BAC Information

Click to search

BAC

Clone NameB6Ng01-025A07
Chromosome18 (Build37)
Map Location 81,227,095 - 81,393,080
singlet/doubletdoublet
Overlap genenone
Upstream genePard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
Downstream geneLOC100039458, LOC100040871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025A07.bB6Ng01-025A07.g
ACCDH856484DH856485
length9281,166
definitionDH856484|Mus musculus domesticus DNA, BAC clone: B6Ng01-025A07, 5' end.DH856485|Mus musculus domesticus DNA, BAC clone: B6Ng01-025A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,227,095 - 81,228,026)(81,391,908 - 81,393,080)
sequence
gaattcactccatacatgcattctctattaactccacttaggcaaatttt
cgaaaactttacagtaaagattgtgattggtgaaagagttgaaattgagc
cagaatcattcattaaccagactcttttataaagcagaattatttattaa
ccaggatcattcattaattgccagcatctcaagcagtttttcactctcat
aattaagcaagttgacaccagaattcctttgctcattggctgacttcctg
gggaactcttccttgtggagagcagagatcactgtcattcagtagcactc
tagggacgcaagtctttagtccagcctcaggaacatttgtcccctcagtg
gtgaggttttcctgagcagcgtagcccaggctgtgtacagcacaggttta
gaaaaggaagacggagttctgtgttttggacactgtaactaaaggactcc
cagttcagacatcacttggaaggagggcacattgtagttcttgccgttga
tggatagtctgattttcaaggcaggtgtaggtgtgggtgcaggaacggag
catacctccctattttctttcatggttctctgctcaggtgaggggagtcc
tcctgcttcccggagtgagctcaggagtctggatgggtctccttgaggga
catctgagtggcttgaaagaggttttactctatggcagggtgattgagca
gtgcaagtggcttgggcattgtccatgcactttcatggcttcctaggaaa
gtagtaagcatattctgctgcagacatgccgggtctaggcgaggttcaga
caatcacctcttttggatgttgattattgcatgaagttgatgcttatcta
tccatctatgattcttgggacttaggagtggcttagcttttgaatacagt
ggagttgttttacatccttgaagcaaat
gaattctacatctagatccataggcagcaggaaaagagtgccaccggacc
tggcttgagcgtatgacacttaaatgcccacccccgatgacacatttcct
ccaacaaggccacattttttaaatcccttcaaatagtgtcaattactggt
gactaagcgttagaatctgtgagcctatgaggccattcttagtccagtga
ccacactttcataaaaagaatatctcaaattcaaattcctaaatgatcag
agaataacgatcatttataatgacgctgtgtcagctgcttctgctaaatg
gggctctccttgggtttcctttgacttaattcctatgctccaaacctgga
ctggtgacagctgtgtgcccacagaacctgaatgtcagagaggcacctgg
gctgcttagtggggcatcaaaacaaatgcccagatatcatgagtgagttt
ggaggaaaggtagatcctgggtggcatgtcacttggttcaggaagatacc
tacctggctcattctaagaagccatggtctgggtttgggtggattaaagg
ttagtaagacctttaacagggtgacactatcagcatttactcacatgatg
agcttttattaagccccgatgatgtagcatgtgctcgaccaggggctggg
aacatagatgtgcacacagaacaaaaagttcctgttgtcctagaattata
tatcagagagaaaaaggtatcatcagacacgcagccaatgaatgcaaggc
actagatgataataatatctcagagagccaagtgagggagaaaggcgtac
attggggtggggaataagggcaaatgattggggaaccaatgtttcagttt
gctaagtgtccctatgaagattcatctccactgccaacttgactggatgg
agccacacactagaaatacctctgagcatgtgtgtgaggatatctccaga
tggctaactgacaaaggaaatccacccagaacatgggcaatgtcatctca
tggcatcccaggctgaatagaataaggagagagaggtgagtactgacagc
atcctctttctgttttccactaacagacagaaattaccagccatggctcc
gcagccaatgaatttccttcccgtgggagactggtccttccaaacggata
gtcaacagaacacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_81227095_81228026
seq2: B6Ng01-025A07.b_44_971

seq1  GAATTCACTCCATACATGCATTCTCTATTAACTCCACTTAGGCAAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCATACATGCATTCTCTATTAACTCCACTTAGGCAAATTTT  50

seq1  CGAAAACTTTACAGTAAAGATTGTGATTGGTGAAAGAGTTGAAATTGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAACTTTACAGTAAAGATTGTGATTGGTGAAAGAGTTGAAATTGAGC  100

seq1  CAGAATCATTCATTAACCAGACTCTTTTATAAAGCAGAATTATTTATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCATTCATTAACCAGACTCTTTTATAAAGCAGAATTATTTATTAA  150

seq1  CCAGGATCATTCATTAATTGCCAGCATCTCAAGCAGTTTTTCACTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATCATTCATTAATTGCCAGCATCTCAAGCAGTTTTTCACTCTCAT  200

seq1  AATTAAGCAAGTTGACACCAGAATTCCTTTGCTCATTGGCTGACTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCAAGTTGACACCAGAATTCCTTTGCTCATTGGCTGACTTCCTG  250

seq1  GGGAACTCTTCCTTGTGGAGAGCAGAGATCACTGTCATTCAGTAGCACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTCTTCCTTGTGGAGAGCAGAGATCACTGTCATTCAGTAGCACTC  300

seq1  TAGGGACGCAAGTCTTTAGTCCAGCCTCAGGAACATTTGTCCCCTCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACGCAAGTCTTTAGTCCAGCCTCAGGAACATTTGTCCCCTCAGTG  350

seq1  GTGAGGTTTTCCTGAGCAGCGTAGCCCAGGCTGTGTACAGCACAGGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTTTCCTGAGCAGCGTAGCCCAGGCTGTGTACAGCACAGGTTTA  400

seq1  GAAAAGGAAGACGGAGTTCTGTGTTTTGGACACTGTAACTAAAGGACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAAGACGGAGTTCTGTGTTTTGGACACTGTAACTAAAGGACTCC  450

seq1  CAGTTCAGACATCACTTGGAAGGAGGGCACATTGTAGTTCTTGCCGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGACATCACTTGGAAGGAGGGCACATTGTAGTTCTTGCCGTTGA  500

seq1  TGGATAGTCTGATTTTCAAGGCAGGTGTAGGTGTGGGTGCAGGAACGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGTCTGATTTTCAAGGCAGGTGTAGGTGTGGGTGCAGGAACGGAG  550

seq1  CATACCTCCCTATTTTCTTTCATGGTTCTCTGCTCAGGTGAGGGGAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTCCCTATTTTCTTTCATGGTTCTCTGCTCAGGTGAGGGGAGTCC  600

seq1  TCCTGCTTCCCGGAGTGAGCTCAGGAGTCTGGATGGGTCTCCTTGAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTCCCGGAGTGAGCTCAGGAGTCTGGATGGGTCTCCTTGAGGGA  650

seq1  CATCTGAGTGGCTTGAAAGAGGTTTTACTCTATGGCAGGGTGATTGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAGTGGCTTGAAAGAGGTTTTACTCTATGGCAGGGTGATTGAGCA  700

seq1  GTGCAAGTGGCTTGGGCATTGTCCATGCACTTTCATGGCTTCCTAGG-AA  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGCAAGTGGCTTGGGCATTGTCCATGCACTTTCATGGCTTCCTAGGAAA  750

seq1  GTAGTAAGCATATTCTGCTGCAGACATGCCGGGTCTAGGCGAGGTTCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAAGCATATTCTGCTGCAGACATGCCGGGTCTAGGCGAGGTTCAGA  800

seq1  CAATCACCTCTTTTGGATGTTGATTATTGCATGAAGTTGATGCTTATCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACCTCTTTTGGATGTTGATTATTGCATGAAGTTGATGCTTATCTA  850

seq1  TCCATCTATGATTTCTTTGGGACTTAGGAGTGGCTTAGCATTTTGTAATA  899
      |||||||||||||   ||||||||||||||||||||||| ||||| ||| 
seq2  TCCATCTATGATT--CTTGGGACTTAGGAGTGGCTTAGC-TTTTG-AAT-  895

seq1  ACAGTGGAGTTGTGTAACAGCCTGGAAGCAAAT  932
      ||||||||||||| | ||| ||| |||||||||
seq2  ACAGTGGAGTTGTTTTACATCCTTGAAGCAAAT  928

seq1: chr18_81391908_81393080
seq2: B6Ng01-025A07.g_68_1233 (reverse)

seq1  AGTG-GTTCTGTTGACTTACAGTTTGGGAAGGGACCCAGTCTACCACGGG  49
      |||| ||||||||||||  | |||| ||||||   ||||||| |||||||
seq2  AGTGTGTTCTGTTGACTATCCGTTT-GGAAGG--ACCAGTCTCCCACGGG  47

seq1  AAGG-AAGTCA-TGGCTGCGGGAGCATGGCTGGTTATATTCTGTCTG-TA  96
      |||| || ||| |||||||||   |||||||||| || ||||||||| ||
seq2  AAGGAAATTCATTGGCTGCGGAGCCATGGCTGGTAAT-TTCTGTCTGTTA  96

seq1  GTGTGAAAACAGAAAGAGATGGCTGTCAGTACTCACCTCTCTTCCTCC-T  145
      ||| ||||||||||||||   |||||||||||||||||||||  |||| |
seq2  GTG-GAAAACAGAAAGAGGATGCTGTCAGTACTCACCTCTCT--CTCCTT  143

seq1  ATTCTATTCAGCCTGGGGATGCCATGAGATGACATTGCCCATGTTCTGGG  195
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTCTATTCAGCCT-GGGATGCCATGAGATGACATTGCCCATGTTCTGGG  192

seq1  TGGATTTTCCTTTGTCAGTTAAGCCATTCTGGAGATATCCTCACACACAT  245
      |||| ||||||||||||||| ||||| |||||||||||||||||||||||
seq2  TGGA-TTTCCTTTGTCAGTT-AGCCA-TCTGGAGATATCCTCACACACAT  239

seq1  GCTCAGAGGTATTTCCTAGTGTGTGGCTCCATCCAGTCAAGTTGGCAGTG  295
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGGTATTT-CTAGTGTGTGGCTCCATCCAGTCAAGTTGGCAGTG  288

seq1  GAGATGAATCTTCATAGGGACACTTAGCAAACTGAAACATTGGTTCCCCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAATCTTCATAGGGACACTTAGCAAACTGAAACATTGGTTCCCCA  338

seq1  ATCATTTGCCCTTATTCCCCACCCCAATGTACGCCTTTCTCCCTCACTTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGCCCTTATTCCCCACCCCAATGTACGCCTTTCTCCCTCACTTG  388

seq1  GCTCTCTGAGATATTATTATCATCTAGTGCCTTGCATTCATTGGCTGCGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGAGATATTATTATCATCTAGTGCCTTGCATTCATTGGCTGCGT  438

seq1  GTCTGATGATACCTTTTTCTCTCTGATATATAATTCTAGGACAACAGGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATGATACCTTTTTCTCTCTGATATATAATTCTAGGACAACAGGAA  488

seq1  CTTTTTGTTCTGTGTGCACATCTATGTTCCCAGCCCCTGGTCGAGCACAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTCTGTGTGCACATCTATGTTCCCAGCCCCTGGTCGAGCACAT  538

seq1  GCTACATCATCGGGGCTTAATAAAAGCTCATCATGTGAGTAAATGCTGAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATCATCGGGGCTTAATAAAAGCTCATCATGTGAGTAAATGCTGAT  588

seq1  AGTGTCACCCTGTTAAAGGTCTTACTAACCTTTAATCCACCCAAACCCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACCCTGTTAAAGGTCTTACTAACCTTTAATCCACCCAAACCCAG  638

seq1  ACCATGGCTTCTTAGAATGAGCCAGGTAGGTATCTTCCTGAACCAAGTGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCTTCTTAGAATGAGCCAGGTAGGTATCTTCCTGAACCAAGTGA  688

seq1  CATGCCACCCAGGATCTACCTTTCCTCCAAACTCACTCATGATATCTGGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACCCAGGATCTACCTTTCCTCCAAACTCACTCATGATATCTGGG  738

seq1  CATTTGTTTTGATGCCCCACTAAGCAGCCCAGGTGCCTCTCTGACATTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTTTGATGCCCCACTAAGCAGCCCAGGTGCCTCTCTGACATTCA  788

seq1  GGTTCTGTGGGCACACAGCTGTCACCAGTCCAGGTTTGGAGCATAGGAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTGGGCACACAGCTGTCACCAGTCCAGGTTTGGAGCATAGGAAT  838

seq1  TAAGTCAAAGGAAACCCAAGGAGAGCCCCATTTAGCAGAAGCAGCTGACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAAAGGAAACCCAAGGAGAGCCCCATTTAGCAGAAGCAGCTGACA  888

seq1  CAGCGTCATTATAAATGATCGTTATTCTCTGATCATTTAGGAATTTGAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTCATTATAAATGATCGTTATTCTCTGATCATTTAGGAATTTGAAT  938

seq1  TTGAGATATTCTTTTTATGAAAGTGTGGTCACTGGACTAAGAATGGCCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATATTCTTTTTATGAAAGTGTGGTCACTGGACTAAGAATGGCCTC  988

seq1  ATAGGCTCACAGATTCTAACGCTTAGTCACCAGTAATTGACACTATTTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTCACAGATTCTAACGCTTAGTCACCAGTAATTGACACTATTTGA  1038

seq1  AGGGATTTAAAAAATGTGGCCTTGTTGGAGGAAATGTGTCATCGGGGGTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTTAAAAAATGTGGCCTTGTTGGAGGAAATGTGTCATCGGGGGTG  1088

seq1  GGCATTTAAGTGTCATACGCTCAAGCCAGGTCCGGTGGCACTCTTTTCCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTAAGTGTCATACGCTCAAGCCAGGTCCGGTGGCACTCTTTTCCT  1138

seq1  GCTGCCTATGGATCTAGATGTAGAATTC  1173
      ||||||||||||||||||||||||||||
seq2  GCTGCCTATGGATCTAGATGTAGAATTC  1166