BAC Information

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BAC

Clone NameB6Ng01-024H04
Chromosome18 (Build37)
Map Location 37,558,419 - 37,559,445
singlet/doubletsinglet
Overlap genenone
Upstream genePfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8
Downstream genePcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024H04.bB6Ng01-024H04.g
ACCDH856079DH856080
length1,021949
definitionDH856079|Mus musculus domesticus DNA, BAC clone: B6Ng01-024H04, 5' end.DH856080|Mus musculus domesticus DNA, BAC clone: B6Ng01-024H04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccattaacttgtaaactagtttgagggttatctctaatatccagt
cttcaagtagacacacacttcgtccttagataggtctcctataatttcct
tcagtgttgcctagtgatctgtatgaaatttgtctacacacttgtttgct
tcctttctaaacatcctgctcctttagattccaagggacttttccctcat
gtccactttgtccaatgctaacatgcagaggtgattaatctttggataat
gatcttctattgtatgcacttgctgaatttgttcattaatgttaacattt
ttgcagattatttagaattttatacatgcaaggccacaccatctatacat
agagaagtctataaaagtatagttttccacttctaattatcagattatct
gaaatgcttttctgcattgtgacatttatccataaggcatatttaattat
ttatcattgtatgttgagccagtatgttcccaggtaaatcctttacagct
ttggaatgtaatctcatttttttcactgatatatggcttatttataattg
tgcctcaaagattttaaaatacatgaatctttccagttatcttttttaaa
ttaggtatttatttcatttacatttccaatgctatcccaaaggtccccca
accatcccccccactcccctacccacccactcccactttttggccctggc
gttcccctgtactggagtatataaagtttgcctgtcaaataggcctctct
ttccagtgatggccaactaggccatcttttgatacatatgcaactagagt
caagagctctggggtactggttagttcataatgttgtccacctatagggt
tgcagatccctttagctccttgggtactttctctagctcctccactgggg
gccctgtgatccatccaatactgactatgagcatccactctgtgtttgca
aggcccggcatatctcacagagacagctatatctgggtcctttcagcaaa
atcttgctagtgatgcaatgt
gaattcttaaaagaggaaactcaaatggccgaaaaacaaagaaatgttca
acatcctcagccatcagggaaatggaaatcaaaactactctcagatttca
tctcacacctgtcagaattactaagataaacaaactaagtgacagctcat
gctggtaagaatgtgaagtcaagagaacactcatccattgctgtgggggt
accaccttgtacagccgccatggaagtcaaatggcagtccctaagaaggt
tgggaatcaatctatctcaagatccagctatacccctcttgggtaaattc
ccaaagcatgttttatcctaccataaggacttgctcaaccatgttcattg
ctgctttattcttaatagccagaaattgaacagccaagatgttcttcaaa
gaagaatggataagtaaaatgtggtacaattaacacaatggagtatgaaa
tttgcaggtaagtgggtggaactagaaaaaaaaatcatctcgaatgaggc
attccagacacagaaagagaaatattgtatgtatttacttatttgtggct
attatttgctatgtcaatgataaccaaggtacaatcagtagaatcacaga
ggttaggcatagagtaagggactagggcaagtggttcttagctttccttg
tgctgcaaccctttaacacagttctgcatattgtggtgacctctagccat
caaattatttcgttgctacttcataactataactttgctgctgttgtgaa
ttgtaatataaatatctgatgtgtaagaaatttgatatgtgaccctcaaa
gaagtctcaacccacaggttgagaactgatggactagggattacatacat
acagatctcactaggaaaggaaaatgcaatagagatttattgatggatgg
gtcagccagaataggagaataaactggtgaggggatgggagagagggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37558419_37559445
seq2: B6Ng01-024H04.b_31_1050 (reverse)

seq1  CATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTC  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAT-CACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTC  49

seq1  TCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCATA  100
      || ||||||| |||||| |||||| |||||||||| ||||||||||||||
seq2  TC-TGTGAGA-TATGCC-GGGCCTTGCAAACACAG-AGTGGATGCTCATA  95

seq1  GTCAGCTATTGGATGGATCACAGGGCCCCCAGTGGAGGAGCTAGAGAAAG  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAG-TATTGGATGGATCACAGGGCCCCCAGTGGAGGAGCTAGAGAAAG  144

seq1  TACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTAT  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGG-ACAACATTAT  193

seq1  GAACTAACCAGTACCCCAGAGCTCTTGACTCTAGTTGCATATGTATCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAACCAGTACCCCAGAGCTCTTGACTCTAGTTGCATATGTATCAAA  243

seq1  AGATGGCCTAGTTGGCCATCACTGGAAAGAGAGGCCTATTTGACAGGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCTAGTTGGCCATCACTGGAAAGAGAGGCCTATTTGACAGGCAA  293

seq1  ACTTTATATACTCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATATACTCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAGTG  343

seq1  GGTGGGTAGGGGAGTGGGGGGGATGGTTGGGGGACCTTTGGGATAGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTAGGGGAGTGGGGGGGATGGTTGGGGGACCTTTGGGATAGCATT  393

seq1  GGAAATGTAAATGAAATAAATACCTAATTTAAAAAAGATAACTGGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTAAATGAAATAAATACCTAATTTAAAAAAGATAACTGGAAAGA  443

seq1  TTCATGTATTTTAAAATCTTTGAGGCACAATTATAAATAAGCCATATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTATTTTAAAATCTTTGAGGCACAATTATAAATAAGCCATATATC  493

seq1  AGTGAAAAAAATGAGATTACATTCCAAAGCTGTAAAGGATTTACCTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAAAATGAGATTACATTCCAAAGCTGTAAAGGATTTACCTGGGA  543

seq1  ACATACTGGCTCAACATACAATGATAAATAATTAAATATGCCTTATGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTGGCTCAACATACAATGATAAATAATTAAATATGCCTTATGGAT  593

seq1  AAATGTCACAATGCAGAAAAGCATTTCAGATAATCTGATAATTAGAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCACAATGCAGAAAAGCATTTCAGATAATCTGATAATTAGAAGTG  643

seq1  GAAAACTATACTTTTATAGACTTCTCTATGTATAGATGGTGTGGCCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTATACTTTTATAGACTTCTCTATGTATAGATGGTGTGGCCTTGC  693

seq1  ATGTATAAAATTCTAAATAATCTGCAAAAATGTTAACATTAATGAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAAAATTCTAAATAATCTGCAAAAATGTTAACATTAATGAACAAA  743

seq1  TTCAGCAAGTGCATACAATAGAAGATCATTATCCAAAGATTAATCACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAAGTGCATACAATAGAAGATCATTATCCAAAGATTAATCACCTC  793

seq1  TGCATGTTAGCATTGGACAAAGTGGACATGAGGGAAAAGTCCCTTGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTAGCATTGGACAAAGTGGACATGAGGGAAAAGTCCCTTGGAAT  843

seq1  CTAAAGGAGCAGGATGTTTAGAAAGGAAGCAAACAAGTGTGTAGACAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAGCAGGATGTTTAGAAAGGAAGCAAACAAGTGTGTAGACAAAT  893

seq1  TTCATACAGATCACTAGGCAACACTGAAGGAAATTATAGGAGACCTATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAGATCACTAGGCAACACTGAAGGAAATTATAGGAGACCTATCT  943

seq1  AAGGACGAAGTGTGTGTCTACTTGAAGACTGGATATTAGAGATAACCCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACGAAGTGTGTGTCTACTTGAAGACTGGATATTAGAGATAACCCTC  993

seq1  AAACTAGTTTACAAGTTAATGGAATTC  1027
      |||||||||||||||||||||||||||
seq2  AAACTAGTTTACAAGTTAATGGAATTC  1020