTACAATGATTTAATATTGTACTGAAGGCTTGCTGAAAGGGTTGTGTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATGATTTAATATTGTACTGAAGGCTTGCTGAAAGGGTTGTGTGCC  822

seq1  TGTAACTCCAAGATCCTCTAAGGAAGAGCAGTTTCTAAAGCGAGTAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCCAAGATCCTCTAAGGAAGAGCAGTTTCTAAAGCGAGTAAGAA  872

seq1  TTGTCAAGGGGGCTAGGTTTAAAACACAAACAATAAACATTCTAAAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGGGGGCTAGGTTTAAAACACAAACAATAAACATTCTAAAGAAA  922

seq1  ATGTCTGTTCTTTCAAAGACAAATGCATAGAAGTGTAAGGCAACCATTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTCTTTCAAAGACAAATGCATAGAAGTGTAAGGCAACCATTGA  972

seq1  TCTTACTTGGGGTTTCTATTCACGACCAGAAACAACTCAGTGGGGAAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTGGGGTTTCTATTCACGACCAGAAACAACTCAGTGGGGAAATG  1022

seq1  GTTTGTTTTCTCTTATAGCTCTCTGGTCACCCCTCATCATGGAGGGAAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTCTCTTATAGCTCTCTGGTCACCCCTCATCATGGAGGGAAGT  1072

seq1  CAGGATAGGAATTC  1114
      ||||||||||||||
seq2  CAGGATAGGAATTC  1086

seq1: chr18_65029466_65030101
seq2: B6Ng01-023N12.g_526_1150

seq1  AGTTCCACAGGTAGTCAGCTACCTCAGGAACATCTCAGGAAGACAGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACAGGTAGTCAGCTACCTCAGGAACATCTCAGGAAGACAGGCTC  50

seq1  AGCCTCTCAGCAGGTAGCAGAAGAGCAGGGCAGTTGTCACTTCAAAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCAGCAGGTAGCAGAAGAGCAGGGCAGTTGTCACTTCAAAGAGG  100

seq1  AACCCGACAAGTCGACAAGTCACAAAGCTGCACTGCAGGTGGCCCCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGACAAGTCGACAAGTCACAAAGCTGCACTGCAGGTGGCCCCATCT  150

seq1  CAGTGGTGGCATGGTCTATACCAGCCCGCTTCAGGCTGGGGGAGCCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGGCATGGTCTATACCAGCCCGCTTCAGGCTGGGGGAGCCTACA  200

seq1  GATCATGAGCCCACAGTCTCACTTTTCTAACTGTGAACTGAGTTCCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGAGCCCACAGTCTCACTTTTCTAACTGTGAACTGAGTTCCTTGG  250

seq1  TCAGAAGCAATGCTGTGTGTTATATCATGGCAGTGGATAAGGCATTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCAATGCTGTGTGTTATATCATGGCAGTGGATAAGGCATTCTGT  300

seq1  GCACCGATGGTAATGTTGGCAGAAGCATTCTATGTAGGAAAGGCAACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGATGGTAATGTTGGCAGAAGCATTCTATGTAGGAAAGGCAACTCC  350

seq1  ATCACCAGAGTGCACATCTAATCCAGTAAGAACAAAGTGTTGCCCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAGAGTGCACATCTAATCCAGTAAGAACAAAGTGTTGCCCTTTCT  400

seq1  ATAAAAGATATGGTCTAGTGTCATCAACCTGTCCTTAAGTTACT-GGAGG  449
      || ||||||||||||||||||||||||||||| ||| ||||||| |||||
seq2  AT-AAAGATATGGTCTAGTGTCATCAACCTGT-CTTTAGTTACTGGGAGG  448

seq1  TCACCCCTGGGACCAAGTATTCATTATATAAATC-TCTTGGAGAATGTCA  498
      |||||||||||||||||||||   |||||||||| |||||||| ||||| 
seq2  TCACCCCTGGGACCAAGTATTTCATATATAAATCTTCTTGGAG-ATGTC-  496

seq1  CACTCAAACGACAGCACGGCGTTGGTCTACTTTCTATTGTCATGACTAAA  548
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACTCAAACGACAGCACGGCGTTGGTCTACTTTCTA-TGTCATGACTAAA  545

seq1  ATATTGAGAAAATCAAGTTAAAAGGAGAAAAGCTTTCCTTGGGCTCAGAG  598
      |||||||| ||||| ||||||||||||  ||||||| ||||||||| |||
seq2  ATATTGAGGAAATC-AGTTAAAAGGAG--AAGCTTT-CTTGGGCTC-GAG  590

seq1  TTGCAGAGATTTTATCCTTGGCAAGCTGTCTTTGCTGT  636
      |||| |||||||| ||||  || |||||||||||||||
seq2  TTGCCGAGATTTTTTCCT--GC-AGCTGTCTTTGCTGT  625