BAC Information

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BAC

Clone NameB6Ng01-024P13
Chromosome18 (Build37)
Map Location 62,744,901 - 62,875,817
singlet/doubletdoublet
Overlap geneSpink10, EG408198
Upstream geneCsnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4, Fbxo38
Downstream gene2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik, LOC627792, Txnl1, Wdr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024P13.bB6Ng01-024P13.g
ACCDH856450DH856451
length1,1011,129
definitionDH856450|Mus musculus domesticus DNA, BAC clone: B6Ng01-024P13, 5' end.DH856451|Mus musculus domesticus DNA, BAC clone: B6Ng01-024P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,874,710 - 62,875,817)(62,744,901 - 62,746,037)
sequence
gaattccacaatcaccaaagggcccagattttgccaagaatctgagcaac
ccaacaccttcataaaaaaaaaatacccttcttagtgtcacccagatctg
tgagagtcactggatatgtccagaaaactcgctacgataaagtctcccag
gtatctgggaagcttccagttctggcccaaaaattctgacttgaggatac
tatctcagccttggacactttgatgtagagttttagagacatggttaatg
tgataagattgaattccagtcccctccctgttatgaattctgctttgaac
cataaaaatataaccaacagataaaagatcaagggaaatgtctgatttta
tcttgagtccagtattaggaaatattgagacatcccagacacaaagtgtg
ctaggatgaagagatagacaattctgttgtattctgcctccagcccttca
agtgttgggctggtcttttcagcattaatggagcatccagtcccagcttc
tcaacagtaagaggtagccggacacatctttgctctgcattctggcctct
gcttccatgtgcggtacagttctggggtttattgtcttcatcccatgtca
ttttggtcagtgtctcttacaccaatgcttctacctggaaagactgagca
ggcaaatccaggtaactcagtgaagaacaggcaccctctacgtagatggg
gataacatagaccaatcagctgtctgtctcttggaaaatgcccacaggaa
ctgggaaggcctgagggcctcaaacaaccttcattagactcgggctagaa
gaagctttgccagataatgctcttcttgatgtcctgaataacgtattgag
catgcgtgtgggtagtagacacctgcagtcccagcacatggaatgcagga
ggagacagatcatgaggatagcctgggcctcacagaggaggtctgtggtt
tgtccctcactattttctttactgtgtggaagtttgtatgttgaactcag
caattgtcaagtggtgttgtacttctgaacactcctcggagaatcctgct
tatcctgggttttcagagatgcccttctcaccagtcagaaatggctgcat
c
gaattccttctgaaagatgattacataatatgacttaaattaatgccagt
ttacatttggctggcacattagcattacttagtgtgtccacatctgtgtt
agttgactaacatataggcttgaggtggggagtgtcattttctcgtttta
tagacagagactggtctttagggaggttaagtcacctaagatctcagagc
tacagaatgatggcagggcttcagactcaggtccttgtgtacagttctca
ccttcatgcaatagtttcctcttcacgtgggtttggtgcagtgattgcaa
tggttgctatcaccagctatttggttttctcatttacattcctcttcaac
tggaaggcttctaggacaggtttcagcattgttctaatattgtaagtgca
ttcctcaatcctagttgccatggtttgaacagtgacacagtctccaatac
aaaatgttcagtttacatacagtgagtacaaggagtgtagccagtgagag
agatagccaagtacctatgaatctacctgttttctgtaggaaaaacatct
ggcatcctcaaagcgctgggattatgatctgtgtgaatatgttaatgatc
cactgtgcagactgagtgctcccggactctttgacaatgattgccatgtt
tccaagcaggactgactaaaagttcaagtatgtgtggatggaccaggaac
tagaaatttaggctgcagaggttgtgtggtggttgaggacgaggtctgat
ccccagggacatatatagtggctctgaaccatctttaaatcaatcttgag
gggattcagtgctctcctggctgcgggtcactgcacgcacatgctggaca
gatatacaggcagcaaaatattttatacatacaataaaataaaaaacaaa
taaaagtttcaaatttgttgaagagctagaggcatttatgtacagtctca
aagttattacttagtaattatccaaggtgcatgctgctttaaaagaagaa
gagccattttgcacttctctgttctgcccaggttgaaagaaagaaaaaaa
taaacataaatagcaaaatttctgtggctttagcttaacttattaacaat
tcaatttatgatgttagtcagcagtaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62874710_62875817
seq2: B6Ng01-024P13.b_45_1145 (reverse)

seq1  GATGACAGCCA-TTCTGACTGGGTGAG-GTGGCATCTCTTGAAAACACAG  48
      |||| |||||| |||||||| ||||||   |||||||| ||||||| |||
seq2  GATG-CAGCCATTTCTGACT-GGTGAGAAGGGCATCTC-TGAAAACCCAG  47

seq1  GAATAAGCAAGGATTCTCCGA-GAGTGTTTCAGGAAGTAACAACACCACT  97
      | |||||| |||||||||||| ||||| |||| ||||| |||||||||||
seq2  G-ATAAGC-AGGATTCTCCGAGGAGTG-TTCA-GAAGT-ACAACACCACT  92

seq1  TGACAATTGCTGAGTTCACATTACAAAACTTCCACACAGTAAAGAAAATA  147
      ||||||||||||||||||   ||| |||||||||||||||||||||||||
seq2  TGACAATTGCTGAGTTCAACATAC-AAACTTCCACACAGTAAAGAAAATA  141

seq1  GTGAGGGGACAAACCACAGACCTCCTCTGTGAGGCCCAGGCTATCCTCAT  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGA-GGGACAAACCACAGACCTCCTCTGTGAGGCCCAGGCTATCCTCAT  190

seq1  GATCTGTCTCCTCCTGCCTTCCATGTGCTGGGACTGCAGGTGTCTACTAC  247
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATCTGTCTCCTCCTGCATTCCATGTGCTGGGACTGCAGGTGTCTACTAC  240

seq1  CCACACGCATGCTCAATACGTTATTCAGGACATCAAGAAGAGCATTATCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGCATGCTCAATACGTTATTCAGGACATCAAGAAGAGCATTATCT  290

seq1  GGCAAAGCTTCTTCTAGCCCGAGTCTAATGAAGGTTGTTTGAGGCCCTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCTTCTTCTAGCCCGAGTCTAATGAAGGTTGTTTGAGGCCCTCA  340

seq1  GGCCTTCCCAGTTCCTGTTGGCATTTTCCAAGAGACAGACAGCTGATTGG  397
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGCCTTCCCAGTTCCTGTGGGCATTTTCCAAGAGACAGACAGCTGATTGG  390

seq1  TCTATGTTATCCCCATCTACGTAGAGGGTGCCTGTTCTTCACTGAGTTAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTATCCCCATCTACGTAGAGGGTGCCTGTTCTTCACTGAGTTAC  440

seq1  CTGGATTTGCCTGCTCAGTCTTTCCAGGTAGAAGCATTGGTGTAAGAGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTGCCTGCTCAGTCTTTCCAGGTAGAAGCATTGGTGTAAGAGAC  490

seq1  ACTGACCAAAATGACATGGGATGAAGACAATAAACCCCAGAACTGTACCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCAAAATGACATGGGATGAAGACAATAAACCCCAGAACTGTACCG  540

seq1  CACATGGAAGCAGAGGCCAGAATGCAGAGCAAAGATGTGTCCGGCTACCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAAGCAGAGGCCAGAATGCAGAGCAAAGATGTGTCCGGCTACCT  590

seq1  CTTACTGTTGAGAAGCTGGGACTGGATGCTCCATTAATGCTGAAAAGACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTTGAGAAGCTGGGACTGGATGCTCCATTAATGCTGAAAAGACC  640

seq1  AGCCCAACACTTGAAGGGCTGGAGGCAGAATACAACAGAATTGTCTATCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAACACTTGAAGGGCTGGAGGCAGAATACAACAGAATTGTCTATCT  690

seq1  CTTCATCCTAGCACACTTTGTGTCTGGGATGTCTCAATATTTCCTAATAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCTAGCACACTTTGTGTCTGGGATGTCTCAATATTTCCTAATAC  740

seq1  TGGACTCAAGATAAAATCAGACATTTCCCTTGATCTTTTATCTGTTGGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCAAGATAAAATCAGACATTTCCCTTGATCTTTTATCTGTTGGTT  790

seq1  ATATTTTTATGGTTCAAAGCAGAATTCATAACAGGGAGGGGACTGGAATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTATGGTTCAAAGCAGAATTCATAACAGGGAGGGGACTGGAATT  840

seq1  CAATCTTATCACATTAACCATGTCTCTAAAACTCTACATCAAAGTGTCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTATCACATTAACCATGTCTCTAAAACTCTACATCAAAGTGTCCA  890

seq1  AGGCTGAGATAGTATCCTCAAGTCAGAATTTTTGGGCCAGAACTGGAAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGATAGTATCCTCAAGTCAGAATTTTTGGGCCAGAACTGGAAGC  940

seq1  TTCCCAGATACCTGGGAGACTTTATCGTAGCGAGTTTTCTGGACATATCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGATACCTGGGAGACTTTATCGTAGCGAGTTTTCTGGACATATCC  990

seq1  AGTGACTCTCACAGATCTGGGTGACACTAAGAAGGGTATTTTTTTTTTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTCTCACAGATCTGGGTGACACTAAGAAGGGTATTTTTTTTTTAT  1040

seq1  GAAGGTGTTGGGTTGCTCAGATTCTTGGCAAAATCTGGGCCCTTTGGTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTTGGGTTGCTCAGATTCTTGGCAAAATCTGGGCCCTTTGGTGA  1090

seq1  TTGTGGAATTC  1108
      |||||||||||
seq2  TTGTGGAATTC  1101

seq1: chr18_62744901_62746037
seq2: B6Ng01-024P13.g_70_1198

seq1  GAATTCCTTCTGAAAGATGATTACATAATATGACTTAAATTAATGCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTGAAAGATGATTACATAATATGACTTAAATTAATGCCAGT  50

seq1  TTACATTTGGCTGGCACATTAGCATTACTTAGTGTGTCCACATCTGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTGGCTGGCACATTAGCATTACTTAGTGTGTCCACATCTGTGTT  100

seq1  AGTTGACTAACATATAGGCTTGAGGTGGGGAGTGTCATTTTCTCGTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACTAACATATAGGCTTGAGGTGGGGAGTGTCATTTTCTCGTTTTA  150

seq1  TAGACAGAGACTGGTCTTTAGGGAGGTTAAGTCACCTAAGATCTCAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGAGACTGGTCTTTAGGGAGGTTAAGTCACCTAAGATCTCAGAGC  200

seq1  TACAGAATGATGGCAGGGCTTCAGACTCAGGTCCTTGTGTACAGTTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATGATGGCAGGGCTTCAGACTCAGGTCCTTGTGTACAGTTCTCA  250

seq1  CCTTCATGCAATAGTTTCCTCTTCACGTGGGTTTGGTGCAGTGATTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGCAATAGTTTCCTCTTCACGTGGGTTTGGTGCAGTGATTGCAA  300

seq1  TGGTTGCTATCACCAGCTATTTGGTTTTCTCATTTACATTCCTCTTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTATCACCAGCTATTTGGTTTTCTCATTTACATTCCTCTTCAAC  350

seq1  TGGAAGGCTTCTAGGACAGGTTTCAGCATTGTTCTAATATTGTAAGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCTTCTAGGACAGGTTTCAGCATTGTTCTAATATTGTAAGTGCA  400

seq1  TTCCTCAATCCTAGTTGCCATGGTTTGAACAGTGACACAGTCTCCAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAATCCTAGTTGCCATGGTTTGAACAGTGACACAGTCTCCAATAC  450

seq1  AAAATGTTCAGTTTACATACAGTGAGTACAAGGAGTGTAGCCAGTGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTCAGTTTACATACAGTGAGTACAAGGAGTGTAGCCAGTGAGAG  500

seq1  AGATAGCCAAGTACCTATGAATCTACCTGTTTTCTGTAGGAAAAACATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCCAAGTACCTATGAATCTACCTGTTTTCTGTAGGAAAAACATCT  550

seq1  GGCATCCTCAAAGCGCTGGGATTATGATCTGTGTGAATATGTTAATGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCTCAAAGCGCTGGGATTATGATCTGTGTGAATATGTTAATGATC  600

seq1  CACTGTGCAGACTGAGTGCTCCCGGACTCTTTGACAATGATTGCCATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCAGACTGAGTGCTCCCGGACTCTTTGACAATGATTGCCATGTT  650

seq1  TCCAAGCAGGACTGACTAAAAGTTCAAGTATGTGTGGATGGACCAGGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCAGGACTGACTAAAAGTTCAAGTATGTGTGGATGGACCAGGAAC  700

seq1  TAGAAATTTAGGCTGCAGAGGTTGTGTGGTGGTTGAGGACGAGGTCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTAGGCTGCAGAGGTTGTGTGGTGGTTGAGGACGAGGTCTGAT  750

seq1  CCCCA-GGACATATATAGTGGCTCTGAACCATCTTTAAATCAATCTTGAG  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGGACATATATAGTGGCTCTGAACCATCTTTAAATCAATCTTGAG  800

seq1  GGGATTCAGTGCTCTCCTGGCTGCGGGTCACTGCACGCACATGCTGGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCAGTGCTCTCCTGGCTGCGGGTCACTGCACGCACATGCTGGACA  850

seq1  GATATACAGGCAGGCAAAATA-TTTATACATACAATAAAAT-AAAAACAA  897
      |||||||||||| |||||||| ||||||||||||||||||| ||||||||
seq2  GATATACAGGCA-GCAAAATATTTTATACATACAATAAAATAAAAAACAA  899

seq1  ATAAAAGTTTCAAATTTGTTGAAGAGCTAGAGGCATTTATGTACAGTCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTTTCAAATTTGTTGAAGAGCTAGAGGCATTTATGTACAGTCTC  949

seq1  AAAGGTTATACTTAGTAATTATCCAA-GTGCATTGCTGCTTTTAAAAGGA  996
      |||| |  |||||||||||||||||| ||||| |||||||||  ||| ||
seq2  AAAGTTATTACTTAGTAATTATCCAAGGTGCA-TGCTGCTTT--AAAAGA  996

seq1  AGAAGAG-CATTTTGCACTTCTCTG-TCTGCCCAGGTGGAGAG-AAGAAA  1043
      ||||||| ||||||||||||||||| ||||||||||| || || ||||||
seq2  AGAAGAGCCATTTTGCACTTCTCTGTTCTGCCCAGGTTGAAAGAAAGAAA  1046

seq1  AAAAAGACCATAGATATGCAAATATTCTTGTGCTTTATGTATAAATATAA  1093
      ||||  | |||| ||| |||||  ||||   |||||| |  ||| |    
seq2  AAAATAAACATAAATA-GCAAAATTTCTGTGGCTTTA-GCTTAACT----  1090

seq1  TATAAATAAAATCATATTTATGATGTTAGTGTCAGCATGTAAAC  1137
      ||| ||  || ||| |||||||||||||  ||||||| ||||||
seq2  TATTAA-CAATTCA-ATTTATGATGTTA--GTCAGCA-GTAAAC  1129