BAC Information

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BAC

Clone NameB6Ng01-024P11
Chromosome18 (Build37)
Map Location 37,447,089 - 37,448,243
singlet/doubletsinglet
Overlap genenone
Upstream genePura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1
Downstream genePcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024P11.bB6Ng01-024P11.g
ACCDH856446DH856447
length8161,139
definitionDH856446|Mus musculus domesticus DNA, BAC clone: B6Ng01-024P11, 5' end.DH856447|Mus musculus domesticus DNA, BAC clone: B6Ng01-024P11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaataaggattgtcaggatatcagcattgccacttcacaaaaatc
agcagtggtagcttgatccagtcccaaacaccattcatgaatcaggaatg
gcaatttgattcagagaaaacctcgaggctctgccaattggctcaagttt
gagaaatcatgaagaagcctctacaacaccaccagaagttctttgatgca
gttctctctgtgaagtcacaacaaacaatgaccagcaaagagtggcaagg
tgaaccaatgccacatcatcatccactgtctgttggattattttataccc
tttccaaacatcacatgttctctcaagcatatgctctagcaaagatcaca
tgccccctttccaggctgttttcagaaaaacaccacgtgtctgttctcag
caaaacatctcagaggtgagatagaaaaccaagtgcaatggaaacatcca
ggaatctatgagggtgacactagctaagactgagaaaataagggctgcag
cccgaaccagccatctcctgtaaccaggcaaaacttccagtgaagagatt
gggacaccaatccaccccaaaaaattgacctacattttttctggctgaaa
aagtgctggaaaaaggtggaaaaaaattgtgggaatgggctaccaatgat
gggccctattgaaaccccggtataaattggggcccacccaatttttttca
aaaggcttacccacacttaggaaacaatttggaatcccacccaacttttg
gtcaaaaaatcttctaagggaagaaggttttaaacccaaggggcaattcc
tcaagaaacctaaaaa
gaattcagaaagccttgaagactaacgagaagtttagtgtgaatagaagc
catttattaagaagtgctaaactgaatatacaaaagtagacagaagcaat
ggcatttgaggtgtggtacatgcctgtaatacctgcattccaaagggaaa
gcaagacaatcttgactttgagacaatcttgagctacacacttcgatcct
atctcaaacaaacaaacaaacaaacaaacaaacaaagcaatgaggaatca
ctgtagtgatctcagcagggttaatatattgctttgattgattagattac
tgctttcacagagttagattccttgaactgcatccgtgcacccatgcatg
catacacaggtacacaaaaacaatttttaaccacagaaaaataccctata
tgagggtattgtgactacagttgtgaatataaattgaataattcaaatta
ttattattatctcacctaaatggtgagatagatgaaagttttgcaattaa
agaaaaacttcagaaatgcctttatatgcttttcatctgattggcttata
aaactgtatgttctatttttaataaaaaaaagattgactcttggagaaat
tagatactttaaagaaaaagctaattatgcattttataagcaataatttt
gggtctctaataaatccacctttaacatacacatctccttcaactgtgta
ttacttgatgtatcattttggcattttattaaaaacaaagtcatttgatg
atttcgataggaaaatgaaagtttagactaagcctggttgtacatgccta
tagtctcagcactccagaagtcaaggaaagcagataaagctcatggccat
cctggacaacacagtgagacccacccacctctgagggaaagcatagaagt
acatgtttcttttatcatttagtgataaacccaagaattgctacatagag
aagtagaaaaacctgaatgctaaatttgtgtttgcaatttctgtttcatt
tcactgaacagaaaaaacacaatctttaccactaccactatacatcttcc
ataactgaagaaaatctcatgtaggacctgttaggaagatgctaatagtt
ataattacatttacattcactctttagaaagagttgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37447089_37448243
seq2: B6Ng01-024P11.g_69_1207

seq1  GAATTCAGAAAGCCTTGAAGACTAACGAGAAGTTTAGTGTGAATAGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGCCTTGAAGACTAACGAGAAGTTTAGTGTGAATAGAAGC  50

seq1  CATTTATTAAGAAGTGCTAAACTGAATATACAAAAGTAGACAGAAGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTAAGAAGTGCTAAACTGAATATACAAAAGTAGACAGAAGCAAT  100

seq1  GGCATTTGAGGTGTGGTACATGCCTGTAATACCTGCATTCCAAAGGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGAGGTGTGGTACATGCCTGTAATACCTGCATTCCAAAGGGAAA  150

seq1  GCAAGACAATCTTGACTTTGAGACAATCTTGAGCTACACACTTCGATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACAATCTTGACTTTGAGACAATCTTGAGCTACACACTTCGATCCT  200

seq1  ATCTCAAACAAACAAACAAACAAACAAACAAACAAAGCAATGAGGAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAACAAACAAACAAACAAACAAACAAACAAAGCAATGAGGAATCA  250

seq1  CTGTAGTGATCTCAGCAGGGTTAATATATTGCTTTGATTGATTAGATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTGATCTCAGCAGGGTTAATATATTGCTTTGATTGATTAGATTAC  300

seq1  TGCTTTCACAGAGTTAGATTCCTTGAACTGCATCCGTGCACCCATGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCACAGAGTTAGATTCCTTGAACTGCATCCGTGCACCCATGCATG  350

seq1  CATACACAGGTACACAAAAACAATTTTTAACCACAGAAAAATACCCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAGGTACACAAAAACAATTTTTAACCACAGAAAAATACCCTATA  400

seq1  TGAGGGTATTGTGACTACAGTTGTGAATATAAATTGAATAATTCAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTATTGTGACTACAGTTGTGAATATAAATTGAATAATTCAAATTA  450

seq1  TTATTATTATCTCACCTAAATGGTGAGATAGATGAAAGTTTTGCAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATCTCACCTAAATGGTGAGATAGATGAAAGTTTTGCAATTAA  500

seq1  AGAAAAACTTCAGAAATGCCTTTATATGCTTTTCATCTGATTGGCTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACTTCAGAAATGCCTTTATATGCTTTTCATCTGATTGGCTTATA  550

seq1  AAACTGTATGTTCTATTTTTAATAAAAAAAAGATTGACTCTTGGAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTATGTTCTATTTTTAATAAAAAAAAGATTGACTCTTGGAGAAAT  600

seq1  TAGATACTTTAAAGAAAAAGCTAATTATGCATTTTATAAGCAATAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACTTTAAAGAAAAAGCTAATTATGCATTTTATAAGCAATAATTTT  650

seq1  GGGTCTCTAATAAATCCACCTTTAACATACACATCTCCTTCAACTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTAATAAATCCACCTTTAACATACACATCTCCTTCAACTGTGTA  700

seq1  TTACTTGATGTATCATTTTGGCATTTTATTAAAAACAAAGTCATTTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGATGTATCATTTTGGCATTTTATTAAAAACAAAGTCATTTGATG  750

seq1  ATTTCGATAGGAAAATGAAAGTTTAGACTAAGCCTGGTTGTACATGCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGATAGGAAAATGAAAGTTTAGACTAAGCCTGGTTGTACATGCCTA  800

seq1  TAGTCTCAGCACTCCAGAAGTCAAGGAAAGCAGATAAAGCTCATGGCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCAGCACTCCAGAAGTCAAGGAAAGCAGATAAAGCTCATGGCCAT  850

seq1  CCTGGACAACACAGTGAGACCCACCCACCTCTGAGGGAAAGCATAGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACAACACAGTGAGACCCACCCACCTCTGAGGGAAAGCATAGAAGT  900

seq1  ACATGTTTCTTTTATCATTTAAGTGATAAACCCAAGGAATTGCTACATAG  950
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  ACATGTTTCTTTTATCATTT-AGTGATAAACCCAA-GAATTGCTACATAG  948

seq1  AGAAGTAGAAAAAACCTGAATGCTAAATTTGTGTTTGCCAATTTCTGTTT  1000
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAGTAG-AAAAACCTGAATGCTAAATTTGTGTTTG-CAATTTCTGTTT  996

seq1  CATTTTCACTGAACAGAAAAAACAACAATTCTTTACCAACTACCACTATA  1050
      || |||||||||||||||||||| |||| |||||||| ||||||||||| 
seq2  CA-TTTCACTGAACAGAAAAAAC-ACAA-TCTTTACC-ACTACCACTAT-  1041

seq1  ACATCTCCCATACACTGAAAGAAAAATCTCATGTAAGGACTCGTTAAAGA  1100
      |||||| ||||| ||||||   |||||||||||| |||||  ||| | ||
seq2  ACATCTTCCATA-ACTGAA--GAAAATCTCATGT-AGGACCTGTT-AGGA  1086

seq1  AGATTGCAAAATAGTTAT-ATTACATATTACA-TCACTCTTTTAGAAAGA  1148
      ||| |||  ||||||||| ||||||| ||||| |||||| ||||||||||
seq2  AGA-TGC-TAATAGTTATAATTACAT-TTACATTCACTC-TTTAGAAAGA  1132

seq1  GTTGCAC  1155
      |||||||
seq2  GTTGCAC  1139