BAC Information

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BAC

Clone NameB6Ng01-024O08
Chromosome18 (Build37)
Map Location 20,046,840 - 20,166,204
singlet/doubletdoublet
Overlap geneDsc3
Upstream geneLOC665624, LOC665629
Downstream geneDsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024O08.bB6Ng01-024O08.g
ACCDH856396DH856397
length1,1281,140
definitionDH856396|Mus musculus domesticus DNA, BAC clone: B6Ng01-024O08, 5' end.DH856397|Mus musculus domesticus DNA, BAC clone: B6Ng01-024O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,046,840 - 20,047,954)(20,165,075 - 20,166,204)
sequence
gaattcctcttcagatatttctataaaacagctaattaagaaacaggttt
taattcccaatgtgttagaaaacaaaaggtttagtgaacattttctaata
ttctcctcgttctgaaaacaattttgttctctcaggtcactactaatttc
ataagcacaacattaggcaaagctgtctctagaacgtctgcatcagtctc
taagctctgtatactgtttttatcatgcactcatatcggaaatccttctt
tacctcatgtactcctctttctctctctacaccataaaaagaaaggacta
tgcccatttcacactcttttgtgaacctggtactcctggtgatgtaattt
tcattaggtgggaatcactcccgaatcaaagcctctgtttggttgccacc
atccccaccccaatcatgattttgtgcctcctcattcactccctgttgga
aactgtcaatagatagtctactcatacttcaaacaaaatccaattccatc
ccatagcctggagcccttccccttcactgcttcactcagtaagtgatttg
tggtgtcaaccctgtgttctcactcttatgatcacagagctagagatttt
ttttctagtaagatgaaactaggaaatattttaggttttgtagtcatgtt
ggataatgcacaggaatcagttttgtttttagttacctatctagtcctca
cacgttttgatttcaatctcctgtatcccaggtattcccatcatcaaacc
aatttataggggaaaacattttcacatatatagctgtttagcccaaattc
atcaacattcataatcaaatagtcaaaaataattttttgtttcggaattt
cacttgatgtctcattttttgcaatttttactttaggaatatctttctta
agttttttttagcttaatttaaaaatatttgcattgaataaattatacat
attaaattaaatatttgagcactttatcaatgtataccttttggtacatt
ttatgtggagaataagttgctttcatctagccactctttaaacatcccaa
ttacttggattcagaagaaaattcatagcagtttctctaaaccggttccc
ctcatcctgcctgactttcgttccctcc
gaattcttactggaaagtgtggataaatatattttctgataaattcctac
acaactactaggaagactgatatctcatttccagtattttgaaaaatatt
atatatagttattttatgtatatgagtggttgtcatgttcaccaagtttg
tacctgatgcccacagaagcgagaaaaaagagttgaatttgaatctggag
ttacagacagttgtggctgctgagaaataaagccctatctttttcaagaa
cagaaaatacttttaaccactaagtcatcatctctctagtgccttccctc
ttaaatgttcataaaggaccactgagttgaatttatgaaagagtgggact
ctggatgtattcttacacagatgaagttgggagcaggataattggagagg
aagagtgggatgcagatatgacctaagtacattgtattcattgatgagat
tttcagaccatactaaaaagattttaaaatctcagccagtcttggtgttg
tcaggctaaggaaagagaatcagtgtgagttcagtcatgagatacaaagt
gagttccagaccatcctgggctgcctaataggactctactcagaaaaaaa
aaaaaaaaagccaaaatatcccagaacaaatagcacatcaaaaaagaaca
caaacaaacaaaaagattttacaataagccagtgcacaaattttaataaa
cttatacacaattcattttaaataaaacttaggcacaattattgctaaag
caaagaatgaaggaaaggttgttaaacaaaggcatggacttcacataggg
agttgataggaagctcctttgtactcctgatctaggtgacaagcctctga
accggggattgtgcttgttgcctaggcagatgttgaatgatgggtcctca
ggttctggggaaacttggaggctgatggggcagtgattcaagcatgacgc
taggaataatgacacaggagatcctggaagtcagcccactcacatcttaa
cgttcattgcctggacatattctacattcaggcagatgcttacagttgag
ctccaaaggacacgggaagttctgaaaaaactgaagttctcatccagtta
gagaagattcttccctcctgaagaaatttaggctgggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_20046840_20047954
seq2: B6Ng01-024O08.b_44_1171

seq1  GAATTCCTCTTCAGATATTTCTATAAAACAGCTAATTAAGAAACAGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCAGATATTTCTATAAAACAGCTAATTAAGAAACAGGTTT  50

seq1  TAATTCCCAATGTGTTAGAAAACAAAAGGTTTAGTGAACATTTTCTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCAATGTGTTAGAAAACAAAAGGTTTAGTGAACATTTTCTAATA  100

seq1  TTCTCCTCGTTCTGAAAACAATTTTGTTCTCTCAGGTCACTACTAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCGTTCTGAAAACAATTTTGTTCTCTCAGGTCACTACTAATTTC  150

seq1  ATAAGCACAACATTAGGCAAAGCTGTCTCTAGAACGTCTGCATCAGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACAACATTAGGCAAAGCTGTCTCTAGAACGTCTGCATCAGTCTC  200

seq1  TAAGCTCTGTATACTGTTTTTATCATGCACTCATATCGGAAATCCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTGTATACTGTTTTTATCATGCACTCATATCGGAAATCCTTCTT  250

seq1  TACCTCATGTACTCCTCTTTCTCTCTCTACACCATAAAAAGAAAGGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCATGTACTCCTCTTTCTCTCTCTACACCATAAAAAGAAAGGACTA  300

seq1  TGCCCATTTCACACTCTTTTGTGAACCTGGTACTCCTGGTGATGTAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTTCACACTCTTTTGTGAACCTGGTACTCCTGGTGATGTAATTT  350

seq1  TCATTAGGTGGGAATCACTCCCGAATCAAAGCCTCTGTTTGGTTGCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGGTGGGAATCACTCCCGAATCAAAGCCTCTGTTTGGTTGCCACC  400

seq1  ATCCCCACCCCAATCATGATTTTGTGCCTCCTCATTCACTCCCTGTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCACCCCAATCATGATTTTGTGCCTCCTCATTCACTCCCTGTTGGA  450

seq1  AACTGTCAATAGATAGTCTACTCATACTTCAAACAAAATCCAATTCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCAATAGATAGTCTACTCATACTTCAAACAAAATCCAATTCCATC  500

seq1  CCATAGCCTGGAGCCCTTCCCCTTCACTGCTTCACTCAGTAAGTGATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCCTGGAGCCCTTCCCCTTCACTGCTTCACTCAGTAAGTGATTTG  550

seq1  TGGTGTCAACCCTGTGTTCTCACTCTTATGATCACAGAGCTAGAGATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCAACCCTGTGTTCTCACTCTTATGATCACAGAGCTAGAGATTTT  600

seq1  TTTTCTAGTAAGATGAAACTAGGAAATATTTTAGGTTTTGTAGTCATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGTAAGATGAAACTAGGAAATATTTTAGGTTTTGTAGTCATGTT  650

seq1  GGATAATGCACAGGAATCAGTTTTGTTTTTAGTTACCTATCTAGTCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATGCACAGGAATCAGTTTTGTTTTTAGTTACCTATCTAGTCCTCA  700

seq1  CACGTTTTGATTTCAATCTCCTGTATCCCAGGTATTCCCATCATCAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTTTGATTTCAATCTCCTGTATCCCAGGTATTCCCATCATCAAACC  750

seq1  AATTTATAGGGGAAAACATTTTCACATATATAGCTGTTTAGCCCAAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATAGGGGAAAACATTTTCACATATATAGCTGTTTAGCCCAAATTC  800

seq1  AATCAACATTCATAATCAAATAGTCAAAAATAA-TTTATGTTTCGGAATT  849
       |||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  -ATCAACATTCATAATCAAATAGTCAAAAATAATTTTTTGTTTCGGAATT  849

seq1  TCACTTGATGTCTCATTTTTTGCAATTTTTAACTTTAGGAATTATCTTTC  899
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  TCACTTGATGTCTCATTTTTTGCAATTTTT-ACTTTAGGAA-TATCTTTC  897

seq1  TTAAGTTTTTTATAGCTTAATTTAAAAATAATATGCATTGAATAAATTAT  949
      ||||||||||| ||||||||||||||||| || |||||||||||||||||
seq2  TTAAGTTTTTTTTAGCTTAATTTAAAAAT-ATTTGCATTGAATAAATTAT  946

seq1  ACATATTTAAATTAAATAATTTGAGCACTTTATCAATGTATTACTTTTTG  999
      ||||| ||||||||||| |||||||||||||||||||||| ||| |||||
seq2  ACATA-TTAAATTAAAT-ATTTGAGCACTTTATCAATGTA-TACCTTTTG  993

seq1  GTACATTTTATGTGGAGATATAGCTTGCATTCCATCTAAGCCACTCTTTA  1049
      |||||||||||||||||| |||  |||| || ||||| ||||||||||||
seq2  GTACATTTTATGTGGAGA-ATAAGTTGC-TTTCATCT-AGCCACTCTTTA  1040

seq1  AACATCCCAATTACTTGAATTCAGAAAAAAAATTCATTAGCAGTTACTCT  1099
      ||||||||||||||||| |||||| || |||||||| |||||||| ||||
seq2  AACATCCCAATTACTTGGATTCAG-AAGAAAATTCA-TAGCAGTTTCTCT  1088

seq1  AATAACTGTTCCC----TCC---------------------  1115
      || | | ||||||    |||                     
seq2  AA-ACCGGTTCCCCTCATCCTGCCTGACTTTCGTTCCCTCC  1128

seq1: chr18_20165075_20166204
seq2: B6Ng01-024O08.g_70_1208 (reverse)

seq1  ATCCCAG-CTATAATTCTTTCAGAGGGAAGAATC-TCT-TTACTGGATGA  47
      ||||||| ||| | |||||   |||||||||||| ||| | |||||||||
seq2  ATCCCAGCCTAAATTTCTTCAGGAGGGAAGAATCTTCTCTAACTGGATGA  50

seq1  G-ACTTCAGTTTTTTCTGGACCTTCCCGTGTCCTTTGGAGCTC-ACTGTA  95
      | ||||||||||||||  || |||||||||||||||||||||| ||||||
seq2  GAACTTCAGTTTTTTC-AGAACTTCCCGTGTCCTTTGGAGCTCAACTGTA  99

seq1  AGCTTCTGCCTGTATGTAGGATATTGTCCAGGC-ATGAACGTTAAGATGT  144
      ||| |||||||| |||||| ||| ||||||||| ||||||||||||||||
seq2  AGCATCTGCCTGAATGTAGAATA-TGTCCAGGCAATGAACGTTAAGATGT  148

seq1  GAGTGGGCTGACTTCCA-GATCTCCTGTGTCATTA-TCCTAGCGTCATGC  192
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  GAGTGGGCTGACTTCCAGGATCTCCTGTGTCATTATTCCTAGCGTCATGC  198

seq1  TTGAATCACTGCCCCATCAGCCT-CTAGTTT-CCCAGAACCTGAGGA-CC  239
      ||||||||||||||||||||||| | ||||| ||||||||||||||| ||
seq2  TTGAATCACTGCCCCATCAGCCTCCAAGTTTCCCCAGAACCTGAGGACCC  248

seq1  ATCCTTCAACATCTGCCTAGGCAACTAGCACAGTCCCCGGTTCAGAGGCT  289
      ||| ||||||||||||||||||||| |||||| |||||||||||||||||
seq2  ATCATTCAACATCTGCCTAGGCAACAAGCACAATCCCCGGTTCAGAGGCT  298

seq1  TGTCACCTAGATCAGGAGTACAAAGGAGCTTCCTATCAACTCCCTATGTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTAGATCAGGAGTACAAAGGAGCTTCCTATCAACTCCCTATGTG  348

seq1  AAGTCCATGCCTTTGTTTAACAACCTTTCCTTCATTCTTTGCTTTAGCAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATGCCTTTGTTTAACAACCTTTCCTTCATTCTTTGCTTTAGCAA  398

seq1  TAATTGTGCCTAAGTTTTATTTAAAATGAATTGTGTATAAGTTTATTAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTGCCTAAGTTTTATTTAAAATGAATTGTGTATAAGTTTATTAAA  448

seq1  ATTTGTGCACTGGCTTATTGTAAAATCTTTTTGTTTGTTTGTGTTCTTTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGCACTGGCTTATTGTAAAATCTTTTTGTTTGTTTGTGTTCTTTT  498

seq1  TTGATGTGCTATTTGTTCTGGGATATTTTGGCTTTTTTTTTTTTTTTTCT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGCTATTTGTTCTGGGATATTTTGGCTTTTTTTTTTTTTTTTCT  548

seq1  GAGTAGAGTCCTATTAGGCAGCCCAGGATGGTCTGGAACTCACTTTGTAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGTCCTATTAGGCAGCCCAGGATGGTCTGGAACTCACTTTGTAT  598

seq1  CTCATGACTGAACTCACACTGATTCTCTTTCCTTAGCCTGACAACACCAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGACTGAACTCACACTGATTCTCTTTCCTTAGCCTGACAACACCAA  648

seq1  GACTGGCTGAGATTTTAAAATCTTTTTAGTATGGTCTGAAAATCTCATCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTGAGATTTTAAAATCTTTTTAGTATGGTCTGAAAATCTCATCA  698

seq1  ATGAATACAATGTACTTAGGTCATATCTGCATCCCACTCTTCCTCTCCAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACAATGTACTTAGGTCATATCTGCATCCCACTCTTCCTCTCCAA  748

seq1  TTATCCTGCTCCCAACTTCATCTGTGTAAGAATACATCCAGAGTCCCACT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTGCTCCCAACTTCATCTGTGTAAGAATACATCCAGAGTCCCACT  798

seq1  CTTTCATAAATTCAACTCAGTGGTCCTTTATGAACATTTAAGAGGGAAGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATAAATTCAACTCAGTGGTCCTTTATGAACATTTAAGAGGGAAGG  848

seq1  CACTAGAGAGATGATGACTTAGTGGTTAAAAGTATTTTCTGTTCTTGAAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAGAGATGATGACTTAGTGGTTAAAAGTATTTTCTGTTCTTGAAA  898

seq1  AAGATAGGGCTTTATTTCTCAGCAGCCACAACTGTCTGTAACTCCAGATT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGGCTTTATTTCTCAGCAGCCACAACTGTCTGTAACTCCAGATT  948

seq1  CAAATTCAACTCTTTTTTCTCGCTTCTGTGGGCATCAGGTACAAACTTGG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCAACTCTTTTTTCTCGCTTCTGTGGGCATCAGGTACAAACTTGG  998

seq1  TGAACATGACAACCACTCATATACATAAAATAACTATATATAATATTTTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGACAACCACTCATATACATAAAATAACTATATATAATATTTTT  1048

seq1  CAAAATACTGGAAATGAGATATCAGTCTTCCTAGTAGTTGTGTAGGAATT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACTGGAAATGAGATATCAGTCTTCCTAGTAGTTGTGTAGGAATT  1098

seq1  TATCAGAAAATATATTTATCCACACTTTCCAGTAAGAATTC  1130
      |||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAAAATATATTTATCCACACTTTCCAGTAAGAATTC  1139