BAC Information

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BAC

Clone NameB6Ng01-026F09
Chromosome18 (Build37)
Map Location 35,201,290 - 35,311,752
singlet/doubletdoublet
Overlap geneLOC100041951, Ctnna1
Upstream geneEG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954
Downstream geneLrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026F09.bB6Ng01-026F09.g
ACCDH857409DH857410
length86973
definitionDH857409|Mus musculus domesticus DNA, BAC clone: B6Ng01-026F09, 5' end.DH857410|Mus musculus domesticus DNA, BAC clone: B6Ng01-026F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,201,290 - 35,201,375)(35,310,766 - 35,311,752)
sequence
gaattcaaggtcagctaggggtacacagtgaaagtgaaagcctgtcttaa
agacagacagacggatggggtgggggaggggagaaa
gaattcaaagccagcctggtctacacaatgagttctagcacagccagggc
tatatactgtaggaaggaaggaaagaaaggagggagggaaggagggaatc
tcagcccattaattaaatgtctcagcattaaaaacactggcctcccttct
gaatgacccaggatttattcccagaacccatatggcagctaaacaccacc
tgtaactccagctctagccaatatggtacatgtgcatatacatacatgca
ggcaaatcactcatatatatataataaaaaaccaatctttcaaaaaatat
aaagaaatcctaatcgaaactaaattttgagttaatagataaaggaaaca
cagaagtacagtaatcatgtctatgagaaaacagatatagctctaagcag
agcactgtggtccgtgcctgtaatcttagcactagagaaaggttgaggca
gggggagttcatgagttcaaggccagcctggactgaacagtatatttcct
agttagttacaaatgtctacatagcaagaccccatttttaaatttctttt
tctcattgggtatagtggtatctgtctgtatttccaaatccacagtaaat
tgaggcatgaaagtcatttgaacccagggaattcagattaatttgagcat
acggtagttcacacatataatcccagcatctgggaacctggggccaaaag
actgctataaatttatggtcaaccttagttacacttgagactatgtatca
aaaaagaaaaacaaaactgcaagggtagtataagagatggctgctcagca
gatactctggaacccaagtaagagtagaaaggagaaatacctgctccaaa
gtgtctctgacctctcaacctaatattgaacatacacgtagctatcttta
aacattaataagcttaaatttaaaagtttagatggggtaaacaagcaagg
gtggtttacatgctgtatcccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_35201290_35201375
seq2: B6Ng01-026F09.b_45_130

seq1  GAATTCAAGGTCAGCTAGGGGTACACAGTGAAAGTGAAAGCCTGTCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCAGCTAGGGGTACACAGTGAAAGTGAAAGCCTGTCTTAA  50

seq1  AGACAGACAGACGGATGGGGTGGGGGAGGGGAGAAA  86
      ||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAGACGGATGGGGTGGGGGAGGGGAGAAA  86

seq1: chr18_35310766_35311752
seq2: B6Ng01-026F09.g_68_1040 (reverse)

seq1  TTGGGATTACAGGCATGCTAAACCACACCTAGCTTTGTTTACCCCATCTA  50
      |||||| |||| ||||| |||||||| ||| || ||||||||||||||||
seq2  TTGGGA-TACA-GCATG-TAAACCAC-CCTTGC-TTGTTTACCCCATCTA  45

seq1  AAACTTTTTAAATTTAAGCTTATTTATTGTTTATATGATAGCTATGTGTA  100
      ||   ||||||||||||||||| ||| |||||| | |||||||| |||||
seq2  AA--CTTTTAAATTTAAGCTTA-TTAATGTTTA-AAGATAGCTACGTGTA  91

seq1  TGTTCCATGTTAGGTTTGTAGAGGTCAGAGGACAACTTTGGAGCAGGTA-  149
      ||||| || |||||||   |||||||||| ||| ||||||||||||||| 
seq2  TGTTCAATATTAGGTT--GAGAGGTCAGA-GAC-ACTTTGGAGCAGGTAT  137

seq1  TTCTCCTATCCTACTCTTACTTGGGTTCCAGGGTTATCTGCTGAGCAGCC  199
      ||||||| | ||||||||||||||||||||| | ||||||||||||||||
seq2  TTCTCCT-TTCTACTCTTACTTGGGTTCCAGAG-TATCTGCTGAGCAGCC  185

seq1  ATCTCTTATACTACCCTTGCACGTTTTGTTTTTCTTTTTTGATACATAGT  249
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATCTCTTATACTACCCTTGCA-GTTTTGTTTTTCTTTTTTGATACATAGT  234

seq1  CTCAAGTGTAACTAAGGTTGACCATAAATTTATAGCAGTCTTTTGGCCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGTAACTAAGGTTGACCATAAATTTATAGCAGTCTTTTGGCCCC  284

seq1  AGGTTCCCAGATGCTGGGATTATATGTGTGAACTACCGTATGCTCAAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCAGATGCTGGGATTATATGTGTGAACTACCGTATGCTCAAATT  334

seq1  AATCTGAATT-CCTGGGTTCAAATGACTTTCATGCCTCAATTTACTGTGG  398
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAATTCCCTGGGTTCAAATGACTTTCATGCCTCAATTTACTGTGG  384

seq1  ATTTGGAAATACAGACAGATACCACTATACCCAATGAGAAAAAGAAATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAATACAGACAGATACCACTATACCCAATGAGAAAAAGAAATTT  434

seq1  AAAAATGGGGTCTTGCTATGTAGACATTTGTAACTAACTAGGAAATATAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGGGTCTTGCTATGTAGACATTTGTAACTAACTAGGAAATATAC  484

seq1  TGTTCAGTCCAGGCTGGCCTTGAACTCATGAACTCCCCCTGCCTCAACCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTCCAGGCTGGCCTTGAACTCATGAACTCCCCCTGCCTCAACCT  534

seq1  TTCTCTAGTGCTAAGATTACAGGCACGGACCACAGTGCTCTGCTTAGAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGTGCTAAGATTACAGGCACGGACCACAGTGCTCTGCTTAGAGC  584

seq1  TATATCTGTTTTCTCATAGACATGATTACTGTACTTCTGTGTTTCCTTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGTTTTCTCATAGACATGATTACTGTACTTCTGTGTTTCCTTTA  634

seq1  TCTATTAACTCAAAATTTAGTTTCGATTAGGATTTCTTTATATTTTTTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAACTCAAAATTTAGTTTCGATTAGGATTTCTTTATATTTTTTGA  684

seq1  AAGATTGGTTTTTTATTATATATATATGAGTGATTTGCCTGCATGTATGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGGTTTTTTATTATATATATATGAGTGATTTGCCTGCATGTATGT  734

seq1  ATATGCACATGTACCATATTGGCTAGAGCTGGAGTTACAGGTGGTGTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACATGTACCATATTGGCTAGAGCTGGAGTTACAGGTGGTGTTTA  784

seq1  GCTGCCATATGGGTTCTGGGAATAAATCCTGGGTCATTCAGAAGGGAGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATATGGGTTCTGGGAATAAATCCTGGGTCATTCAGAAGGGAGGC  834

seq1  CAGTGTTTTTAATGCTGAGACATTTAATTAATGGGCTGAGATTCCCTCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTTTAATGCTGAGACATTTAATTAATGGGCTGAGATTCCCTCCT  884

seq1  TCCCTCCCTCCTTTCTTTCCTTCCTTCCTACAGTATATAGCCCTGGCTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCTTTCTTTCCTTCCTTCCTACAGTATATAGCCCTGGCTGT  934

seq1  GCTAGAACTCATTGTGTAGACCAGGCTGGCTTTGAATTC  987
      |||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAACTCATTGTGTAGACCAGGCTGGCTTTGAATTC  973